Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06943

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06942 and MPMX19_06943 are separated by 86 nucleotidesMPMX19_06943 and MPMX19_06944 are separated by 31 nucleotides MPMX19_06942: MPMX19_06942 - Long-chain-fatty-acid--CoA ligase, at 215,100 to 216,626 _06942 MPMX19_06943: MPMX19_06943 - Alpha-ketoglutaric semialdehyde dehydrogenase 1, at 216,713 to 218,158 _06943 MPMX19_06944: MPMX19_06944 - Fatty acid oxidation complex subunit alpha, at 218,190 to 220,301 _06944 Position (kb) 216 217 218 219Strain fitness (log2 ratio) -2 -1 0 1at 215.814 kb on + strand, within MPMX19_06942at 215.814 kb on + strand, within MPMX19_06942at 215.814 kb on + strand, within MPMX19_06942at 215.814 kb on + strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.961 kb on + strand, within MPMX19_06942at 215.962 kb on - strand, within MPMX19_06942at 216.591 kb on - strandat 216.915 kb on + strand, within MPMX19_06943at 216.915 kb on + strand, within MPMX19_06943at 216.915 kb on + strand, within MPMX19_06943at 216.915 kb on + strand, within MPMX19_06943at 216.915 kb on + strand, within MPMX19_06943at 216.915 kb on + strand, within MPMX19_06943at 216.915 kb on + strand, within MPMX19_06943at 216.916 kb on - strand, within MPMX19_06943at 216.916 kb on - strand, within MPMX19_06943at 216.916 kb on - strand, within MPMX19_06943at 216.916 kb on - strand, within MPMX19_06943at 216.916 kb on - strand, within MPMX19_06943at 217.062 kb on + strand, within MPMX19_06943at 217.063 kb on - strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.278 kb on + strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.279 kb on - strand, within MPMX19_06943at 217.785 kb on + strand, within MPMX19_06943at 217.786 kb on - strand, within MPMX19_06943at 217.786 kb on - strand, within MPMX19_06943at 217.786 kb on - strand, within MPMX19_06943at 217.786 kb on - strand, within MPMX19_06943at 217.786 kb on - strand, within MPMX19_06943at 217.786 kb on - strand, within MPMX19_06943at 218.171 kb on - strandat 218.171 kb on - strandat 218.171 kb on - strandat 218.171 kb on - strandat 218.554 kb on + strand, within MPMX19_06944at 218.554 kb on + strand, within MPMX19_06944at 218.555 kb on - strand, within MPMX19_06944at 218.555 kb on - strand, within MPMX19_06944at 218.555 kb on - strand, within MPMX19_06944at 218.555 kb on - strand, within MPMX19_06944at 218.557 kb on + strand, within MPMX19_06944at 218.621 kb on - strand, within MPMX19_06944at 218.806 kb on + strand, within MPMX19_06944at 218.806 kb on + strand, within MPMX19_06944at 218.806 kb on + strand, within MPMX19_06944at 218.806 kb on + strand, within MPMX19_06944at 218.806 kb on + strand, within MPMX19_06944at 218.806 kb on + strand, within MPMX19_06944at 218.806 kb on + strand, within MPMX19_06944at 218.807 kb on - strand, within MPMX19_06944at 218.807 kb on - strand, within MPMX19_06944at 218.807 kb on - strand, within MPMX19_06944at 218.807 kb on - strand, within MPMX19_06944at 219.025 kb on + strand, within MPMX19_06944at 219.025 kb on + strand, within MPMX19_06944at 219.025 kb on + strand, within MPMX19_06944at 219.026 kb on - strand, within MPMX19_06944at 219.026 kb on - strand, within MPMX19_06944at 219.026 kb on - strand, within MPMX19_06944at 219.026 kb on - strand, within MPMX19_06944at 219.026 kb on - strand, within MPMX19_06944

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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215,814 + MPMX19_06942 0.47 -0.7
215,814 + MPMX19_06942 0.47 -1.0
215,814 + MPMX19_06942 0.47 +0.3
215,814 + MPMX19_06942 0.47 -0.2
215,815 - MPMX19_06942 0.47 -0.4
215,815 - MPMX19_06942 0.47 -0.7
215,815 - MPMX19_06942 0.47 -1.7
215,815 - MPMX19_06942 0.47 -1.7
215,815 - MPMX19_06942 0.47 -0.6
215,961 + MPMX19_06942 0.56 -0.4
215,962 - MPMX19_06942 0.56 -1.2
216,591 - -0.5
216,915 + MPMX19_06943 0.14 -0.3
216,915 + MPMX19_06943 0.14 -0.6
216,915 + MPMX19_06943 0.14 -0.7
216,915 + MPMX19_06943 0.14 -0.4
216,915 + MPMX19_06943 0.14 -1.9
216,915 + MPMX19_06943 0.14 -0.5
216,915 + MPMX19_06943 0.14 -1.1
216,916 - MPMX19_06943 0.14 -1.2
216,916 - MPMX19_06943 0.14 -1.1
216,916 - MPMX19_06943 0.14 -0.8
216,916 - MPMX19_06943 0.14 -1.1
216,916 - MPMX19_06943 0.14 -1.4
217,062 + MPMX19_06943 0.24 +0.1
217,063 - MPMX19_06943 0.24 -1.5
217,278 + MPMX19_06943 0.39 -0.5
217,278 + MPMX19_06943 0.39 -0.7
217,278 + MPMX19_06943 0.39 +0.4
217,278 + MPMX19_06943 0.39 -0.7
217,278 + MPMX19_06943 0.39 -0.4
217,278 + MPMX19_06943 0.39 -0.4
217,278 + MPMX19_06943 0.39 -1.2
217,278 + MPMX19_06943 0.39 -0.6
217,278 + MPMX19_06943 0.39 +0.1
217,278 + MPMX19_06943 0.39 -1.1
217,278 + MPMX19_06943 0.39 -1.8
217,278 + MPMX19_06943 0.39 -1.4
217,278 + MPMX19_06943 0.39 -1.9
217,278 + MPMX19_06943 0.39 -1.1
217,278 + MPMX19_06943 0.39 -1.2
217,278 + MPMX19_06943 0.39 -0.8
217,279 - MPMX19_06943 0.39 +0.1
217,279 - MPMX19_06943 0.39 -1.2
217,279 - MPMX19_06943 0.39 +0.3
217,279 - MPMX19_06943 0.39 -0.9
217,279 - MPMX19_06943 0.39 +1.1
217,279 - MPMX19_06943 0.39 -0.6
217,279 - MPMX19_06943 0.39 -0.8
217,279 - MPMX19_06943 0.39 +0.8
217,279 - MPMX19_06943 0.39 -1.1
217,279 - MPMX19_06943 0.39 -2.5
217,279 - MPMX19_06943 0.39 -1.2
217,279 - MPMX19_06943 0.39 +1.1
217,279 - MPMX19_06943 0.39 -0.3
217,785 + MPMX19_06943 0.74 -0.3
217,786 - MPMX19_06943 0.74 +0.7
217,786 - MPMX19_06943 0.74 +0.1
217,786 - MPMX19_06943 0.74 +1.1
217,786 - MPMX19_06943 0.74 +0.5
217,786 - MPMX19_06943 0.74 +0.9
217,786 - MPMX19_06943 0.74 -0.4
218,171 - -1.3
218,171 - -0.1
218,171 - -0.9
218,171 - +0.6
218,554 + MPMX19_06944 0.17 +0.4
218,554 + MPMX19_06944 0.17 -1.9
218,555 - MPMX19_06944 0.17 +0.3
218,555 - MPMX19_06944 0.17 -0.7
218,555 - MPMX19_06944 0.17 +0.8
218,555 - MPMX19_06944 0.17 +0.8
218,557 + MPMX19_06944 0.17 -0.1
218,621 - MPMX19_06944 0.20 -0.2
218,806 + MPMX19_06944 0.29 -0.9
218,806 + MPMX19_06944 0.29 -0.6
218,806 + MPMX19_06944 0.29 +1.1
218,806 + MPMX19_06944 0.29 -0.6
218,806 + MPMX19_06944 0.29 +1.3
218,806 + MPMX19_06944 0.29 -1.7
218,806 + MPMX19_06944 0.29 -0.7
218,807 - MPMX19_06944 0.29 +0.0
218,807 - MPMX19_06944 0.29 -0.2
218,807 - MPMX19_06944 0.29 +0.8
218,807 - MPMX19_06944 0.29 -1.7
219,025 + MPMX19_06944 0.40 -1.2
219,025 + MPMX19_06944 0.40 +0.3
219,025 + MPMX19_06944 0.40 -0.8
219,026 - MPMX19_06944 0.40 -1.9
219,026 - MPMX19_06944 0.40 -0.0
219,026 - MPMX19_06944 0.40 -1.6
219,026 - MPMX19_06944 0.40 -0.0
219,026 - MPMX19_06944 0.40 -0.7

Or see this region's nucleotide sequence