Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06983

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06982 and MPMX19_06983 are separated by 29 nucleotidesMPMX19_06983 and MPMX19_06984 overlap by 4 nucleotidesMPMX19_06984 and MPMX19_06985 overlap by 4 nucleotides MPMX19_06982: MPMX19_06982 - Aldehyde dehydrogenase, thermostable, at 263,424 to 264,878 _06982 MPMX19_06983: MPMX19_06983 - putative FAD-linked oxidoreductase, at 264,908 to 266,422 _06983 MPMX19_06984: MPMX19_06984 - Mesaconyl-C(4)-CoA hydratase, at 266,419 to 267,294 _06984 MPMX19_06985: MPMX19_06985 - L-malyl-CoA/beta-methylmalyl-CoA lyase, at 267,291 to 268,199 _06985 Position (kb) 264 265 266 267Strain fitness (log2 ratio) -2 -1 0 1 2at 264.261 kb on + strand, within MPMX19_06982at 264.261 kb on + strand, within MPMX19_06982at 264.261 kb on + strand, within MPMX19_06982at 264.261 kb on + strand, within MPMX19_06982at 264.262 kb on - strand, within MPMX19_06982at 264.444 kb on + strand, within MPMX19_06982at 264.444 kb on + strand, within MPMX19_06982at 264.444 kb on + strand, within MPMX19_06982at 264.444 kb on + strand, within MPMX19_06982at 264.444 kb on + strand, within MPMX19_06982at 264.444 kb on + strand, within MPMX19_06982at 264.444 kb on + strand, within MPMX19_06982at 264.444 kb on + strand, within MPMX19_06982at 264.444 kb on + strand, within MPMX19_06982at 264.445 kb on - strand, within MPMX19_06982at 264.445 kb on - strand, within MPMX19_06982at 264.445 kb on - strand, within MPMX19_06982at 264.445 kb on - strand, within MPMX19_06982at 264.445 kb on - strand, within MPMX19_06982at 264.445 kb on - strand, within MPMX19_06982at 264.445 kb on - strand, within MPMX19_06982at 264.621 kb on + strand, within MPMX19_06982at 264.621 kb on + strand, within MPMX19_06982at 264.621 kb on + strand, within MPMX19_06982at 264.621 kb on + strand, within MPMX19_06982at 264.622 kb on - strand, within MPMX19_06982at 264.677 kb on + strand, within MPMX19_06982at 264.677 kb on + strand, within MPMX19_06982at 264.678 kb on - strand, within MPMX19_06982at 264.678 kb on - strand, within MPMX19_06982at 264.678 kb on - strand, within MPMX19_06982at 264.678 kb on - strand, within MPMX19_06982at 264.768 kb on + strandat 264.769 kb on - strandat 264.769 kb on - strandat 264.769 kb on - strandat 264.805 kb on - strandat 264.805 kb on - strandat 264.843 kb on + strandat 264.843 kb on + strandat 264.843 kb on + strandat 264.843 kb on + strandat 264.844 kb on - strandat 264.864 kb on + strandat 264.864 kb on + strandat 264.992 kb on - strandat 265.439 kb on + strand, within MPMX19_06983at 265.539 kb on - strand, within MPMX19_06983at 265.808 kb on + strand, within MPMX19_06983at 265.808 kb on + strand, within MPMX19_06983at 265.808 kb on + strand, within MPMX19_06983at 265.809 kb on - strand, within MPMX19_06983at 265.809 kb on - strand, within MPMX19_06983at 265.809 kb on - strand, within MPMX19_06983at 266.132 kb on + strand, within MPMX19_06983at 266.132 kb on + strand, within MPMX19_06983at 266.132 kb on + strand, within MPMX19_06983at 266.132 kb on + strand, within MPMX19_06983at 266.132 kb on + strand, within MPMX19_06983at 266.133 kb on - strand, within MPMX19_06983at 266.133 kb on - strand, within MPMX19_06983at 266.133 kb on - strand, within MPMX19_06983at 266.133 kb on - strand, within MPMX19_06983at 266.289 kb on - strandat 266.425 kb on + strandat 266.822 kb on + strand, within MPMX19_06984at 266.822 kb on + strand, within MPMX19_06984at 266.822 kb on + strand, within MPMX19_06984at 266.823 kb on - strand, within MPMX19_06984at 266.823 kb on - strand, within MPMX19_06984at 266.998 kb on + strand, within MPMX19_06984at 266.999 kb on - strand, within MPMX19_06984at 266.999 kb on - strand, within MPMX19_06984at 267.031 kb on + strand, within MPMX19_06984

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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264,261 + MPMX19_06982 0.58 +1.5
264,261 + MPMX19_06982 0.58 +0.4
264,261 + MPMX19_06982 0.58 +0.1
264,261 + MPMX19_06982 0.58 -1.3
264,262 - MPMX19_06982 0.58 -0.7
264,444 + MPMX19_06982 0.70 -0.2
264,444 + MPMX19_06982 0.70 -0.1
264,444 + MPMX19_06982 0.70 -1.4
264,444 + MPMX19_06982 0.70 -1.6
264,444 + MPMX19_06982 0.70 -0.7
264,444 + MPMX19_06982 0.70 -2.3
264,444 + MPMX19_06982 0.70 +0.7
264,444 + MPMX19_06982 0.70 +0.6
264,444 + MPMX19_06982 0.70 -0.5
264,445 - MPMX19_06982 0.70 +0.1
264,445 - MPMX19_06982 0.70 -0.7
264,445 - MPMX19_06982 0.70 -0.6
264,445 - MPMX19_06982 0.70 +0.1
264,445 - MPMX19_06982 0.70 -0.4
264,445 - MPMX19_06982 0.70 -0.4
264,445 - MPMX19_06982 0.70 -0.9
264,621 + MPMX19_06982 0.82 -1.1
264,621 + MPMX19_06982 0.82 +0.5
264,621 + MPMX19_06982 0.82 -0.5
264,621 + MPMX19_06982 0.82 -1.1
264,622 - MPMX19_06982 0.82 -0.7
264,677 + MPMX19_06982 0.86 -0.9
264,677 + MPMX19_06982 0.86 +0.2
264,678 - MPMX19_06982 0.86 -1.5
264,678 - MPMX19_06982 0.86 -0.9
264,678 - MPMX19_06982 0.86 -0.7
264,678 - MPMX19_06982 0.86 -0.5
264,768 + +0.7
264,769 - -0.1
264,769 - -1.2
264,769 - -0.9
264,805 - -0.7
264,805 - +1.1
264,843 + -0.4
264,843 + +0.2
264,843 + +0.1
264,843 + -2.2
264,844 - +0.1
264,864 + -1.0
264,864 + -1.6
264,992 - -0.6
265,439 + MPMX19_06983 0.35 -1.0
265,539 - MPMX19_06983 0.42 -0.5
265,808 + MPMX19_06983 0.59 -0.6
265,808 + MPMX19_06983 0.59 -0.5
265,808 + MPMX19_06983 0.59 -1.6
265,809 - MPMX19_06983 0.59 +2.1
265,809 - MPMX19_06983 0.59 -2.3
265,809 - MPMX19_06983 0.59 -0.2
266,132 + MPMX19_06983 0.81 -1.3
266,132 + MPMX19_06983 0.81 -0.9
266,132 + MPMX19_06983 0.81 -1.0
266,132 + MPMX19_06983 0.81 -0.9
266,132 + MPMX19_06983 0.81 -1.4
266,133 - MPMX19_06983 0.81 +0.3
266,133 - MPMX19_06983 0.81 +0.1
266,133 - MPMX19_06983 0.81 -0.6
266,133 - MPMX19_06983 0.81 -0.8
266,289 - -0.7
266,425 + +0.4
266,822 + MPMX19_06984 0.46 -0.4
266,822 + MPMX19_06984 0.46 -0.7
266,822 + MPMX19_06984 0.46 -0.1
266,823 - MPMX19_06984 0.46 +0.6
266,823 - MPMX19_06984 0.46 -1.6
266,998 + MPMX19_06984 0.66 -0.2
266,999 - MPMX19_06984 0.66 +0.5
266,999 - MPMX19_06984 0.66 +0.3
267,031 + MPMX19_06984 0.70 +0.5

Or see this region's nucleotide sequence