Experiment: R2A_PIPES pH 4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sbm and OKGIIK_04080 are separated by 261 nucleotides OKGIIK_04080 and OKGIIK_04085 are separated by 55 nucleotides OKGIIK_04085 and OKGIIK_04090 are separated by 141 nucleotides OKGIIK_04090 and OKGIIK_04095 are separated by 9 nucleotides
OKGIIK_04075: sbm - methylmalonyl-CoA mutase, at 892,008 to 895,568
sbm
OKGIIK_04080: OKGIIK_04080 - DUF2442 domain-containing protein, at 895,830 to 896,099
_04080
OKGIIK_04085: OKGIIK_04085 - hypothetical protein, at 896,155 to 896,352
_04085
OKGIIK_04090: OKGIIK_04090 - hypothetical protein, at 896,494 to 897,225
_04090
OKGIIK_04095: OKGIIK_04095 - hypothetical protein, at 897,235 to 899,517
_04095
Position (kb) 896
897 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.210 kb on - strand, within sbm at 895.210 kb on - strand, within sbm at 895.210 kb on - strand, within sbm at 895.210 kb on - strand, within sbm at 895.210 kb on - strand, within sbm at 895.210 kb on - strand, within sbm at 895.210 kb on - strand, within sbm at 895.210 kb on - strand, within sbm at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.243 kb on - strand at 895.243 kb on - strand at 895.243 kb on - strand at 895.243 kb on - strand at 895.245 kb on + strand at 895.245 kb on + strand at 895.245 kb on + strand at 895.246 kb on - strand at 895.246 kb on - strand at 895.246 kb on - strand at 895.246 kb on - strand at 895.292 kb on + strand at 895.292 kb on + strand at 895.292 kb on + strand at 895.292 kb on + strand at 895.292 kb on + strand at 895.293 kb on - strand at 895.293 kb on - strand at 895.293 kb on - strand at 895.293 kb on - strand at 895.293 kb on - strand at 895.293 kb on - strand at 895.427 kb on + strand at 895.427 kb on + strand at 895.427 kb on + strand at 895.427 kb on + strand at 895.428 kb on - strand at 895.428 kb on - strand at 895.428 kb on - strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.534 kb on - strand at 895.534 kb on - strand at 895.552 kb on - strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.598 kb on + strand at 895.598 kb on + strand at 895.598 kb on + strand at 895.599 kb on - strand at 895.599 kb on - strand at 895.599 kb on - strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.614 kb on + strand at 895.614 kb on + strand at 895.614 kb on + strand at 895.614 kb on + strand at 895.614 kb on + strand at 895.615 kb on - strand at 895.615 kb on - strand at 895.615 kb on - strand at 895.642 kb on + strand at 895.642 kb on + strand at 895.642 kb on + strand at 895.642 kb on + strand at 895.642 kb on + strand at 895.642 kb on + strand at 895.642 kb on + strand at 895.642 kb on + strand at 895.643 kb on - strand at 895.643 kb on - strand at 895.643 kb on - strand at 895.643 kb on - strand at 895.643 kb on - strand at 895.643 kb on - strand at 895.643 kb on - strand at 895.653 kb on + strand at 895.653 kb on + strand at 895.653 kb on + strand at 895.654 kb on - strand at 895.654 kb on - strand at 895.654 kb on - strand at 895.654 kb on - strand at 895.654 kb on - strand at 895.654 kb on - strand at 895.654 kb on - strand at 895.835 kb on + strand at 895.835 kb on + strand at 895.835 kb on + strand at 895.835 kb on + strand at 895.835 kb on + strand at 895.836 kb on - strand at 895.836 kb on - strand at 895.836 kb on - strand at 895.836 kb on - strand at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.047 kb on - strand, within OKGIIK_04080 at 896.047 kb on - strand, within OKGIIK_04080 at 896.047 kb on - strand, within OKGIIK_04080 at 896.047 kb on - strand, within OKGIIK_04080 at 896.047 kb on - strand, within OKGIIK_04080 at 896.101 kb on + strand at 896.101 kb on + strand at 896.101 kb on + strand at 896.101 kb on + strand at 896.101 kb on + strand at 896.102 kb on - strand at 896.102 kb on - strand at 896.102 kb on - strand at 896.121 kb on + strand at 896.121 kb on + strand at 896.121 kb on + strand at 896.122 kb on - strand at 896.122 kb on - strand at 896.122 kb on - strand at 896.122 kb on - strand at 896.161 kb on + strand at 896.161 kb on + strand at 896.161 kb on + strand at 896.162 kb on - strand at 896.197 kb on - strand, within OKGIIK_04085 at 896.197 kb on - strand, within OKGIIK_04085 at 896.306 kb on + strand, within OKGIIK_04085 at 896.341 kb on + strand at 896.341 kb on + strand at 896.341 kb on + strand at 896.341 kb on + strand at 896.341 kb on + strand at 896.341 kb on + strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.343 kb on + strand at 896.343 kb on + strand at 896.343 kb on + strand at 896.343 kb on + strand at 896.343 kb on + strand at 896.343 kb on + strand at 896.344 kb on - strand at 896.344 kb on - strand at 896.344 kb on - strand at 896.344 kb on - strand at 896.344 kb on - strand at 896.344 kb on - strand at 896.344 kb on - strand at 896.396 kb on - strand at 896.443 kb on + strand at 896.452 kb on - strand at 896.461 kb on + strand at 896.463 kb on + strand at 896.465 kb on + strand at 896.465 kb on + strand at 896.465 kb on + strand at 896.466 kb on - strand at 896.469 kb on + strand at 896.502 kb on + strand at 896.502 kb on + strand at 896.503 kb on - strand at 896.558 kb on + strand at 896.612 kb on - strand, within OKGIIK_04090 at 896.622 kb on - strand, within OKGIIK_04090 at 896.633 kb on + strand, within OKGIIK_04090 at 896.634 kb on - strand, within OKGIIK_04090 at 896.634 kb on - strand, within OKGIIK_04090 at 896.634 kb on - strand, within OKGIIK_04090 at 896.635 kb on + strand, within OKGIIK_04090 at 896.635 kb on + strand, within OKGIIK_04090 at 896.636 kb on - strand, within OKGIIK_04090 at 896.684 kb on + strand, within OKGIIK_04090 at 896.685 kb on - strand, within OKGIIK_04090 at 896.695 kb on - strand, within OKGIIK_04090 at 896.895 kb on + strand, within OKGIIK_04090 at 896.896 kb on - strand, within OKGIIK_04090 at 896.896 kb on - strand, within OKGIIK_04090 at 896.916 kb on + strand, within OKGIIK_04090 at 896.961 kb on - strand, within OKGIIK_04090 at 897.026 kb on - strand, within OKGIIK_04090 at 897.027 kb on + strand, within OKGIIK_04090 at 897.028 kb on - strand, within OKGIIK_04090 at 897.028 kb on - strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.206 kb on - strand at 897.206 kb on - strand at 897.223 kb on + strand at 897.223 kb on + strand at 897.224 kb on - strand at 897.224 kb on - strand at 897.224 kb on - strand at 897.224 kb on - strand at 897.224 kb on - strand at 897.230 kb on + strand at 897.231 kb on - strand at 897.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.5 remove 895,209 + sbm OKGIIK_04075 0.90 -0.9 895,209 + sbm OKGIIK_04075 0.90 +0.1 895,209 + sbm OKGIIK_04075 0.90 +0.2 895,209 + sbm OKGIIK_04075 0.90 -0.9 895,209 + sbm OKGIIK_04075 0.90 +0.1 895,209 + sbm OKGIIK_04075 0.90 -0.6 895,209 + sbm OKGIIK_04075 0.90 -2.4 895,209 + sbm OKGIIK_04075 0.90 +0.4 895,209 + sbm OKGIIK_04075 0.90 +1.2 895,209 + sbm OKGIIK_04075 0.90 -0.8 895,209 + sbm OKGIIK_04075 0.90 -0.6 895,210 - sbm OKGIIK_04075 0.90 +0.8 895,210 - sbm OKGIIK_04075 0.90 -0.6 895,210 - sbm OKGIIK_04075 0.90 -0.1 895,210 - sbm OKGIIK_04075 0.90 +0.4 895,210 - sbm OKGIIK_04075 0.90 +0.8 895,210 - sbm OKGIIK_04075 0.90 -0.2 895,210 - sbm OKGIIK_04075 0.90 -0.3 895,210 - sbm OKGIIK_04075 0.90 -1.6 895,242 + +0.0 895,242 + -0.4 895,242 + -0.3 895,242 + -0.3 895,242 + -0.2 895,242 + -1.0 895,242 + -0.3 895,242 + -0.3 895,242 + -0.0 895,242 + +0.1 895,243 - -0.6 895,243 - -1.0 895,243 - +0.3 895,243 - -1.6 895,245 + +1.4 895,245 + -0.4 895,245 + -1.8 895,246 - +0.4 895,246 - +0.8 895,246 - -0.9 895,246 - -0.2 895,292 + +0.4 895,292 + +1.0 895,292 + -1.9 895,292 + +1.8 895,292 + +0.8 895,293 - +2.3 895,293 - -0.9 895,293 - -1.4 895,293 - +0.7 895,293 - -0.5 895,293 - +0.3 895,427 + +0.2 895,427 + +1.7 895,427 + +0.5 895,427 + -2.2 895,428 - +0.7 895,428 - +1.8 895,428 - -0.7 895,533 + +1.4 895,533 + +0.1 895,533 + +0.2 895,533 + -0.4 895,533 + +1.4 895,533 + +0.5 895,533 + -0.6 895,533 + +0.4 895,534 - -1.4 895,534 - +0.7 895,552 - +0.1 895,566 + +0.6 895,566 + -0.6 895,566 + +0.0 895,566 + -2.0 895,566 + -0.9 895,566 + -1.2 895,566 + -0.2 895,566 + -1.0 895,566 + -1.7 895,566 + +0.0 895,567 - -1.0 895,567 - -1.7 895,567 - -1.6 895,567 - -0.1 895,567 - -0.0 895,567 - -0.4 895,567 - -0.3 895,567 - +0.1 895,567 - -0.5 895,567 - -0.6 895,598 + +0.8 895,598 + -0.7 895,598 + -0.6 895,599 - +0.2 895,599 - +1.4 895,599 - -0.8 895,602 + +1.9 895,602 + +0.9 895,602 + +2.1 895,602 + -1.5 895,602 + +0.9 895,602 + -1.3 895,602 + -0.2 895,602 + -1.7 895,602 + +0.3 895,602 + -0.2 895,602 + -1.7 895,602 + -0.4 895,602 + +2.4 895,602 + +0.3 895,602 + +1.2 895,603 - -0.7 895,603 - -1.6 895,603 - -0.3 895,603 - +0.0 895,603 - -1.4 895,603 - -3.4 895,603 - -1.6 895,603 - -0.4 895,603 - +0.4 895,614 + +0.7 895,614 + -1.4 895,614 + +2.7 895,614 + +1.1 895,614 + +1.4 895,615 - -0.7 895,615 - -1.4 895,615 - +0.7 895,642 + -0.9 895,642 + +1.0 895,642 + +1.0 895,642 + +0.4 895,642 + +0.3 895,642 + -0.2 895,642 + -0.6 895,642 + -0.6 895,643 - -0.4 895,643 - -0.9 895,643 - +0.2 895,643 - -0.6 895,643 - +0.3 895,643 - +0.2 895,643 - +0.1 895,653 + -0.2 895,653 + -0.7 895,653 + -0.8 895,654 - +1.5 895,654 - +0.3 895,654 - -1.2 895,654 - -1.4 895,654 - +1.0 895,654 - -1.9 895,654 - -0.3 895,835 + -0.7 895,835 + +0.1 895,835 + +1.0 895,835 + +1.1 895,835 + +0.0 895,836 - -0.3 895,836 - -0.2 895,836 - -0.2 895,836 - -1.9 896,046 + OKGIIK_04080 0.80 +0.0 896,046 + OKGIIK_04080 0.80 +1.4 896,046 + OKGIIK_04080 0.80 -2.0 896,046 + OKGIIK_04080 0.80 -0.3 896,046 + OKGIIK_04080 0.80 +0.9 896,046 + OKGIIK_04080 0.80 -1.4 896,046 + OKGIIK_04080 0.80 -1.6 896,046 + OKGIIK_04080 0.80 -0.7 896,046 + OKGIIK_04080 0.80 +0.7 896,046 + OKGIIK_04080 0.80 +1.0 896,047 - OKGIIK_04080 0.80 -0.7 896,047 - OKGIIK_04080 0.80 +0.2 896,047 - OKGIIK_04080 0.80 +0.2 896,047 - OKGIIK_04080 0.80 -0.3 896,047 - OKGIIK_04080 0.80 -1.3 896,101 + -0.4 896,101 + -0.6 896,101 + -0.6 896,101 + -1.2 896,101 + -0.9 896,102 - -0.6 896,102 - +0.3 896,102 - +0.4 896,121 + +0.7 896,121 + -0.3 896,121 + +0.4 896,122 - +0.4 896,122 - +1.0 896,122 - +0.0 896,122 - +0.7 896,161 + +0.9 896,161 + +0.9 896,161 + -0.9 896,162 - -1.0 896,197 - OKGIIK_04085 0.21 -0.2 896,197 - OKGIIK_04085 0.21 -1.1 896,306 + OKGIIK_04085 0.76 -0.1 896,341 + +1.3 896,341 + -0.2 896,341 + -0.3 896,341 + -0.5 896,341 + +0.4 896,341 + -0.7 896,342 - -1.7 896,342 - -0.2 896,342 - +1.0 896,342 - +1.2 896,342 - +1.4 896,342 - +0.1 896,342 - -0.0 896,342 - +0.2 896,342 - -1.0 896,342 - -0.2 896,342 - +0.0 896,342 - +0.3 896,342 - +0.6 896,342 - +0.3 896,342 - -1.7 896,342 - -0.2 896,342 - -1.4 896,342 - -0.2 896,342 - -0.4 896,343 + +0.0 896,343 + -0.6 896,343 + -0.2 896,343 + -0.5 896,343 + +0.1 896,343 + -0.3 896,344 - +0.7 896,344 - -0.9 896,344 - -0.9 896,344 - +0.1 896,344 - -1.6 896,344 - -1.2 896,344 - +0.9 896,396 - +1.4 896,443 + +0.7 896,452 - -1.6 896,461 + -0.6 896,463 + -0.2 896,465 + +0.4 896,465 + +0.8 896,465 + -2.4 896,466 - -0.2 896,469 + -1.0 896,502 + -1.2 896,502 + +0.7 896,503 - -1.3 896,558 + -1.0 896,612 - OKGIIK_04090 0.16 -0.7 896,622 - OKGIIK_04090 0.17 -0.7 896,633 + OKGIIK_04090 0.19 -0.1 896,634 - OKGIIK_04090 0.19 +1.7 896,634 - OKGIIK_04090 0.19 -0.0 896,634 - OKGIIK_04090 0.19 -1.4 896,635 + OKGIIK_04090 0.19 -0.6 896,635 + OKGIIK_04090 0.19 +0.4 896,636 - OKGIIK_04090 0.19 -1.0 896,684 + OKGIIK_04090 0.26 -0.3 896,685 - OKGIIK_04090 0.26 -0.9 896,695 - OKGIIK_04090 0.27 -0.5 896,895 + OKGIIK_04090 0.55 -0.5 896,896 - OKGIIK_04090 0.55 -1.1 896,896 - OKGIIK_04090 0.55 -2.0 896,916 + OKGIIK_04090 0.58 -0.5 896,961 - OKGIIK_04090 0.64 +1.1 897,026 - OKGIIK_04090 0.73 -1.8 897,027 + OKGIIK_04090 0.73 +0.7 897,028 - OKGIIK_04090 0.73 -0.1 897,028 - OKGIIK_04090 0.73 -0.6 897,121 + OKGIIK_04090 0.86 +0.4 897,121 + OKGIIK_04090 0.86 +0.6 897,121 + OKGIIK_04090 0.86 -0.0 897,121 + OKGIIK_04090 0.86 +0.4 897,121 + OKGIIK_04090 0.86 -0.1 897,121 + OKGIIK_04090 0.86 +1.3 897,121 + OKGIIK_04090 0.86 -0.4 897,121 + OKGIIK_04090 0.86 +1.4 897,121 + OKGIIK_04090 0.86 -0.3 897,122 - OKGIIK_04090 0.86 -0.9 897,122 - OKGIIK_04090 0.86 +0.2 897,122 - OKGIIK_04090 0.86 +0.4 897,122 - OKGIIK_04090 0.86 -0.7 897,122 - OKGIIK_04090 0.86 -2.3 897,122 - OKGIIK_04090 0.86 -1.3 897,122 - OKGIIK_04090 0.86 +0.0 897,122 - OKGIIK_04090 0.86 +1.0 897,122 - OKGIIK_04090 0.86 -0.4 897,122 - OKGIIK_04090 0.86 -0.8 897,206 - +0.4 897,206 - +1.1 897,223 + -1.0 897,223 + -1.6 897,224 - -0.9 897,224 - -2.7 897,224 - +0.7 897,224 - +0.7 897,224 - +0.3 897,230 + -2.3 897,231 - +0.2 897,241 - -2.1
Or see this region's nucleotide sequence