Experiment: R2A_PIPES pH 4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccdA and OKGIIK_03490 are separated by 126 nucleotides OKGIIK_03490 and OKGIIK_03495 overlap by 14 nucleotides OKGIIK_03495 and yajQ are separated by 108 nucleotides
OKGIIK_03485: ccdA - cytochrome C biogenesis protein, at 774,600 to 776,321
ccdA
OKGIIK_03490: OKGIIK_03490 - hypothetical protein, at 776,448 to 777,113
_03490
OKGIIK_03495: OKGIIK_03495 - hypothetical protein, at 777,100 to 777,771
_03495
OKGIIK_03500: yajQ - YajQ family cyclic di-GMP-binding protein, at 777,880 to 778,362
yajQ
Position (kb) 776
777
778 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 775.450 kb on + strand, within ccdA at 775.450 kb on + strand, within ccdA at 775.450 kb on + strand, within ccdA at 775.451 kb on - strand, within ccdA at 775.451 kb on - strand, within ccdA at 775.451 kb on - strand, within ccdA at 775.451 kb on - strand, within ccdA at 775.451 kb on - strand, within ccdA at 775.451 kb on - strand, within ccdA at 775.451 kb on - strand, within ccdA at 775.837 kb on + strand, within ccdA at 775.838 kb on - strand, within ccdA at 775.838 kb on - strand, within ccdA at 775.838 kb on - strand, within ccdA at 775.838 kb on - strand, within ccdA at 776.104 kb on + strand, within ccdA at 776.104 kb on + strand, within ccdA at 776.114 kb on - strand, within ccdA at 776.286 kb on + strand at 776.286 kb on + strand at 776.287 kb on - strand at 776.287 kb on - strand at 776.287 kb on - strand at 776.299 kb on + strand at 776.299 kb on + strand at 776.299 kb on + strand at 776.300 kb on - strand at 776.300 kb on - strand at 776.300 kb on - strand at 776.300 kb on - strand at 776.300 kb on - strand at 776.350 kb on - strand at 776.384 kb on + strand at 776.384 kb on + strand at 776.384 kb on + strand at 776.385 kb on - strand at 776.391 kb on + strand at 776.391 kb on + strand at 776.392 kb on - strand at 776.416 kb on + strand at 776.417 kb on - strand at 776.485 kb on + strand at 776.485 kb on + strand at 776.485 kb on + strand at 776.485 kb on + strand at 776.485 kb on + strand at 776.485 kb on + strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.486 kb on - strand at 776.489 kb on + strand at 776.489 kb on + strand at 776.489 kb on + strand at 776.489 kb on + strand at 776.489 kb on + strand at 776.489 kb on + strand at 776.489 kb on + strand at 776.489 kb on + strand at 776.489 kb on + strand at 776.490 kb on - strand at 776.490 kb on - strand at 776.490 kb on - strand at 776.490 kb on - strand at 776.490 kb on - strand at 776.490 kb on - strand at 776.622 kb on + strand, within OKGIIK_03490 at 776.622 kb on + strand, within OKGIIK_03490 at 776.623 kb on - strand, within OKGIIK_03490 at 776.623 kb on - strand, within OKGIIK_03490 at 776.623 kb on - strand, within OKGIIK_03490 at 776.623 kb on - strand, within OKGIIK_03490 at 776.751 kb on + strand, within OKGIIK_03490 at 776.751 kb on + strand, within OKGIIK_03490 at 776.751 kb on + strand, within OKGIIK_03490 at 776.751 kb on + strand, within OKGIIK_03490 at 776.751 kb on + strand, within OKGIIK_03490 at 776.752 kb on - strand, within OKGIIK_03490 at 776.752 kb on - strand, within OKGIIK_03490 at 776.752 kb on - strand, within OKGIIK_03490 at 776.752 kb on - strand, within OKGIIK_03490 at 776.752 kb on - strand, within OKGIIK_03490 at 776.752 kb on - strand, within OKGIIK_03490 at 776.752 kb on - strand, within OKGIIK_03490 at 776.769 kb on + strand, within OKGIIK_03490 at 776.769 kb on + strand, within OKGIIK_03490 at 776.769 kb on + strand, within OKGIIK_03490 at 776.770 kb on - strand, within OKGIIK_03490 at 777.722 kb on + strand at 777.722 kb on + strand at 777.723 kb on - strand at 777.788 kb on + strand at 777.788 kb on + strand at 777.788 kb on + strand at 777.788 kb on + strand at 777.788 kb on + strand at 777.788 kb on + strand at 777.788 kb on + strand at 777.788 kb on + strand at 777.788 kb on + strand at 777.789 kb on - strand at 777.789 kb on - strand at 777.789 kb on - strand at 777.789 kb on - strand at 777.789 kb on - strand at 777.789 kb on - strand at 777.789 kb on - strand at 777.789 kb on - strand at 777.861 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.5 remove 775,450 + ccdA OKGIIK_03485 0.49 +0.3 775,450 + ccdA OKGIIK_03485 0.49 +0.4 775,450 + ccdA OKGIIK_03485 0.49 -0.6 775,451 - ccdA OKGIIK_03485 0.49 -1.9 775,451 - ccdA OKGIIK_03485 0.49 -0.4 775,451 - ccdA OKGIIK_03485 0.49 -1.2 775,451 - ccdA OKGIIK_03485 0.49 +0.3 775,451 - ccdA OKGIIK_03485 0.49 -0.2 775,451 - ccdA OKGIIK_03485 0.49 -0.7 775,451 - ccdA OKGIIK_03485 0.49 -0.3 775,837 + ccdA OKGIIK_03485 0.72 -1.0 775,838 - ccdA OKGIIK_03485 0.72 -2.3 775,838 - ccdA OKGIIK_03485 0.72 +0.5 775,838 - ccdA OKGIIK_03485 0.72 +1.2 775,838 - ccdA OKGIIK_03485 0.72 +0.9 776,104 + ccdA OKGIIK_03485 0.87 -0.6 776,104 + ccdA OKGIIK_03485 0.87 -0.3 776,114 - ccdA OKGIIK_03485 0.88 -1.4 776,286 + -0.8 776,286 + -1.2 776,287 - +0.8 776,287 - -0.1 776,287 - +2.0 776,299 + +0.5 776,299 + -0.1 776,299 + -1.2 776,300 - -2.3 776,300 - -1.1 776,300 - -0.3 776,300 - +1.4 776,300 - -0.6 776,350 - -0.2 776,384 + -0.6 776,384 + +0.4 776,384 + +1.8 776,385 - -0.9 776,391 + -0.0 776,391 + -0.3 776,392 - +1.0 776,416 + +1.0 776,417 - +0.1 776,485 + +0.0 776,485 + -1.1 776,485 + -0.5 776,485 + -0.7 776,485 + +0.4 776,485 + -1.4 776,486 - +0.1 776,486 - +2.0 776,486 - -1.4 776,486 - +0.9 776,486 - -1.1 776,486 - -0.6 776,486 - -1.4 776,486 - +1.4 776,486 - -0.1 776,486 - -0.0 776,486 - -0.4 776,486 - -0.2 776,486 - +0.7 776,486 - -0.9 776,486 - +0.7 776,486 - -0.1 776,489 + -0.7 776,489 + +0.2 776,489 + +0.6 776,489 + -0.2 776,489 + +1.4 776,489 + +1.7 776,489 + -0.0 776,489 + +0.7 776,489 + -1.2 776,490 - +0.4 776,490 - -0.9 776,490 - +0.5 776,490 - -0.3 776,490 - -1.4 776,490 - +0.1 776,622 + OKGIIK_03490 0.26 +0.3 776,622 + OKGIIK_03490 0.26 -0.9 776,623 - OKGIIK_03490 0.26 -0.1 776,623 - OKGIIK_03490 0.26 +0.4 776,623 - OKGIIK_03490 0.26 -0.9 776,623 - OKGIIK_03490 0.26 +1.3 776,751 + OKGIIK_03490 0.45 -0.3 776,751 + OKGIIK_03490 0.45 +1.7 776,751 + OKGIIK_03490 0.45 -0.5 776,751 + OKGIIK_03490 0.45 +0.1 776,751 + OKGIIK_03490 0.45 +0.1 776,752 - OKGIIK_03490 0.46 -1.2 776,752 - OKGIIK_03490 0.46 -0.7 776,752 - OKGIIK_03490 0.46 -0.6 776,752 - OKGIIK_03490 0.46 -3.4 776,752 - OKGIIK_03490 0.46 +1.0 776,752 - OKGIIK_03490 0.46 -0.7 776,752 - OKGIIK_03490 0.46 -0.8 776,769 + OKGIIK_03490 0.48 +1.1 776,769 + OKGIIK_03490 0.48 +0.4 776,769 + OKGIIK_03490 0.48 +0.1 776,770 - OKGIIK_03490 0.48 -0.1 777,722 + +1.6 777,722 + -0.9 777,723 - -0.6 777,788 + -0.9 777,788 + -0.5 777,788 + -0.6 777,788 + -0.1 777,788 + +2.0 777,788 + -2.1 777,788 + +0.5 777,788 + -0.8 777,788 + +0.1 777,789 - -0.8 777,789 - +1.1 777,789 - -1.1 777,789 - +0.4 777,789 - -1.2 777,789 - +0.2 777,789 - +0.7 777,789 - -0.1 777,861 + +0.1
Or see this region's nucleotide sequence