Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06926 and MPMX19_06927 are separated by 26 nucleotides MPMX19_06927 and MPMX19_06928 are separated by 42 nucleotides MPMX19_06928 and MPMX19_06929 are separated by 308 nucleotides MPMX19_06929 and MPMX19_06930 are separated by 316 nucleotides
MPMX19_06926: MPMX19_06926 - hypothetical protein, at 201,714 to 202,046
_06926
MPMX19_06927: MPMX19_06927 - FMN-dependent NADH-azoreductase 1, at 202,073 to 202,705
_06927
MPMX19_06928: MPMX19_06928 - hypothetical protein, at 202,748 to 203,020
_06928
MPMX19_06929: MPMX19_06929 - hypothetical protein, at 203,329 to 203,646
_06929
MPMX19_06930: MPMX19_06930 - Sensor kinase CckA, at 203,963 to 204,331
_06930
Position (kb) 202
203
204 Strain fitness (log2 ratio) -2
-1
0
1 at 201.899 kb on + strand, within MPMX19_06926 at 201.899 kb on + strand, within MPMX19_06926 at 201.900 kb on - strand, within MPMX19_06926 at 201.900 kb on - strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 202.021 kb on + strand at 202.021 kb on + strand at 202.021 kb on + strand at 202.022 kb on - strand at 202.022 kb on - strand at 202.075 kb on - strand at 202.075 kb on - strand at 202.075 kb on - strand at 202.218 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.272 kb on + strand, within MPMX19_06927 at 202.272 kb on + strand, within MPMX19_06927 at 202.273 kb on - strand, within MPMX19_06927 at 202.273 kb on - strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.345 kb on - strand, within MPMX19_06927 at 202.345 kb on - strand, within MPMX19_06927 at 202.404 kb on - strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927 at 202.855 kb on + strand, within MPMX19_06928 at 202.856 kb on - strand, within MPMX19_06928 at 202.918 kb on - strand, within MPMX19_06928 at 202.918 kb on - strand, within MPMX19_06928 at 202.918 kb on - strand, within MPMX19_06928 at 203.221 kb on + strand at 203.221 kb on + strand at 203.378 kb on + strand, within MPMX19_06929 at 203.435 kb on + strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.775 kb on + strand at 203.776 kb on - strand at 203.810 kb on + strand at 203.811 kb on - strand at 203.826 kb on + strand at 203.843 kb on - strand at 203.862 kb on + strand at 203.863 kb on - strand at 203.863 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 201,899 + MPMX19_06926 0.56 -0.5 201,899 + MPMX19_06926 0.56 -1.1 201,900 - MPMX19_06926 0.56 -2.4 201,900 - MPMX19_06926 0.56 -0.4 201,958 + MPMX19_06926 0.73 +1.1 201,958 + MPMX19_06926 0.73 +0.5 201,958 + MPMX19_06926 0.73 -1.5 201,959 - MPMX19_06926 0.74 -0.2 201,959 - MPMX19_06926 0.74 +0.8 201,959 - MPMX19_06926 0.74 -1.0 201,959 - MPMX19_06926 0.74 -0.6 201,959 - MPMX19_06926 0.74 -1.8 202,021 + +0.1 202,021 + -1.6 202,021 + -1.8 202,022 - -2.0 202,022 - -1.5 202,075 - +0.1 202,075 - -0.4 202,075 - -1.5 202,218 + MPMX19_06927 0.23 -0.7 202,230 + MPMX19_06927 0.25 -0.3 202,230 + MPMX19_06927 0.25 -1.6 202,230 + MPMX19_06927 0.25 +0.1 202,231 - MPMX19_06927 0.25 -0.7 202,231 - MPMX19_06927 0.25 -1.1 202,231 - MPMX19_06927 0.25 -0.1 202,272 + MPMX19_06927 0.31 -0.3 202,272 + MPMX19_06927 0.31 -0.5 202,273 - MPMX19_06927 0.32 -1.2 202,273 - MPMX19_06927 0.32 -0.4 202,344 + MPMX19_06927 0.43 +0.8 202,344 + MPMX19_06927 0.43 -0.8 202,344 + MPMX19_06927 0.43 -1.6 202,344 + MPMX19_06927 0.43 -0.4 202,345 - MPMX19_06927 0.43 -0.2 202,345 - MPMX19_06927 0.43 -1.5 202,404 - MPMX19_06927 0.52 -0.9 202,416 + MPMX19_06927 0.54 -1.4 202,416 + MPMX19_06927 0.54 -0.4 202,416 + MPMX19_06927 0.54 -1.2 202,416 + MPMX19_06927 0.54 -0.9 202,416 + MPMX19_06927 0.54 -0.8 202,417 - MPMX19_06927 0.54 -0.1 202,417 - MPMX19_06927 0.54 +0.3 202,417 - MPMX19_06927 0.54 -0.5 202,855 + MPMX19_06928 0.39 -0.8 202,856 - MPMX19_06928 0.40 -1.1 202,918 - MPMX19_06928 0.62 -1.6 202,918 - MPMX19_06928 0.62 -0.9 202,918 - MPMX19_06928 0.62 -0.2 203,221 + -0.9 203,221 + -0.9 203,378 + MPMX19_06929 0.15 -0.6 203,435 + MPMX19_06929 0.33 +0.7 203,436 - MPMX19_06929 0.34 -0.4 203,436 - MPMX19_06929 0.34 +1.1 203,436 - MPMX19_06929 0.34 -1.9 203,436 - MPMX19_06929 0.34 -0.5 203,436 - MPMX19_06929 0.34 +0.9 203,775 + -0.9 203,776 - -0.0 203,810 + +0.1 203,811 - -0.3 203,826 + -0.9 203,843 - +1.6 203,862 + -0.8 203,863 - +0.3 203,863 - -0.7
Or see this region's nucleotide sequence