Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06948

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06946 and MPMX19_06947 overlap by 1 nucleotidesMPMX19_06947 and MPMX19_06948 overlap by 4 nucleotidesMPMX19_06948 and MPMX19_06949 overlap by 4 nucleotides MPMX19_06946: MPMX19_06946 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 221,667 to 222,515 _06946 MPMX19_06947: MPMX19_06947 - hypothetical protein, at 222,515 to 222,898 _06947 MPMX19_06948: MPMX19_06948 - Peptidyl-lysine N-acetyltransferase Pat, at 222,895 to 225,072 _06948 MPMX19_06949: MPMX19_06949 - Acryloyl-CoA reductase (NADH), at 225,069 to 226,232 _06949 Position (kb) 222 223 224 225 226Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 221.911 kb on + strand, within MPMX19_06946at 221.911 kb on + strand, within MPMX19_06946at 221.911 kb on + strand, within MPMX19_06946at 221.912 kb on - strand, within MPMX19_06946at 221.912 kb on - strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.918 kb on - strand, within MPMX19_06946at 221.918 kb on - strand, within MPMX19_06946at 221.918 kb on - strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.077 kb on - strand, within MPMX19_06946at 222.077 kb on - strand, within MPMX19_06946at 222.079 kb on + strand, within MPMX19_06946at 222.080 kb on - strand, within MPMX19_06946at 222.080 kb on - strand, within MPMX19_06946at 222.080 kb on - strand, within MPMX19_06946at 222.162 kb on - strand, within MPMX19_06946at 222.162 kb on - strand, within MPMX19_06946at 222.241 kb on + strand, within MPMX19_06946at 222.241 kb on + strand, within MPMX19_06946at 222.242 kb on - strand, within MPMX19_06946at 222.263 kb on - strand, within MPMX19_06946at 222.263 kb on - strand, within MPMX19_06946at 222.263 kb on - strand, within MPMX19_06946at 222.408 kb on + strand, within MPMX19_06946at 222.408 kb on + strand, within MPMX19_06946at 222.409 kb on - strand, within MPMX19_06946at 222.409 kb on - strand, within MPMX19_06946at 222.442 kb on + strandat 222.442 kb on + strandat 222.443 kb on - strandat 222.466 kb on + strandat 222.466 kb on + strandat 222.467 kb on - strandat 222.481 kb on + strandat 222.481 kb on + strandat 222.481 kb on + strandat 222.482 kb on - strandat 222.482 kb on - strandat 222.482 kb on - strandat 222.564 kb on + strand, within MPMX19_06947at 222.564 kb on + strand, within MPMX19_06947at 222.564 kb on + strand, within MPMX19_06947at 222.564 kb on + strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.780 kb on + strand, within MPMX19_06947at 222.781 kb on - strand, within MPMX19_06947at 223.223 kb on + strand, within MPMX19_06948at 223.224 kb on - strand, within MPMX19_06948at 223.224 kb on - strand, within MPMX19_06948at 223.496 kb on + strand, within MPMX19_06948at 223.497 kb on - strand, within MPMX19_06948at 223.583 kb on + strand, within MPMX19_06948at 223.583 kb on + strand, within MPMX19_06948at 223.583 kb on + strand, within MPMX19_06948at 223.946 kb on + strand, within MPMX19_06948at 223.946 kb on + strand, within MPMX19_06948at 223.946 kb on + strand, within MPMX19_06948at 223.947 kb on - strand, within MPMX19_06948at 223.947 kb on - strand, within MPMX19_06948at 224.309 kb on + strand, within MPMX19_06948at 224.309 kb on + strand, within MPMX19_06948at 224.310 kb on - strand, within MPMX19_06948at 224.310 kb on - strand, within MPMX19_06948at 224.310 kb on - strand, within MPMX19_06948at 224.310 kb on - strand, within MPMX19_06948at 224.400 kb on - strand, within MPMX19_06948at 224.672 kb on + strand, within MPMX19_06948at 224.673 kb on - strand, within MPMX19_06948at 224.788 kb on + strand, within MPMX19_06948at 224.788 kb on + strand, within MPMX19_06948at 224.912 kb on + strandat 224.912 kb on + strandat 224.913 kb on - strandat 224.913 kb on - strandat 224.928 kb on - strandat 225.197 kb on - strand, within MPMX19_06949at 225.197 kb on - strand, within MPMX19_06949at 225.197 kb on - strand, within MPMX19_06949at 225.218 kb on + strand, within MPMX19_06949at 225.218 kb on + strand, within MPMX19_06949at 225.218 kb on + strand, within MPMX19_06949at 225.219 kb on - strand, within MPMX19_06949at 225.220 kb on + strand, within MPMX19_06949at 225.220 kb on + strand, within MPMX19_06949at 225.220 kb on + strand, within MPMX19_06949at 225.221 kb on - strand, within MPMX19_06949at 225.221 kb on - strand, within MPMX19_06949at 225.221 kb on - strand, within MPMX19_06949at 225.307 kb on + strand, within MPMX19_06949at 225.308 kb on - strand, within MPMX19_06949at 225.308 kb on - strand, within MPMX19_06949at 225.350 kb on - strand, within MPMX19_06949at 225.585 kb on - strand, within MPMX19_06949at 225.585 kb on - strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.608 kb on - strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.932 kb on - strand, within MPMX19_06949

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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221,911 + MPMX19_06946 0.29 +0.9
221,911 + MPMX19_06946 0.29 -2.0
221,911 + MPMX19_06946 0.29 -0.7
221,912 - MPMX19_06946 0.29 -1.2
221,912 - MPMX19_06946 0.29 +0.0
221,917 + MPMX19_06946 0.29 -1.3
221,917 + MPMX19_06946 0.29 +0.2
221,917 + MPMX19_06946 0.29 +2.7
221,917 + MPMX19_06946 0.29 +1.9
221,918 - MPMX19_06946 0.30 -0.2
221,918 - MPMX19_06946 0.30 +0.3
221,918 - MPMX19_06946 0.30 -2.2
221,956 + MPMX19_06946 0.34 -1.1
221,956 + MPMX19_06946 0.34 -0.1
221,956 + MPMX19_06946 0.34 -0.1
221,956 + MPMX19_06946 0.34 -1.4
221,956 + MPMX19_06946 0.34 -0.7
221,956 + MPMX19_06946 0.34 -0.1
221,957 - MPMX19_06946 0.34 +0.5
221,957 - MPMX19_06946 0.34 -0.3
221,957 - MPMX19_06946 0.34 -0.7
221,957 - MPMX19_06946 0.34 -0.4
221,957 - MPMX19_06946 0.34 -0.6
221,957 - MPMX19_06946 0.34 +0.1
221,957 - MPMX19_06946 0.34 -1.9
221,957 - MPMX19_06946 0.34 -0.4
221,957 - MPMX19_06946 0.34 -0.8
222,076 + MPMX19_06946 0.48 -0.2
222,076 + MPMX19_06946 0.48 -1.8
222,076 + MPMX19_06946 0.48 +0.1
222,076 + MPMX19_06946 0.48 -1.1
222,077 - MPMX19_06946 0.48 -0.7
222,077 - MPMX19_06946 0.48 -0.3
222,079 + MPMX19_06946 0.49 +0.2
222,080 - MPMX19_06946 0.49 +2.1
222,080 - MPMX19_06946 0.49 -0.2
222,080 - MPMX19_06946 0.49 -1.5
222,162 - MPMX19_06946 0.58 -0.5
222,162 - MPMX19_06946 0.58 +0.5
222,241 + MPMX19_06946 0.68 +1.8
222,241 + MPMX19_06946 0.68 +0.9
222,242 - MPMX19_06946 0.68 -0.1
222,263 - MPMX19_06946 0.70 -0.1
222,263 - MPMX19_06946 0.70 +0.3
222,263 - MPMX19_06946 0.70 -0.8
222,408 + MPMX19_06946 0.87 -0.1
222,408 + MPMX19_06946 0.87 -2.1
222,409 - MPMX19_06946 0.87 +0.1
222,409 - MPMX19_06946 0.87 +1.3
222,442 + -0.1
222,442 + -1.4
222,443 - -0.4
222,466 + -0.4
222,466 + -0.2
222,467 - -1.0
222,481 + -0.7
222,481 + +0.5
222,481 + -0.1
222,482 - -0.4
222,482 - +0.3
222,482 - -0.7
222,564 + MPMX19_06947 0.13 +0.1
222,564 + MPMX19_06947 0.13 -0.5
222,564 + MPMX19_06947 0.13 -0.4
222,564 + MPMX19_06947 0.13 -1.1
222,565 - MPMX19_06947 0.13 +1.1
222,565 - MPMX19_06947 0.13 +0.9
222,565 - MPMX19_06947 0.13 -0.0
222,565 - MPMX19_06947 0.13 +0.2
222,565 - MPMX19_06947 0.13 +0.7
222,565 - MPMX19_06947 0.13 -0.2
222,565 - MPMX19_06947 0.13 -1.5
222,780 + MPMX19_06947 0.69 +0.8
222,781 - MPMX19_06947 0.69 -0.6
223,223 + MPMX19_06948 0.15 -0.0
223,224 - MPMX19_06948 0.15 -1.0
223,224 - MPMX19_06948 0.15 -0.7
223,496 + MPMX19_06948 0.28 -0.7
223,497 - MPMX19_06948 0.28 +1.5
223,583 + MPMX19_06948 0.32 -1.2
223,583 + MPMX19_06948 0.32 +1.5
223,583 + MPMX19_06948 0.32 -0.4
223,946 + MPMX19_06948 0.48 -0.0
223,946 + MPMX19_06948 0.48 -1.5
223,946 + MPMX19_06948 0.48 +1.2
223,947 - MPMX19_06948 0.48 +1.1
223,947 - MPMX19_06948 0.48 +0.9
224,309 + MPMX19_06948 0.65 -0.7
224,309 + MPMX19_06948 0.65 +0.1
224,310 - MPMX19_06948 0.65 +0.3
224,310 - MPMX19_06948 0.65 -0.9
224,310 - MPMX19_06948 0.65 -1.8
224,310 - MPMX19_06948 0.65 -0.2
224,400 - MPMX19_06948 0.69 +0.1
224,672 + MPMX19_06948 0.82 +0.3
224,673 - MPMX19_06948 0.82 -0.9
224,788 + MPMX19_06948 0.87 -0.8
224,788 + MPMX19_06948 0.87 -0.8
224,912 + -1.0
224,912 + -0.2
224,913 - +1.1
224,913 - -1.2
224,928 - -0.5
225,197 - MPMX19_06949 0.11 -2.4
225,197 - MPMX19_06949 0.11 -1.8
225,197 - MPMX19_06949 0.11 +0.5
225,218 + MPMX19_06949 0.13 +0.1
225,218 + MPMX19_06949 0.13 -0.3
225,218 + MPMX19_06949 0.13 -0.7
225,219 - MPMX19_06949 0.13 -0.6
225,220 + MPMX19_06949 0.13 +0.8
225,220 + MPMX19_06949 0.13 -1.2
225,220 + MPMX19_06949 0.13 -0.9
225,221 - MPMX19_06949 0.13 -0.1
225,221 - MPMX19_06949 0.13 -2.5
225,221 - MPMX19_06949 0.13 -1.6
225,307 + MPMX19_06949 0.20 -0.2
225,308 - MPMX19_06949 0.21 -0.1
225,308 - MPMX19_06949 0.21 +0.8
225,350 - MPMX19_06949 0.24 +2.1
225,585 - MPMX19_06949 0.44 +0.9
225,585 - MPMX19_06949 0.44 -0.6
225,607 + MPMX19_06949 0.46 -0.2
225,607 + MPMX19_06949 0.46 +0.5
225,607 + MPMX19_06949 0.46 -2.4
225,607 + MPMX19_06949 0.46 -0.1
225,608 - MPMX19_06949 0.46 +0.8
225,727 + MPMX19_06949 0.57 -2.1
225,727 + MPMX19_06949 0.57 +0.9
225,727 + MPMX19_06949 0.57 -0.3
225,727 + MPMX19_06949 0.57 -3.0
225,727 + MPMX19_06949 0.57 -1.3
225,727 + MPMX19_06949 0.57 -1.4
225,727 + MPMX19_06949 0.57 +0.2
225,727 + MPMX19_06949 0.57 -0.8
225,727 + MPMX19_06949 0.57 -1.6
225,727 + MPMX19_06949 0.57 -0.9
225,727 + MPMX19_06949 0.57 +0.2
225,727 + MPMX19_06949 0.57 -1.8
225,727 + MPMX19_06949 0.57 -0.7
225,728 - MPMX19_06949 0.57 -1.0
225,728 - MPMX19_06949 0.57 -0.1
225,728 - MPMX19_06949 0.57 -0.5
225,728 - MPMX19_06949 0.57 -0.5
225,728 - MPMX19_06949 0.57 +0.3
225,728 - MPMX19_06949 0.57 -0.4
225,728 - MPMX19_06949 0.57 -0.1
225,728 - MPMX19_06949 0.57 -0.5
225,728 - MPMX19_06949 0.57 -0.5
225,728 - MPMX19_06949 0.57 -1.6
225,790 + MPMX19_06949 0.62 +0.9
225,790 + MPMX19_06949 0.62 +0.7
225,790 + MPMX19_06949 0.62 +3.1
225,790 + MPMX19_06949 0.62 -0.9
225,790 + MPMX19_06949 0.62 +0.5
225,790 + MPMX19_06949 0.62 +0.8
225,790 + MPMX19_06949 0.62 -0.5
225,791 - MPMX19_06949 0.62 -0.7
225,791 - MPMX19_06949 0.62 +0.1
225,791 - MPMX19_06949 0.62 -1.1
225,791 - MPMX19_06949 0.62 +0.2
225,791 - MPMX19_06949 0.62 -1.2
225,791 - MPMX19_06949 0.62 -0.1
225,791 - MPMX19_06949 0.62 -2.6
225,932 - MPMX19_06949 0.74 -0.9

Or see this region's nucleotide sequence