Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06983 and MPMX19_06984 overlap by 4 nucleotides MPMX19_06984 and MPMX19_06985 overlap by 4 nucleotides MPMX19_06985 and MPMX19_06986 are separated by 78 nucleotides
MPMX19_06983: MPMX19_06983 - putative FAD-linked oxidoreductase, at 264,908 to 266,422
_06983
MPMX19_06984: MPMX19_06984 - Mesaconyl-C(4)-CoA hydratase, at 266,419 to 267,294
_06984
MPMX19_06985: MPMX19_06985 - L-malyl-CoA/beta-methylmalyl-CoA lyase, at 267,291 to 268,199
_06985
MPMX19_06986: MPMX19_06986 - sugar efflux transporter, at 268,278 to 269,516
_06986
Position (kb) 266
267
268 Strain fitness (log2 ratio) -2
-1
0
1
2 at 265.439 kb on + strand, within MPMX19_06983 at 265.539 kb on - strand, within MPMX19_06983 at 265.808 kb on + strand, within MPMX19_06983 at 265.808 kb on + strand, within MPMX19_06983 at 265.808 kb on + strand, within MPMX19_06983 at 265.809 kb on - strand, within MPMX19_06983 at 265.809 kb on - strand, within MPMX19_06983 at 265.809 kb on - strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.133 kb on - strand, within MPMX19_06983 at 266.133 kb on - strand, within MPMX19_06983 at 266.133 kb on - strand, within MPMX19_06983 at 266.133 kb on - strand, within MPMX19_06983 at 266.289 kb on - strand at 266.425 kb on + strand at 266.822 kb on + strand, within MPMX19_06984 at 266.822 kb on + strand, within MPMX19_06984 at 266.822 kb on + strand, within MPMX19_06984 at 266.823 kb on - strand, within MPMX19_06984 at 266.823 kb on - strand, within MPMX19_06984 at 266.998 kb on + strand, within MPMX19_06984 at 266.999 kb on - strand, within MPMX19_06984 at 266.999 kb on - strand, within MPMX19_06984 at 267.031 kb on + strand, within MPMX19_06984 at 268.006 kb on + strand, within MPMX19_06985 at 268.006 kb on + strand, within MPMX19_06985 at 268.007 kb on - strand, within MPMX19_06985 at 268.007 kb on - strand, within MPMX19_06985 at 268.065 kb on - strand, within MPMX19_06985 at 268.197 kb on + strand at 268.198 kb on - strand at 268.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 265,439 + MPMX19_06983 0.35 -1.0 265,539 - MPMX19_06983 0.42 -0.5 265,808 + MPMX19_06983 0.59 -0.6 265,808 + MPMX19_06983 0.59 -0.5 265,808 + MPMX19_06983 0.59 -1.6 265,809 - MPMX19_06983 0.59 +2.1 265,809 - MPMX19_06983 0.59 -2.3 265,809 - MPMX19_06983 0.59 -0.2 266,132 + MPMX19_06983 0.81 -1.3 266,132 + MPMX19_06983 0.81 -0.9 266,132 + MPMX19_06983 0.81 -1.0 266,132 + MPMX19_06983 0.81 -0.9 266,132 + MPMX19_06983 0.81 -1.4 266,133 - MPMX19_06983 0.81 +0.3 266,133 - MPMX19_06983 0.81 +0.1 266,133 - MPMX19_06983 0.81 -0.6 266,133 - MPMX19_06983 0.81 -0.8 266,289 - -0.7 266,425 + +0.4 266,822 + MPMX19_06984 0.46 -0.4 266,822 + MPMX19_06984 0.46 -0.7 266,822 + MPMX19_06984 0.46 -0.1 266,823 - MPMX19_06984 0.46 +0.6 266,823 - MPMX19_06984 0.46 -1.6 266,998 + MPMX19_06984 0.66 -0.2 266,999 - MPMX19_06984 0.66 +0.5 266,999 - MPMX19_06984 0.66 +0.3 267,031 + MPMX19_06984 0.70 +0.5 268,006 + MPMX19_06985 0.79 -0.2 268,006 + MPMX19_06985 0.79 +1.2 268,007 - MPMX19_06985 0.79 +1.3 268,007 - MPMX19_06985 0.79 -0.4 268,065 - MPMX19_06985 0.85 -1.0 268,197 + -0.3 268,198 - -0.2 268,198 - +0.0
Or see this region's nucleotide sequence