Experiment: R2A_PIPES pH 4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgF and flgG are separated by 42 nucleotides flgG and flgH are separated by 11 nucleotides flgH and flgI are separated by 98 nucleotides
OKGIIK_02670: flgF - flagellar basal-body rod protein FlgF, at 620,204 to 620,944
flgF
OKGIIK_02675: flgG - flagellar basal-body rod protein FlgG, at 620,987 to 621,772
flgG
OKGIIK_02680: flgH - flagellar basal body L-ring protein FlgH, at 621,784 to 622,464
flgH
OKGIIK_02685: flgI - Flagellar basal body P-ring protein FlgI, at 622,563 to 623,732
flgI
Position (kb) 621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 620.867 kb on + strand, within flgF at 620.867 kb on + strand, within flgF at 621.087 kb on - strand, within flgG at 621.087 kb on - strand, within flgG at 621.122 kb on + strand, within flgG at 621.122 kb on + strand, within flgG at 621.123 kb on - strand, within flgG at 621.123 kb on - strand, within flgG at 621.326 kb on + strand, within flgG at 621.326 kb on + strand, within flgG at 621.326 kb on + strand, within flgG at 621.326 kb on + strand, within flgG at 621.327 kb on - strand, within flgG at 621.327 kb on - strand, within flgG at 621.327 kb on - strand, within flgG at 621.327 kb on - strand, within flgG at 621.327 kb on - strand, within flgG at 621.327 kb on - strand, within flgG at 621.328 kb on + strand, within flgG at 621.328 kb on + strand, within flgG at 621.328 kb on + strand, within flgG at 621.329 kb on - strand, within flgG at 621.462 kb on + strand, within flgG at 621.462 kb on + strand, within flgG at 621.462 kb on + strand, within flgG at 621.462 kb on + strand, within flgG at 621.462 kb on + strand, within flgG at 621.463 kb on - strand, within flgG at 621.463 kb on - strand, within flgG at 621.463 kb on - strand, within flgG at 621.463 kb on - strand, within flgG at 621.560 kb on + strand, within flgG at 621.560 kb on + strand, within flgG at 621.561 kb on - strand, within flgG at 621.704 kb on + strand at 621.704 kb on + strand at 621.704 kb on + strand at 621.705 kb on - strand at 621.705 kb on - strand at 621.705 kb on - strand at 621.705 kb on - strand at 621.934 kb on + strand, within flgH at 621.934 kb on + strand, within flgH at 621.934 kb on + strand, within flgH at 621.934 kb on + strand, within flgH at 621.935 kb on - strand, within flgH at 622.381 kb on + strand, within flgH at 622.381 kb on + strand, within flgH at 622.382 kb on - strand, within flgH at 622.382 kb on - strand, within flgH at 622.382 kb on - strand, within flgH at 622.382 kb on - strand, within flgH at 622.382 kb on - strand, within flgH at 622.489 kb on + strand at 622.489 kb on + strand at 622.489 kb on + strand at 622.489 kb on + strand at 622.489 kb on + strand at 622.490 kb on - strand at 622.490 kb on - strand at 622.490 kb on - strand at 622.639 kb on + strand at 622.639 kb on + strand at 622.639 kb on + strand at 622.639 kb on + strand at 622.639 kb on + strand at 622.639 kb on + strand at 622.639 kb on + strand at 622.640 kb on - strand at 622.640 kb on - strand at 622.640 kb on - strand at 622.640 kb on - strand at 622.640 kb on - strand at 622.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.5 remove 620,867 + flgF OKGIIK_02670 0.89 -1.5 620,867 + flgF OKGIIK_02670 0.89 +0.3 621,087 - flgG OKGIIK_02675 0.13 -0.3 621,087 - flgG OKGIIK_02675 0.13 -0.3 621,122 + flgG OKGIIK_02675 0.17 +1.6 621,122 + flgG OKGIIK_02675 0.17 -0.8 621,123 - flgG OKGIIK_02675 0.17 -2.6 621,123 - flgG OKGIIK_02675 0.17 +0.3 621,326 + flgG OKGIIK_02675 0.43 +0.3 621,326 + flgG OKGIIK_02675 0.43 +0.1 621,326 + flgG OKGIIK_02675 0.43 -0.8 621,326 + flgG OKGIIK_02675 0.43 +0.1 621,327 - flgG OKGIIK_02675 0.43 -0.1 621,327 - flgG OKGIIK_02675 0.43 -0.4 621,327 - flgG OKGIIK_02675 0.43 -2.3 621,327 - flgG OKGIIK_02675 0.43 -0.3 621,327 - flgG OKGIIK_02675 0.43 -1.8 621,327 - flgG OKGIIK_02675 0.43 -0.5 621,328 + flgG OKGIIK_02675 0.43 -0.2 621,328 + flgG OKGIIK_02675 0.43 +0.3 621,328 + flgG OKGIIK_02675 0.43 +0.3 621,329 - flgG OKGIIK_02675 0.44 +0.5 621,462 + flgG OKGIIK_02675 0.60 -0.4 621,462 + flgG OKGIIK_02675 0.60 -0.8 621,462 + flgG OKGIIK_02675 0.60 +0.3 621,462 + flgG OKGIIK_02675 0.60 +0.1 621,462 + flgG OKGIIK_02675 0.60 +1.0 621,463 - flgG OKGIIK_02675 0.61 -0.2 621,463 - flgG OKGIIK_02675 0.61 +0.3 621,463 - flgG OKGIIK_02675 0.61 -0.1 621,463 - flgG OKGIIK_02675 0.61 +0.3 621,560 + flgG OKGIIK_02675 0.73 -0.5 621,560 + flgG OKGIIK_02675 0.73 -0.7 621,561 - flgG OKGIIK_02675 0.73 +0.3 621,704 + +1.6 621,704 + -1.4 621,704 + +0.5 621,705 - -0.5 621,705 - +0.3 621,705 - -2.0 621,705 - +1.1 621,934 + flgH OKGIIK_02680 0.22 -2.9 621,934 + flgH OKGIIK_02680 0.22 +0.0 621,934 + flgH OKGIIK_02680 0.22 -0.1 621,934 + flgH OKGIIK_02680 0.22 +1.1 621,935 - flgH OKGIIK_02680 0.22 -2.0 622,381 + flgH OKGIIK_02680 0.88 -3.1 622,381 + flgH OKGIIK_02680 0.88 -0.6 622,382 - flgH OKGIIK_02680 0.88 -0.5 622,382 - flgH OKGIIK_02680 0.88 +0.0 622,382 - flgH OKGIIK_02680 0.88 +0.6 622,382 - flgH OKGIIK_02680 0.88 +0.4 622,382 - flgH OKGIIK_02680 0.88 +0.5 622,489 + +0.5 622,489 + -0.1 622,489 + -1.8 622,489 + -0.1 622,489 + +0.8 622,490 - -0.5 622,490 - -1.5 622,490 - +0.6 622,639 + -0.9 622,639 + +1.6 622,639 + +0.0 622,639 + +0.9 622,639 + -1.3 622,639 + -0.3 622,639 + +0.3 622,640 - -0.6 622,640 - +0.8 622,640 - -1.0 622,640 - +0.2 622,640 - +0.6 622,640 - +0.3
Or see this region's nucleotide sequence