Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06910 and MPMX19_06911 overlap by 4 nucleotides MPMX19_06911 and MPMX19_06912 are separated by 1 nucleotides MPMX19_06912 and MPMX19_06913 are separated by 103 nucleotides
MPMX19_06910: MPMX19_06910 - hypothetical protein, at 185,838 to 186,872
_06910
MPMX19_06911: MPMX19_06911 - Lipopolysaccharide export system ATP-binding protein LptB, at 186,869 to 187,624
_06911
MPMX19_06912: MPMX19_06912 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 187,626 to 188,369
_06912
MPMX19_06913: MPMX19_06913 - D-galactarolactone cycloisomerase, at 188,473 to 189,573
_06913
Position (kb) 187
188
189 Strain fitness (log2 ratio) -2
-1
0
1
2 at 186.684 kb on + strand, within MPMX19_06910 at 186.685 kb on - strand, within MPMX19_06910 at 187.023 kb on - strand, within MPMX19_06911 at 187.023 kb on - strand, within MPMX19_06911 at 187.025 kb on + strand, within MPMX19_06911 at 187.025 kb on + strand, within MPMX19_06911 at 187.025 kb on + strand, within MPMX19_06911 at 187.025 kb on + strand, within MPMX19_06911 at 187.025 kb on + strand, within MPMX19_06911 at 187.025 kb on + strand, within MPMX19_06911 at 187.026 kb on - strand, within MPMX19_06911 at 187.026 kb on - strand, within MPMX19_06911 at 187.026 kb on - strand, within MPMX19_06911 at 187.026 kb on - strand, within MPMX19_06911 at 187.026 kb on - strand, within MPMX19_06911 at 187.026 kb on - strand, within MPMX19_06911 at 187.295 kb on + strand, within MPMX19_06911 at 187.296 kb on - strand, within MPMX19_06911 at 187.296 kb on - strand, within MPMX19_06911 at 187.498 kb on + strand, within MPMX19_06911 at 187.498 kb on + strand, within MPMX19_06911 at 187.499 kb on - strand, within MPMX19_06911 at 187.610 kb on + strand at 187.610 kb on + strand at 187.610 kb on + strand at 187.610 kb on + strand at 187.610 kb on + strand at 187.610 kb on + strand at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 188.010 kb on + strand, within MPMX19_06912 at 188.010 kb on + strand, within MPMX19_06912 at 188.010 kb on + strand, within MPMX19_06912 at 188.010 kb on + strand, within MPMX19_06912 at 188.010 kb on + strand, within MPMX19_06912 at 188.011 kb on - strand, within MPMX19_06912 at 188.011 kb on - strand, within MPMX19_06912 at 188.011 kb on - strand, within MPMX19_06912 at 188.011 kb on - strand, within MPMX19_06912 at 188.011 kb on - strand, within MPMX19_06912 at 188.011 kb on - strand, within MPMX19_06912 at 188.265 kb on + strand, within MPMX19_06912 at 188.265 kb on + strand, within MPMX19_06912 at 188.265 kb on + strand, within MPMX19_06912 at 188.266 kb on - strand, within MPMX19_06912 at 188.271 kb on + strand, within MPMX19_06912 at 188.271 kb on + strand, within MPMX19_06912 at 188.271 kb on + strand, within MPMX19_06912 at 188.271 kb on + strand, within MPMX19_06912 at 188.271 kb on + strand, within MPMX19_06912 at 188.271 kb on + strand, within MPMX19_06912 at 188.272 kb on - strand, within MPMX19_06912 at 188.272 kb on - strand, within MPMX19_06912 at 188.272 kb on - strand, within MPMX19_06912 at 188.349 kb on + strand at 188.350 kb on - strand at 188.350 kb on - strand at 188.572 kb on + strand at 188.572 kb on + strand at 188.572 kb on + strand at 188.572 kb on + strand at 188.573 kb on - strand at 188.573 kb on - strand at 188.573 kb on - strand at 188.573 kb on - strand at 188.632 kb on + strand, within MPMX19_06913 at 188.632 kb on + strand, within MPMX19_06913 at 188.632 kb on + strand, within MPMX19_06913 at 188.632 kb on + strand, within MPMX19_06913 at 188.633 kb on - strand, within MPMX19_06913 at 188.776 kb on + strand, within MPMX19_06913 at 188.777 kb on - strand, within MPMX19_06913 at 188.777 kb on - strand, within MPMX19_06913 at 188.777 kb on - strand, within MPMX19_06913 at 188.777 kb on - strand, within MPMX19_06913 at 188.884 kb on + strand, within MPMX19_06913 at 188.884 kb on + strand, within MPMX19_06913 at 188.884 kb on + strand, within MPMX19_06913 at 188.884 kb on + strand, within MPMX19_06913 at 188.884 kb on + strand, within MPMX19_06913 at 188.884 kb on + strand, within MPMX19_06913 at 188.885 kb on - strand, within MPMX19_06913 at 188.885 kb on - strand, within MPMX19_06913 at 188.885 kb on - strand, within MPMX19_06913 at 189.189 kb on + strand, within MPMX19_06913 at 189.190 kb on - strand, within MPMX19_06913 at 189.259 kb on + strand, within MPMX19_06913 at 189.260 kb on - strand, within MPMX19_06913 at 189.260 kb on - strand, within MPMX19_06913 at 189.260 kb on - strand, within MPMX19_06913 at 189.260 kb on - strand, within MPMX19_06913 at 189.260 kb on - strand, within MPMX19_06913 at 189.260 kb on - strand, within MPMX19_06913 at 189.260 kb on - strand, within MPMX19_06913 at 189.361 kb on + strand, within MPMX19_06913 at 189.362 kb on + strand, within MPMX19_06913
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 186,684 + MPMX19_06910 0.82 -1.7 186,685 - MPMX19_06910 0.82 -0.5 187,023 - MPMX19_06911 0.20 -1.5 187,023 - MPMX19_06911 0.20 -1.9 187,025 + MPMX19_06911 0.21 -1.7 187,025 + MPMX19_06911 0.21 -1.0 187,025 + MPMX19_06911 0.21 -0.5 187,025 + MPMX19_06911 0.21 +0.3 187,025 + MPMX19_06911 0.21 +1.2 187,025 + MPMX19_06911 0.21 -0.4 187,026 - MPMX19_06911 0.21 -0.0 187,026 - MPMX19_06911 0.21 -0.5 187,026 - MPMX19_06911 0.21 +1.1 187,026 - MPMX19_06911 0.21 +0.3 187,026 - MPMX19_06911 0.21 -0.9 187,026 - MPMX19_06911 0.21 +2.1 187,295 + MPMX19_06911 0.56 -0.6 187,296 - MPMX19_06911 0.56 +1.5 187,296 - MPMX19_06911 0.56 -1.0 187,498 + MPMX19_06911 0.83 -1.3 187,498 + MPMX19_06911 0.83 -0.7 187,499 - MPMX19_06911 0.83 -0.5 187,610 + -0.7 187,610 + +1.2 187,610 + +0.1 187,610 + -0.6 187,610 + +1.2 187,610 + -1.2 187,965 + MPMX19_06912 0.46 +1.2 187,965 + MPMX19_06912 0.46 +0.5 187,965 + MPMX19_06912 0.46 +0.9 187,965 + MPMX19_06912 0.46 -0.7 187,965 + MPMX19_06912 0.46 +0.4 187,965 + MPMX19_06912 0.46 +0.2 187,965 + MPMX19_06912 0.46 -1.1 187,965 + MPMX19_06912 0.46 -0.9 187,965 + MPMX19_06912 0.46 -0.2 187,965 + MPMX19_06912 0.46 -1.4 187,965 + MPMX19_06912 0.46 +0.5 187,966 - MPMX19_06912 0.46 -0.9 187,966 - MPMX19_06912 0.46 +0.2 187,966 - MPMX19_06912 0.46 +0.3 187,966 - MPMX19_06912 0.46 -0.7 187,966 - MPMX19_06912 0.46 -0.2 187,966 - MPMX19_06912 0.46 -0.1 187,966 - MPMX19_06912 0.46 -0.7 187,966 - MPMX19_06912 0.46 -1.4 188,010 + MPMX19_06912 0.52 +1.3 188,010 + MPMX19_06912 0.52 +0.5 188,010 + MPMX19_06912 0.52 +0.1 188,010 + MPMX19_06912 0.52 +0.3 188,010 + MPMX19_06912 0.52 -1.1 188,011 - MPMX19_06912 0.52 +0.3 188,011 - MPMX19_06912 0.52 +2.1 188,011 - MPMX19_06912 0.52 +0.0 188,011 - MPMX19_06912 0.52 -0.3 188,011 - MPMX19_06912 0.52 -0.2 188,011 - MPMX19_06912 0.52 +0.5 188,265 + MPMX19_06912 0.86 -1.4 188,265 + MPMX19_06912 0.86 -1.5 188,265 + MPMX19_06912 0.86 -1.8 188,266 - MPMX19_06912 0.86 +1.3 188,271 + MPMX19_06912 0.87 +1.1 188,271 + MPMX19_06912 0.87 -0.9 188,271 + MPMX19_06912 0.87 +1.9 188,271 + MPMX19_06912 0.87 -0.5 188,271 + MPMX19_06912 0.87 -1.1 188,271 + MPMX19_06912 0.87 +0.3 188,272 - MPMX19_06912 0.87 -0.2 188,272 - MPMX19_06912 0.87 -0.5 188,272 - MPMX19_06912 0.87 -1.0 188,349 + +0.9 188,350 - +1.2 188,350 - +1.1 188,572 + +0.9 188,572 + +0.8 188,572 + -0.5 188,572 + -0.6 188,573 - -0.2 188,573 - -1.1 188,573 - -0.5 188,573 - +0.5 188,632 + MPMX19_06913 0.14 +1.1 188,632 + MPMX19_06913 0.14 -1.1 188,632 + MPMX19_06913 0.14 +0.7 188,632 + MPMX19_06913 0.14 -0.7 188,633 - MPMX19_06913 0.15 -0.0 188,776 + MPMX19_06913 0.28 -1.2 188,777 - MPMX19_06913 0.28 -0.4 188,777 - MPMX19_06913 0.28 +1.1 188,777 - MPMX19_06913 0.28 +0.3 188,777 - MPMX19_06913 0.28 +0.1 188,884 + MPMX19_06913 0.37 -1.6 188,884 + MPMX19_06913 0.37 -1.2 188,884 + MPMX19_06913 0.37 -1.1 188,884 + MPMX19_06913 0.37 -2.1 188,884 + MPMX19_06913 0.37 -0.0 188,884 + MPMX19_06913 0.37 -0.8 188,885 - MPMX19_06913 0.37 -0.9 188,885 - MPMX19_06913 0.37 +0.8 188,885 - MPMX19_06913 0.37 +0.5 189,189 + MPMX19_06913 0.65 +1.0 189,190 - MPMX19_06913 0.65 -0.0 189,259 + MPMX19_06913 0.71 -2.0 189,260 - MPMX19_06913 0.71 -0.6 189,260 - MPMX19_06913 0.71 -0.8 189,260 - MPMX19_06913 0.71 -0.7 189,260 - MPMX19_06913 0.71 -0.2 189,260 - MPMX19_06913 0.71 -0.2 189,260 - MPMX19_06913 0.71 -0.7 189,260 - MPMX19_06913 0.71 -0.2 189,361 + MPMX19_06913 0.81 -1.3 189,362 + MPMX19_06913 0.81 -0.9
Or see this region's nucleotide sequence