Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06958 and MPMX19_06959 are separated by 164 nucleotides MPMX19_06959 and MPMX19_06960 are separated by 48 nucleotides
MPMX19_06958: MPMX19_06958 - Citrate synthase 1, at 233,843 to 234,931
_06958
MPMX19_06959: MPMX19_06959 - hypothetical protein, at 235,096 to 236,325
_06959
MPMX19_06960: MPMX19_06960 - Urocanate reductase, at 236,374 to 237,855
_06960
Position (kb) 235
236
237 Strain fitness (log2 ratio) -2
-1
0
1
2 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.468 kb on + strand, within MPMX19_06958 at 234.468 kb on + strand, within MPMX19_06958 at 234.469 kb on - strand, within MPMX19_06958 at 234.469 kb on - strand, within MPMX19_06958 at 234.826 kb on - strand at 235.031 kb on + strand at 235.031 kb on + strand at 235.031 kb on + strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.038 kb on - strand at 235.049 kb on + strand at 235.049 kb on + strand at 235.049 kb on + strand at 235.050 kb on - strand at 235.059 kb on + strand at 235.059 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.098 kb on - strand at 235.098 kb on - strand at 235.098 kb on - strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.181 kb on + strand at 235.181 kb on + strand at 235.181 kb on + strand at 235.182 kb on - strand at 235.182 kb on - strand at 235.182 kb on - strand at 235.229 kb on + strand, within MPMX19_06959 at 235.229 kb on + strand, within MPMX19_06959 at 235.229 kb on + strand, within MPMX19_06959 at 235.229 kb on + strand, within MPMX19_06959 at 235.230 kb on - strand, within MPMX19_06959 at 235.382 kb on + strand, within MPMX19_06959 at 235.383 kb on - strand, within MPMX19_06959 at 235.383 kb on - strand, within MPMX19_06959 at 235.397 kb on + strand, within MPMX19_06959 at 235.397 kb on + strand, within MPMX19_06959 at 235.398 kb on - strand, within MPMX19_06959 at 235.472 kb on + strand, within MPMX19_06959 at 235.472 kb on + strand, within MPMX19_06959 at 235.472 kb on + strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.787 kb on + strand, within MPMX19_06959 at 235.788 kb on - strand, within MPMX19_06959 at 235.788 kb on - strand, within MPMX19_06959 at 235.788 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.862 kb on + strand, within MPMX19_06959 at 235.862 kb on + strand, within MPMX19_06959 at 235.862 kb on + strand, within MPMX19_06959 at 235.863 kb on - strand, within MPMX19_06959 at 235.863 kb on - strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.872 kb on - strand, within MPMX19_06959 at 235.872 kb on - strand, within MPMX19_06959 at 236.036 kb on + strand, within MPMX19_06959 at 236.036 kb on + strand, within MPMX19_06959 at 236.037 kb on - strand, within MPMX19_06959 at 236.237 kb on + strand at 236.237 kb on + strand at 236.338 kb on - strand at 236.343 kb on + strand at 236.344 kb on - strand at 236.365 kb on + strand at 236.365 kb on + strand at 236.365 kb on + strand at 236.366 kb on - strand at 236.366 kb on - strand at 236.366 kb on - strand at 236.366 kb on - strand at 236.366 kb on - strand at 236.458 kb on - strand at 236.459 kb on + strand at 236.459 kb on + strand at 236.459 kb on + strand at 236.459 kb on + strand at 236.459 kb on + strand at 236.460 kb on - strand at 236.460 kb on - strand at 236.460 kb on - strand at 236.460 kb on - strand at 236.460 kb on - strand at 236.460 kb on - strand at 236.471 kb on + strand at 236.498 kb on + strand at 236.498 kb on + strand at 236.499 kb on - strand at 236.726 kb on + strand, within MPMX19_06960 at 236.727 kb on - strand, within MPMX19_06960 at 236.727 kb on - strand, within MPMX19_06960 at 236.876 kb on + strand, within MPMX19_06960 at 236.876 kb on + strand, within MPMX19_06960 at 236.876 kb on + strand, within MPMX19_06960 at 236.876 kb on + strand, within MPMX19_06960 at 236.876 kb on + strand, within MPMX19_06960 at 236.876 kb on + strand, within MPMX19_06960 at 236.877 kb on - strand, within MPMX19_06960 at 236.877 kb on - strand, within MPMX19_06960 at 236.877 kb on - strand, within MPMX19_06960 at 236.877 kb on - strand, within MPMX19_06960 at 236.877 kb on - strand, within MPMX19_06960 at 236.877 kb on - strand, within MPMX19_06960 at 236.877 kb on - strand, within MPMX19_06960 at 236.924 kb on + strand, within MPMX19_06960 at 236.924 kb on + strand, within MPMX19_06960 at 236.924 kb on + strand, within MPMX19_06960 at 236.924 kb on + strand, within MPMX19_06960 at 236.924 kb on + strand, within MPMX19_06960 at 236.924 kb on + strand, within MPMX19_06960 at 236.924 kb on + strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.925 kb on - strand, within MPMX19_06960 at 236.994 kb on - strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.056 kb on + strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.057 kb on - strand, within MPMX19_06960 at 237.125 kb on + strand, within MPMX19_06960 at 237.125 kb on + strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.126 kb on - strand, within MPMX19_06960 at 237.129 kb on - strand, within MPMX19_06960 at 237.176 kb on + strand, within MPMX19_06960 at 237.176 kb on + strand, within MPMX19_06960 at 237.176 kb on + strand, within MPMX19_06960 at 237.177 kb on - strand, within MPMX19_06960 at 237.177 kb on - strand, within MPMX19_06960 at 237.177 kb on - strand, within MPMX19_06960
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 234,216 + MPMX19_06958 0.34 -0.3 234,216 + MPMX19_06958 0.34 -1.3 234,216 + MPMX19_06958 0.34 -0.6 234,216 + MPMX19_06958 0.34 +0.5 234,216 + MPMX19_06958 0.34 -1.5 234,216 + MPMX19_06958 0.34 -1.8 234,217 - MPMX19_06958 0.34 -0.2 234,217 - MPMX19_06958 0.34 +0.3 234,217 - MPMX19_06958 0.34 -0.0 234,217 - MPMX19_06958 0.34 +1.3 234,217 - MPMX19_06958 0.34 +0.9 234,217 - MPMX19_06958 0.34 -1.5 234,217 - MPMX19_06958 0.34 -0.0 234,217 - MPMX19_06958 0.34 +0.5 234,468 + MPMX19_06958 0.57 -1.5 234,468 + MPMX19_06958 0.57 -1.4 234,469 - MPMX19_06958 0.57 -0.2 234,469 - MPMX19_06958 0.57 -1.2 234,826 - +0.6 235,031 + -0.7 235,031 + -1.1 235,031 + +0.5 235,032 - -0.7 235,032 - -0.5 235,032 - -0.9 235,032 - +0.9 235,032 - -1.0 235,033 + -0.8 235,033 + -1.2 235,033 + -0.4 235,033 + -0.4 235,033 + -0.0 235,033 + +0.4 235,033 + -1.3 235,033 + -1.4 235,033 + -1.2 235,033 + -1.4 235,034 - -1.0 235,034 - -0.7 235,034 - -1.9 235,034 - +0.1 235,034 - +0.3 235,034 - -0.9 235,034 - -0.3 235,034 - +0.5 235,034 - -0.7 235,034 - -1.5 235,034 - +2.5 235,037 + -1.6 235,037 + -1.4 235,037 + +0.7 235,037 + -0.4 235,037 + -0.7 235,037 + -0.2 235,037 + -0.7 235,037 + +0.7 235,037 + +0.5 235,038 - -1.0 235,049 + +0.8 235,049 + +0.3 235,049 + -0.2 235,050 - +0.4 235,059 + -0.9 235,059 + -0.5 235,097 + -1.2 235,097 + +1.0 235,097 + -1.1 235,097 + -0.9 235,097 + +1.7 235,097 + -0.3 235,097 + +0.4 235,097 + -0.1 235,097 + -1.4 235,098 - -0.8 235,098 - +2.6 235,098 - -0.7 235,178 + -0.5 235,178 + -1.9 235,178 + -0.8 235,178 + -0.7 235,178 + -1.0 235,178 + +0.1 235,178 + -0.1 235,178 + -1.2 235,178 + -0.7 235,178 + -2.0 235,178 + +0.1 235,179 - +1.1 235,179 - +1.1 235,179 - -1.3 235,179 - -0.9 235,179 - -0.0 235,179 - -0.1 235,179 - +0.5 235,181 + +0.5 235,181 + -0.0 235,181 + +0.1 235,182 - +0.1 235,182 - -1.5 235,182 - +1.8 235,229 + MPMX19_06959 0.11 -0.3 235,229 + MPMX19_06959 0.11 +0.9 235,229 + MPMX19_06959 0.11 -1.3 235,229 + MPMX19_06959 0.11 -1.0 235,230 - MPMX19_06959 0.11 -0.9 235,382 + MPMX19_06959 0.23 -0.9 235,383 - MPMX19_06959 0.23 -1.8 235,383 - MPMX19_06959 0.23 +0.2 235,397 + MPMX19_06959 0.24 -0.3 235,397 + MPMX19_06959 0.24 -0.9 235,398 - MPMX19_06959 0.25 +0.1 235,472 + MPMX19_06959 0.31 +0.2 235,472 + MPMX19_06959 0.31 +1.1 235,472 + MPMX19_06959 0.31 -0.3 235,473 - MPMX19_06959 0.31 -1.7 235,473 - MPMX19_06959 0.31 -0.4 235,473 - MPMX19_06959 0.31 -1.2 235,473 - MPMX19_06959 0.31 -1.7 235,787 + MPMX19_06959 0.56 -1.0 235,788 - MPMX19_06959 0.56 -0.1 235,788 - MPMX19_06959 0.56 +0.8 235,788 - MPMX19_06959 0.56 +0.0 235,806 - MPMX19_06959 0.58 -0.4 235,806 - MPMX19_06959 0.58 +0.3 235,806 - MPMX19_06959 0.58 -0.1 235,806 - MPMX19_06959 0.58 -0.8 235,806 - MPMX19_06959 0.58 -1.6 235,862 + MPMX19_06959 0.62 -1.6 235,862 + MPMX19_06959 0.62 +0.2 235,862 + MPMX19_06959 0.62 -0.0 235,863 - MPMX19_06959 0.62 -1.1 235,863 - MPMX19_06959 0.62 -0.9 235,871 + MPMX19_06959 0.63 +0.1 235,871 + MPMX19_06959 0.63 -1.2 235,871 + MPMX19_06959 0.63 +0.2 235,871 + MPMX19_06959 0.63 -2.2 235,871 + MPMX19_06959 0.63 +0.5 235,872 - MPMX19_06959 0.63 -1.2 235,872 - MPMX19_06959 0.63 -1.4 236,036 + MPMX19_06959 0.76 -0.2 236,036 + MPMX19_06959 0.76 -1.2 236,037 - MPMX19_06959 0.77 +0.1 236,237 + -0.4 236,237 + -0.3 236,338 - +0.0 236,343 + -0.9 236,344 - -1.5 236,365 + -0.4 236,365 + -0.1 236,365 + +0.1 236,366 - +0.5 236,366 - -0.2 236,366 - -2.2 236,366 - +0.2 236,366 - -0.7 236,458 - -1.7 236,459 + -1.6 236,459 + -0.9 236,459 + +0.1 236,459 + -0.2 236,459 + -0.9 236,460 - +0.3 236,460 - -1.2 236,460 - +0.5 236,460 - -0.7 236,460 - -1.8 236,460 - +0.0 236,471 + +2.1 236,498 + -1.1 236,498 + -1.2 236,499 - +0.1 236,726 + MPMX19_06960 0.24 -0.5 236,727 - MPMX19_06960 0.24 -0.9 236,727 - MPMX19_06960 0.24 +0.5 236,876 + MPMX19_06960 0.34 +0.0 236,876 + MPMX19_06960 0.34 -0.2 236,876 + MPMX19_06960 0.34 -1.7 236,876 + MPMX19_06960 0.34 -1.3 236,876 + MPMX19_06960 0.34 +0.8 236,876 + MPMX19_06960 0.34 -0.1 236,877 - MPMX19_06960 0.34 -0.3 236,877 - MPMX19_06960 0.34 +0.3 236,877 - MPMX19_06960 0.34 -0.2 236,877 - MPMX19_06960 0.34 +0.8 236,877 - MPMX19_06960 0.34 +0.8 236,877 - MPMX19_06960 0.34 -0.7 236,877 - MPMX19_06960 0.34 -0.4 236,924 + MPMX19_06960 0.37 -0.8 236,924 + MPMX19_06960 0.37 -0.1 236,924 + MPMX19_06960 0.37 +1.2 236,924 + MPMX19_06960 0.37 -1.0 236,924 + MPMX19_06960 0.37 +1.9 236,924 + MPMX19_06960 0.37 -0.4 236,924 + MPMX19_06960 0.37 -0.3 236,925 - MPMX19_06960 0.37 -0.0 236,925 - MPMX19_06960 0.37 -1.0 236,925 - MPMX19_06960 0.37 -0.0 236,925 - MPMX19_06960 0.37 -0.6 236,925 - MPMX19_06960 0.37 +0.4 236,925 - MPMX19_06960 0.37 +0.8 236,925 - MPMX19_06960 0.37 -1.8 236,925 - MPMX19_06960 0.37 +0.9 236,925 - MPMX19_06960 0.37 +0.8 236,925 - MPMX19_06960 0.37 -1.5 236,925 - MPMX19_06960 0.37 -0.5 236,925 - MPMX19_06960 0.37 +0.5 236,994 - MPMX19_06960 0.42 -2.5 237,056 + MPMX19_06960 0.46 -0.6 237,056 + MPMX19_06960 0.46 -0.4 237,056 + MPMX19_06960 0.46 -1.8 237,056 + MPMX19_06960 0.46 -1.4 237,056 + MPMX19_06960 0.46 -0.2 237,056 + MPMX19_06960 0.46 -0.2 237,056 + MPMX19_06960 0.46 +0.4 237,056 + MPMX19_06960 0.46 +0.3 237,056 + MPMX19_06960 0.46 -0.2 237,056 + MPMX19_06960 0.46 -0.6 237,056 + MPMX19_06960 0.46 +0.1 237,056 + MPMX19_06960 0.46 -0.5 237,057 - MPMX19_06960 0.46 +0.9 237,057 - MPMX19_06960 0.46 -1.2 237,057 - MPMX19_06960 0.46 +0.3 237,057 - MPMX19_06960 0.46 -0.9 237,057 - MPMX19_06960 0.46 +0.8 237,057 - MPMX19_06960 0.46 +1.1 237,057 - MPMX19_06960 0.46 +0.8 237,057 - MPMX19_06960 0.46 -0.9 237,057 - MPMX19_06960 0.46 -1.9 237,057 - MPMX19_06960 0.46 -0.9 237,125 + MPMX19_06960 0.51 -1.0 237,125 + MPMX19_06960 0.51 -0.6 237,126 - MPMX19_06960 0.51 -0.7 237,126 - MPMX19_06960 0.51 -0.5 237,126 - MPMX19_06960 0.51 -0.4 237,126 - MPMX19_06960 0.51 -1.4 237,126 - MPMX19_06960 0.51 -0.1 237,126 - MPMX19_06960 0.51 +0.2 237,126 - MPMX19_06960 0.51 -0.1 237,126 - MPMX19_06960 0.51 -0.5 237,126 - MPMX19_06960 0.51 -0.3 237,126 - MPMX19_06960 0.51 -0.6 237,129 - MPMX19_06960 0.51 -2.1 237,176 + MPMX19_06960 0.54 -0.4 237,176 + MPMX19_06960 0.54 -0.2 237,176 + MPMX19_06960 0.54 -0.5 237,177 - MPMX19_06960 0.54 -0.9 237,177 - MPMX19_06960 0.54 +0.5 237,177 - MPMX19_06960 0.54 +0.3
Or see this region's nucleotide sequence