Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06964

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06963 and MPMX19_06964 are separated by 160 nucleotidesMPMX19_06964 and MPMX19_06965 are separated by 441 nucleotidesMPMX19_06965 and MPMX19_06966 are separated by 62 nucleotides MPMX19_06963: MPMX19_06963 - (Z)-2-((N-methylformamido)methylene)-5- hydroxybutyrolactone dehydrogenase, at 240,053 to 241,531 _06963 MPMX19_06964: MPMX19_06964 - HTH-type transcriptional regulator KipR, at 241,692 to 242,456 _06964 MPMX19_06965: MPMX19_06965 - hypothetical protein, at 242,898 to 243,314 _06965 MPMX19_06966: MPMX19_06966 - hypothetical protein, at 243,377 to 244,135 _06966 Position (kb) 241 242 243Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 240.996 kb on + strand, within MPMX19_06963at 240.996 kb on + strand, within MPMX19_06963at 240.996 kb on + strand, within MPMX19_06963at 240.996 kb on + strand, within MPMX19_06963at 240.997 kb on - strand, within MPMX19_06963at 240.997 kb on - strand, within MPMX19_06963at 240.997 kb on - strand, within MPMX19_06963at 240.997 kb on - strand, within MPMX19_06963at 241.117 kb on - strand, within MPMX19_06963at 241.117 kb on - strand, within MPMX19_06963at 241.117 kb on - strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.125 kb on + strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.126 kb on - strand, within MPMX19_06963at 241.191 kb on + strand, within MPMX19_06963at 241.191 kb on + strand, within MPMX19_06963at 241.191 kb on + strand, within MPMX19_06963at 241.191 kb on + strand, within MPMX19_06963at 241.192 kb on - strand, within MPMX19_06963at 241.192 kb on - strand, within MPMX19_06963at 241.192 kb on - strand, within MPMX19_06963at 241.192 kb on - strand, within MPMX19_06963at 241.192 kb on - strand, within MPMX19_06963at 241.192 kb on - strand, within MPMX19_06963at 241.194 kb on + strand, within MPMX19_06963at 241.194 kb on + strand, within MPMX19_06963at 241.195 kb on - strand, within MPMX19_06963at 241.195 kb on - strand, within MPMX19_06963at 241.195 kb on - strand, within MPMX19_06963at 241.195 kb on - strand, within MPMX19_06963at 241.195 kb on - strand, within MPMX19_06963at 241.195 kb on - strand, within MPMX19_06963at 241.521 kb on + strandat 241.521 kb on + strandat 241.521 kb on + strandat 241.521 kb on + strandat 241.522 kb on - strandat 241.522 kb on - strandat 241.522 kb on - strandat 241.522 kb on - strandat 241.522 kb on - strandat 241.522 kb on - strandat 241.522 kb on - strandat 241.522 kb on - strandat 241.720 kb on - strandat 241.720 kb on - strandat 241.866 kb on + strand, within MPMX19_06964at 241.866 kb on + strand, within MPMX19_06964at 241.867 kb on - strand, within MPMX19_06964at 241.867 kb on - strand, within MPMX19_06964at 241.915 kb on - strand, within MPMX19_06964at 241.915 kb on - strand, within MPMX19_06964at 241.980 kb on + strand, within MPMX19_06964at 241.980 kb on + strand, within MPMX19_06964at 241.980 kb on + strand, within MPMX19_06964at 241.980 kb on + strand, within MPMX19_06964at 241.981 kb on - strand, within MPMX19_06964at 241.981 kb on - strand, within MPMX19_06964at 241.981 kb on - strand, within MPMX19_06964at 241.981 kb on - strand, within MPMX19_06964at 242.454 kb on + strandat 242.454 kb on + strandat 242.454 kb on + strandat 242.455 kb on - strandat 242.455 kb on - strandat 242.897 kb on - strandat 243.312 kb on + strandat 243.312 kb on + strandat 243.313 kb on - strandat 243.313 kb on - strandat 243.313 kb on - strandat 243.398 kb on + strandat 243.398 kb on + strandat 243.399 kb on - strandat 243.399 kb on - strandat 243.399 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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240,996 + MPMX19_06963 0.64 -0.5
240,996 + MPMX19_06963 0.64 -0.2
240,996 + MPMX19_06963 0.64 -0.3
240,996 + MPMX19_06963 0.64 -0.0
240,997 - MPMX19_06963 0.64 -0.9
240,997 - MPMX19_06963 0.64 +0.3
240,997 - MPMX19_06963 0.64 -2.9
240,997 - MPMX19_06963 0.64 -0.6
241,117 - MPMX19_06963 0.72 -1.7
241,117 - MPMX19_06963 0.72 -1.4
241,117 - MPMX19_06963 0.72 -0.2
241,125 + MPMX19_06963 0.72 -1.1
241,125 + MPMX19_06963 0.72 -1.5
241,125 + MPMX19_06963 0.72 +0.3
241,125 + MPMX19_06963 0.72 -0.7
241,125 + MPMX19_06963 0.72 -0.7
241,125 + MPMX19_06963 0.72 +0.1
241,125 + MPMX19_06963 0.72 +0.5
241,125 + MPMX19_06963 0.72 -0.3
241,125 + MPMX19_06963 0.72 +0.4
241,125 + MPMX19_06963 0.72 -1.2
241,125 + MPMX19_06963 0.72 -1.8
241,125 + MPMX19_06963 0.72 -0.4
241,126 - MPMX19_06963 0.73 -0.4
241,126 - MPMX19_06963 0.73 -0.5
241,126 - MPMX19_06963 0.73 -0.1
241,126 - MPMX19_06963 0.73 +0.3
241,126 - MPMX19_06963 0.73 -2.1
241,126 - MPMX19_06963 0.73 -2.1
241,126 - MPMX19_06963 0.73 +0.8
241,126 - MPMX19_06963 0.73 -0.3
241,126 - MPMX19_06963 0.73 +0.5
241,191 + MPMX19_06963 0.77 -2.2
241,191 + MPMX19_06963 0.77 +0.5
241,191 + MPMX19_06963 0.77 -0.0
241,191 + MPMX19_06963 0.77 +0.8
241,192 - MPMX19_06963 0.77 +0.8
241,192 - MPMX19_06963 0.77 +0.1
241,192 - MPMX19_06963 0.77 +0.1
241,192 - MPMX19_06963 0.77 -1.5
241,192 - MPMX19_06963 0.77 +1.8
241,192 - MPMX19_06963 0.77 -0.5
241,194 + MPMX19_06963 0.77 -0.5
241,194 + MPMX19_06963 0.77 +1.1
241,195 - MPMX19_06963 0.77 -0.1
241,195 - MPMX19_06963 0.77 -0.4
241,195 - MPMX19_06963 0.77 -1.1
241,195 - MPMX19_06963 0.77 -1.7
241,195 - MPMX19_06963 0.77 +0.5
241,195 - MPMX19_06963 0.77 +0.4
241,521 + -0.7
241,521 + -0.5
241,521 + -0.2
241,521 + +0.8
241,522 - -1.2
241,522 - +0.1
241,522 - -0.1
241,522 - -0.0
241,522 - +0.1
241,522 - -2.4
241,522 - -0.2
241,522 - -0.9
241,720 - -1.2
241,720 - +0.3
241,866 + MPMX19_06964 0.23 +0.9
241,866 + MPMX19_06964 0.23 -0.8
241,867 - MPMX19_06964 0.23 -0.2
241,867 - MPMX19_06964 0.23 -0.0
241,915 - MPMX19_06964 0.29 -1.2
241,915 - MPMX19_06964 0.29 -0.2
241,980 + MPMX19_06964 0.38 -0.8
241,980 + MPMX19_06964 0.38 +1.8
241,980 + MPMX19_06964 0.38 +0.7
241,980 + MPMX19_06964 0.38 -0.1
241,981 - MPMX19_06964 0.38 -0.8
241,981 - MPMX19_06964 0.38 -0.6
241,981 - MPMX19_06964 0.38 +1.8
241,981 - MPMX19_06964 0.38 +0.2
242,454 + +0.1
242,454 + -1.0
242,454 + +0.7
242,455 - -1.8
242,455 - +0.3
242,897 - +0.1
243,312 + +0.5
243,312 + +0.1
243,313 - +0.7
243,313 - -0.4
243,313 - -2.5
243,398 + -0.5
243,398 + -0.9
243,399 - -0.4
243,399 - -1.5
243,399 - -1.3

Or see this region's nucleotide sequence