Experiment: R2A_PIPES pH 4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_04430 and hflC are separated by 167 nucleotides hflC and yabN are separated by 66 nucleotides
OKGIIK_04430: OKGIIK_04430 - Serine protease, at 960,795 to 962,186
_04430
OKGIIK_04435: hflC - SPFH domain / Band 7 family, at 962,354 to 963,130
hflC
OKGIIK_04440: yabN - Uncharacterized conserved protein YabN, contains tetrapyrrole methylase and MazG-like pyrophosphatase domain, at 963,197 to 964,018
yabN
Position (kb) 962
963
964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 961.513 kb on + strand, within OKGIIK_04430 at 961.513 kb on + strand, within OKGIIK_04430 at 961.513 kb on + strand, within OKGIIK_04430 at 961.513 kb on + strand, within OKGIIK_04430 at 961.513 kb on + strand, within OKGIIK_04430 at 961.563 kb on + strand, within OKGIIK_04430 at 961.563 kb on + strand, within OKGIIK_04430 at 961.563 kb on + strand, within OKGIIK_04430 at 961.563 kb on + strand, within OKGIIK_04430 at 961.563 kb on + strand, within OKGIIK_04430 at 961.563 kb on + strand, within OKGIIK_04430 at 961.563 kb on + strand, within OKGIIK_04430 at 961.564 kb on - strand, within OKGIIK_04430 at 961.564 kb on - strand, within OKGIIK_04430 at 961.564 kb on - strand, within OKGIIK_04430 at 961.564 kb on - strand, within OKGIIK_04430 at 961.620 kb on + strand, within OKGIIK_04430 at 961.620 kb on + strand, within OKGIIK_04430 at 961.620 kb on + strand, within OKGIIK_04430 at 961.620 kb on + strand, within OKGIIK_04430 at 961.620 kb on + strand, within OKGIIK_04430 at 961.620 kb on + strand, within OKGIIK_04430 at 961.620 kb on + strand, within OKGIIK_04430 at 961.621 kb on - strand, within OKGIIK_04430 at 961.621 kb on - strand, within OKGIIK_04430 at 961.621 kb on - strand, within OKGIIK_04430 at 961.621 kb on - strand, within OKGIIK_04430 at 961.725 kb on + strand, within OKGIIK_04430 at 961.726 kb on - strand, within OKGIIK_04430 at 961.726 kb on - strand, within OKGIIK_04430 at 961.726 kb on - strand, within OKGIIK_04430 at 961.752 kb on + strand, within OKGIIK_04430 at 961.752 kb on + strand, within OKGIIK_04430 at 961.752 kb on + strand, within OKGIIK_04430 at 961.752 kb on + strand, within OKGIIK_04430 at 961.752 kb on + strand, within OKGIIK_04430 at 961.752 kb on + strand, within OKGIIK_04430 at 961.752 kb on + strand, within OKGIIK_04430 at 961.752 kb on + strand, within OKGIIK_04430 at 961.753 kb on - strand, within OKGIIK_04430 at 961.753 kb on - strand, within OKGIIK_04430 at 961.753 kb on - strand, within OKGIIK_04430 at 961.753 kb on - strand, within OKGIIK_04430 at 961.753 kb on - strand, within OKGIIK_04430 at 961.880 kb on + strand, within OKGIIK_04430 at 961.881 kb on - strand, within OKGIIK_04430 at 961.881 kb on - strand, within OKGIIK_04430 at 961.881 kb on - strand, within OKGIIK_04430 at 961.881 kb on - strand, within OKGIIK_04430 at 961.897 kb on - strand, within OKGIIK_04430 at 961.897 kb on - strand, within OKGIIK_04430 at 961.897 kb on - strand, within OKGIIK_04430 at 961.933 kb on + strand, within OKGIIK_04430 at 961.933 kb on + strand, within OKGIIK_04430 at 961.933 kb on + strand, within OKGIIK_04430 at 961.934 kb on - strand, within OKGIIK_04430 at 961.934 kb on - strand, within OKGIIK_04430 at 961.934 kb on - strand, within OKGIIK_04430 at 961.934 kb on - strand, within OKGIIK_04430 at 961.934 kb on - strand, within OKGIIK_04430 at 961.934 kb on - strand, within OKGIIK_04430 at 961.934 kb on - strand, within OKGIIK_04430 at 961.934 kb on - strand, within OKGIIK_04430 at 961.934 kb on - strand, within OKGIIK_04430 at 962.077 kb on + strand at 962.077 kb on + strand at 962.077 kb on + strand at 962.077 kb on + strand at 962.077 kb on + strand at 962.077 kb on + strand at 962.078 kb on - strand at 962.078 kb on - strand at 962.078 kb on - strand at 962.078 kb on - strand at 962.078 kb on - strand at 962.373 kb on + strand at 962.373 kb on + strand at 962.373 kb on + strand at 962.373 kb on + strand at 962.373 kb on + strand at 962.373 kb on + strand at 962.373 kb on + strand at 962.373 kb on + strand at 962.374 kb on - strand at 962.374 kb on - strand at 962.374 kb on - strand at 962.374 kb on - strand at 962.429 kb on + strand at 962.429 kb on + strand at 962.430 kb on - strand at 962.430 kb on - strand at 962.430 kb on - strand at 962.462 kb on + strand, within hflC at 962.463 kb on - strand, within hflC at 962.612 kb on + strand, within hflC at 962.612 kb on + strand, within hflC at 962.612 kb on + strand, within hflC at 962.613 kb on - strand, within hflC at 962.613 kb on - strand, within hflC at 962.613 kb on - strand, within hflC at 962.613 kb on - strand, within hflC at 962.613 kb on - strand, within hflC at 962.994 kb on + strand, within hflC at 962.994 kb on + strand, within hflC at 962.994 kb on + strand, within hflC at 962.994 kb on + strand, within hflC at 962.994 kb on + strand, within hflC at 962.994 kb on + strand, within hflC at 962.994 kb on + strand, within hflC at 962.994 kb on + strand, within hflC at 962.995 kb on - strand, within hflC at 962.995 kb on - strand, within hflC at 962.995 kb on - strand, within hflC at 962.995 kb on - strand, within hflC at 962.995 kb on - strand, within hflC at 962.995 kb on - strand, within hflC at 962.995 kb on - strand, within hflC at 962.995 kb on - strand, within hflC at 962.995 kb on - strand, within hflC at 962.995 kb on - strand, within hflC at 962.995 kb on - strand, within hflC at 962.995 kb on - strand, within hflC at 962.995 kb on - strand, within hflC at 962.999 kb on + strand, within hflC at 962.999 kb on + strand, within hflC at 962.999 kb on + strand, within hflC at 963.000 kb on - strand, within hflC at 963.000 kb on - strand, within hflC at 963.000 kb on - strand, within hflC at 963.159 kb on + strand at 963.159 kb on + strand at 963.159 kb on + strand at 963.159 kb on + strand at 963.159 kb on + strand at 963.159 kb on + strand at 963.159 kb on + strand at 963.160 kb on - strand at 963.160 kb on - strand at 963.160 kb on - strand at 963.160 kb on - strand at 963.160 kb on - strand at 963.160 kb on - strand at 963.383 kb on + strand, within yabN at 963.383 kb on + strand, within yabN at 963.383 kb on + strand, within yabN at 963.383 kb on + strand, within yabN at 963.383 kb on + strand, within yabN at 963.383 kb on + strand, within yabN at 963.383 kb on + strand, within yabN at 963.384 kb on - strand, within yabN at 963.384 kb on - strand, within yabN at 963.384 kb on - strand, within yabN at 963.384 kb on - strand, within yabN at 963.384 kb on - strand, within yabN at 963.384 kb on - strand, within yabN at 963.386 kb on + strand, within yabN at 963.386 kb on + strand, within yabN at 963.387 kb on - strand, within yabN at 963.387 kb on - strand, within yabN at 963.387 kb on - strand, within yabN at 963.387 kb on - strand, within yabN at 963.387 kb on - strand, within yabN at 963.416 kb on + strand, within yabN at 963.416 kb on + strand, within yabN at 963.417 kb on - strand, within yabN at 963.417 kb on - strand, within yabN at 963.417 kb on - strand, within yabN at 963.482 kb on + strand, within yabN at 963.482 kb on + strand, within yabN at 963.482 kb on + strand, within yabN at 963.482 kb on + strand, within yabN at 963.482 kb on + strand, within yabN at 963.482 kb on + strand, within yabN at 963.483 kb on - strand, within yabN at 963.483 kb on - strand, within yabN at 963.483 kb on - strand, within yabN at 963.483 kb on - strand, within yabN at 963.483 kb on - strand, within yabN at 963.483 kb on - strand, within yabN at 963.483 kb on - strand, within yabN at 963.483 kb on - strand, within yabN at 963.483 kb on - strand, within yabN at 963.483 kb on - strand, within yabN at 963.483 kb on - strand, within yabN at 963.483 kb on - strand, within yabN at 963.483 kb on - strand, within yabN at 963.483 kb on - strand, within yabN at 963.483 kb on - strand, within yabN at 963.549 kb on - strand, within yabN at 963.593 kb on + strand, within yabN at 963.593 kb on + strand, within yabN at 963.593 kb on + strand, within yabN at 963.593 kb on + strand, within yabN at 963.594 kb on - strand, within yabN at 963.623 kb on + strand, within yabN at 963.662 kb on + strand, within yabN at 963.662 kb on + strand, within yabN at 963.663 kb on - strand, within yabN at 963.663 kb on - strand, within yabN at 963.663 kb on - strand, within yabN at 963.689 kb on + strand, within yabN at 963.690 kb on - strand, within yabN at 963.690 kb on - strand, within yabN at 963.690 kb on - strand, within yabN at 963.780 kb on + strand, within yabN at 963.780 kb on + strand, within yabN at 963.780 kb on + strand, within yabN at 963.781 kb on - strand, within yabN at 963.781 kb on - strand, within yabN at 963.781 kb on - strand, within yabN at 963.795 kb on - strand, within yabN at 963.795 kb on - strand, within yabN at 963.821 kb on + strand, within yabN at 963.821 kb on + strand, within yabN at 963.821 kb on + strand, within yabN at 963.821 kb on + strand, within yabN at 963.821 kb on + strand, within yabN at 963.822 kb on - strand, within yabN at 963.822 kb on - strand, within yabN at 963.822 kb on - strand, within yabN at 963.822 kb on - strand, within yabN at 964.024 kb on + strand at 964.044 kb on + strand at 964.044 kb on + strand at 964.044 kb on + strand at 964.044 kb on + strand at 964.044 kb on + strand at 964.045 kb on - strand at 964.045 kb on - strand at 964.045 kb on - strand at 964.051 kb on + strand at 964.051 kb on + strand at 964.051 kb on + strand at 964.051 kb on + strand at 964.051 kb on + strand at 964.095 kb on + strand at 964.095 kb on + strand at 964.095 kb on + strand at 964.095 kb on + strand at 964.095 kb on + strand at 964.095 kb on + strand at 964.095 kb on + strand at 964.095 kb on + strand at 964.095 kb on + strand at 964.096 kb on - strand at 964.096 kb on - strand at 964.096 kb on - strand at 964.096 kb on - strand at 964.096 kb on - strand at 964.096 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.5 remove 961,513 + OKGIIK_04430 0.52 -0.5 961,513 + OKGIIK_04430 0.52 +0.7 961,513 + OKGIIK_04430 0.52 +1.3 961,513 + OKGIIK_04430 0.52 +0.6 961,513 + OKGIIK_04430 0.52 +0.0 961,563 + OKGIIK_04430 0.55 +0.1 961,563 + OKGIIK_04430 0.55 -1.2 961,563 + OKGIIK_04430 0.55 +0.7 961,563 + OKGIIK_04430 0.55 -0.9 961,563 + OKGIIK_04430 0.55 -0.4 961,563 + OKGIIK_04430 0.55 -1.2 961,563 + OKGIIK_04430 0.55 +1.2 961,564 - OKGIIK_04430 0.55 -1.9 961,564 - OKGIIK_04430 0.55 +0.1 961,564 - OKGIIK_04430 0.55 -0.1 961,564 - OKGIIK_04430 0.55 +0.4 961,620 + OKGIIK_04430 0.59 +2.1 961,620 + OKGIIK_04430 0.59 -1.2 961,620 + OKGIIK_04430 0.59 -0.3 961,620 + OKGIIK_04430 0.59 -0.2 961,620 + OKGIIK_04430 0.59 -1.4 961,620 + OKGIIK_04430 0.59 -1.4 961,620 + OKGIIK_04430 0.59 -2.4 961,621 - OKGIIK_04430 0.59 -0.9 961,621 - OKGIIK_04430 0.59 -0.4 961,621 - OKGIIK_04430 0.59 +0.6 961,621 - OKGIIK_04430 0.59 -0.7 961,725 + OKGIIK_04430 0.67 +0.8 961,726 - OKGIIK_04430 0.67 -0.7 961,726 - OKGIIK_04430 0.67 -0.3 961,726 - OKGIIK_04430 0.67 +0.9 961,752 + OKGIIK_04430 0.69 -0.2 961,752 + OKGIIK_04430 0.69 -1.2 961,752 + OKGIIK_04430 0.69 -1.1 961,752 + OKGIIK_04430 0.69 -2.4 961,752 + OKGIIK_04430 0.69 -0.6 961,752 + OKGIIK_04430 0.69 -0.5 961,752 + OKGIIK_04430 0.69 -0.6 961,752 + OKGIIK_04430 0.69 -0.3 961,753 - OKGIIK_04430 0.69 -2.0 961,753 - OKGIIK_04430 0.69 +0.3 961,753 - OKGIIK_04430 0.69 +1.2 961,753 - OKGIIK_04430 0.69 +1.6 961,753 - OKGIIK_04430 0.69 -1.4 961,880 + OKGIIK_04430 0.78 -0.2 961,881 - OKGIIK_04430 0.78 -0.4 961,881 - OKGIIK_04430 0.78 +0.6 961,881 - OKGIIK_04430 0.78 +0.4 961,881 - OKGIIK_04430 0.78 +0.2 961,897 - OKGIIK_04430 0.79 -0.3 961,897 - OKGIIK_04430 0.79 -0.6 961,897 - OKGIIK_04430 0.79 -0.4 961,933 + OKGIIK_04430 0.82 +0.1 961,933 + OKGIIK_04430 0.82 -0.4 961,933 + OKGIIK_04430 0.82 -1.9 961,934 - OKGIIK_04430 0.82 -0.8 961,934 - OKGIIK_04430 0.82 +0.4 961,934 - OKGIIK_04430 0.82 -1.0 961,934 - OKGIIK_04430 0.82 +1.1 961,934 - OKGIIK_04430 0.82 -2.0 961,934 - OKGIIK_04430 0.82 +0.8 961,934 - OKGIIK_04430 0.82 +1.3 961,934 - OKGIIK_04430 0.82 +0.8 961,934 - OKGIIK_04430 0.82 -0.7 962,077 + -0.2 962,077 + -2.9 962,077 + +0.2 962,077 + +0.3 962,077 + +0.6 962,077 + +0.3 962,078 - +0.4 962,078 - +0.1 962,078 - +1.4 962,078 - -0.1 962,078 - -1.1 962,373 + +0.9 962,373 + +0.5 962,373 + +1.4 962,373 + +0.7 962,373 + +0.3 962,373 + -0.3 962,373 + +0.8 962,373 + -0.2 962,374 - +0.2 962,374 - -1.7 962,374 - -0.4 962,374 - +1.8 962,429 + +0.7 962,429 + -0.5 962,430 - -0.5 962,430 - +0.6 962,430 - -1.6 962,462 + hflC OKGIIK_04435 0.14 -0.1 962,463 - hflC OKGIIK_04435 0.14 -0.9 962,612 + hflC OKGIIK_04435 0.33 +0.0 962,612 + hflC OKGIIK_04435 0.33 +0.1 962,612 + hflC OKGIIK_04435 0.33 +0.9 962,613 - hflC OKGIIK_04435 0.33 -0.6 962,613 - hflC OKGIIK_04435 0.33 -0.3 962,613 - hflC OKGIIK_04435 0.33 +0.4 962,613 - hflC OKGIIK_04435 0.33 -0.7 962,613 - hflC OKGIIK_04435 0.33 -1.2 962,994 + hflC OKGIIK_04435 0.82 -1.2 962,994 + hflC OKGIIK_04435 0.82 +0.1 962,994 + hflC OKGIIK_04435 0.82 -0.2 962,994 + hflC OKGIIK_04435 0.82 +0.4 962,994 + hflC OKGIIK_04435 0.82 -1.2 962,994 + hflC OKGIIK_04435 0.82 -0.6 962,994 + hflC OKGIIK_04435 0.82 -0.9 962,994 + hflC OKGIIK_04435 0.82 -0.1 962,995 - hflC OKGIIK_04435 0.82 -1.0 962,995 - hflC OKGIIK_04435 0.82 -0.8 962,995 - hflC OKGIIK_04435 0.82 -1.9 962,995 - hflC OKGIIK_04435 0.82 +0.5 962,995 - hflC OKGIIK_04435 0.82 -0.2 962,995 - hflC OKGIIK_04435 0.82 -1.0 962,995 - hflC OKGIIK_04435 0.82 -0.9 962,995 - hflC OKGIIK_04435 0.82 +1.0 962,995 - hflC OKGIIK_04435 0.82 -0.8 962,995 - hflC OKGIIK_04435 0.82 -0.6 962,995 - hflC OKGIIK_04435 0.82 -0.6 962,995 - hflC OKGIIK_04435 0.82 +1.1 962,995 - hflC OKGIIK_04435 0.82 +2.2 962,999 + hflC OKGIIK_04435 0.83 -1.9 962,999 + hflC OKGIIK_04435 0.83 -0.4 962,999 + hflC OKGIIK_04435 0.83 -0.6 963,000 - hflC OKGIIK_04435 0.83 -1.2 963,000 - hflC OKGIIK_04435 0.83 +0.4 963,000 - hflC OKGIIK_04435 0.83 -0.2 963,159 + +1.3 963,159 + -1.2 963,159 + -0.9 963,159 + -0.7 963,159 + +0.5 963,159 + +0.5 963,159 + +0.8 963,160 - -1.8 963,160 - +0.9 963,160 - -1.3 963,160 - -0.2 963,160 - -0.4 963,160 - -0.9 963,383 + yabN OKGIIK_04440 0.23 -0.9 963,383 + yabN OKGIIK_04440 0.23 -0.9 963,383 + yabN OKGIIK_04440 0.23 -0.3 963,383 + yabN OKGIIK_04440 0.23 +0.1 963,383 + yabN OKGIIK_04440 0.23 -2.1 963,383 + yabN OKGIIK_04440 0.23 +0.1 963,383 + yabN OKGIIK_04440 0.23 -0.3 963,384 - yabN OKGIIK_04440 0.23 +0.7 963,384 - yabN OKGIIK_04440 0.23 +0.1 963,384 - yabN OKGIIK_04440 0.23 -0.6 963,384 - yabN OKGIIK_04440 0.23 -0.1 963,384 - yabN OKGIIK_04440 0.23 -0.2 963,384 - yabN OKGIIK_04440 0.23 -2.4 963,386 + yabN OKGIIK_04440 0.23 +0.5 963,386 + yabN OKGIIK_04440 0.23 -0.4 963,387 - yabN OKGIIK_04440 0.23 +0.4 963,387 - yabN OKGIIK_04440 0.23 +0.2 963,387 - yabN OKGIIK_04440 0.23 +0.7 963,387 - yabN OKGIIK_04440 0.23 -1.9 963,387 - yabN OKGIIK_04440 0.23 +0.7 963,416 + yabN OKGIIK_04440 0.27 +0.9 963,416 + yabN OKGIIK_04440 0.27 -0.6 963,417 - yabN OKGIIK_04440 0.27 +1.8 963,417 - yabN OKGIIK_04440 0.27 -0.6 963,417 - yabN OKGIIK_04440 0.27 -0.6 963,482 + yabN OKGIIK_04440 0.35 +1.2 963,482 + yabN OKGIIK_04440 0.35 -0.4 963,482 + yabN OKGIIK_04440 0.35 +0.0 963,482 + yabN OKGIIK_04440 0.35 -0.2 963,482 + yabN OKGIIK_04440 0.35 -0.7 963,482 + yabN OKGIIK_04440 0.35 -0.1 963,483 - yabN OKGIIK_04440 0.35 -0.4 963,483 - yabN OKGIIK_04440 0.35 -0.9 963,483 - yabN OKGIIK_04440 0.35 +1.0 963,483 - yabN OKGIIK_04440 0.35 -1.4 963,483 - yabN OKGIIK_04440 0.35 -0.4 963,483 - yabN OKGIIK_04440 0.35 +0.1 963,483 - yabN OKGIIK_04440 0.35 +1.7 963,483 - yabN OKGIIK_04440 0.35 -0.5 963,483 - yabN OKGIIK_04440 0.35 -1.1 963,483 - yabN OKGIIK_04440 0.35 -0.1 963,483 - yabN OKGIIK_04440 0.35 -2.1 963,483 - yabN OKGIIK_04440 0.35 -0.6 963,483 - yabN OKGIIK_04440 0.35 -0.6 963,483 - yabN OKGIIK_04440 0.35 -0.6 963,483 - yabN OKGIIK_04440 0.35 +0.9 963,549 - yabN OKGIIK_04440 0.43 +0.3 963,593 + yabN OKGIIK_04440 0.48 +1.0 963,593 + yabN OKGIIK_04440 0.48 +1.4 963,593 + yabN OKGIIK_04440 0.48 -0.1 963,593 + yabN OKGIIK_04440 0.48 -0.2 963,594 - yabN OKGIIK_04440 0.48 -0.4 963,623 + yabN OKGIIK_04440 0.52 +1.9 963,662 + yabN OKGIIK_04440 0.57 -0.6 963,662 + yabN OKGIIK_04440 0.57 +0.4 963,663 - yabN OKGIIK_04440 0.57 -0.9 963,663 - yabN OKGIIK_04440 0.57 +0.9 963,663 - yabN OKGIIK_04440 0.57 +1.8 963,689 + yabN OKGIIK_04440 0.60 -1.7 963,690 - yabN OKGIIK_04440 0.60 +0.9 963,690 - yabN OKGIIK_04440 0.60 +1.4 963,690 - yabN OKGIIK_04440 0.60 -0.1 963,780 + yabN OKGIIK_04440 0.71 -0.0 963,780 + yabN OKGIIK_04440 0.71 +0.6 963,780 + yabN OKGIIK_04440 0.71 -0.7 963,781 - yabN OKGIIK_04440 0.71 +1.2 963,781 - yabN OKGIIK_04440 0.71 -1.3 963,781 - yabN OKGIIK_04440 0.71 +0.6 963,795 - yabN OKGIIK_04440 0.73 +0.2 963,795 - yabN OKGIIK_04440 0.73 +0.7 963,821 + yabN OKGIIK_04440 0.76 +0.0 963,821 + yabN OKGIIK_04440 0.76 +0.4 963,821 + yabN OKGIIK_04440 0.76 -0.3 963,821 + yabN OKGIIK_04440 0.76 -1.4 963,821 + yabN OKGIIK_04440 0.76 +1.8 963,822 - yabN OKGIIK_04440 0.76 +0.7 963,822 - yabN OKGIIK_04440 0.76 -0.4 963,822 - yabN OKGIIK_04440 0.76 -1.1 963,822 - yabN OKGIIK_04440 0.76 -0.4 964,024 + +0.2 964,044 + +0.2 964,044 + +0.1 964,044 + +0.2 964,044 + +0.4 964,044 + +1.3 964,045 - -0.9 964,045 - +0.1 964,045 - -0.6 964,051 + +0.4 964,051 + -0.4 964,051 + +0.1 964,051 + +0.6 964,051 + -1.2 964,095 + -0.2 964,095 + -0.9 964,095 + +1.0 964,095 + -0.7 964,095 + -0.9 964,095 + +0.2 964,095 + -0.7 964,095 + -0.3 964,095 + +0.1 964,096 - -1.2 964,096 - +1.8 964,096 - -1.0 964,096 - +0.4 964,096 - +0.4 964,096 - +1.1
Or see this region's nucleotide sequence