Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06896

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06894 and MPMX19_06895 are separated by 36 nucleotidesMPMX19_06895 and MPMX19_06896 overlap by 4 nucleotidesMPMX19_06896 and MPMX19_06897 are separated by 203 nucleotidesMPMX19_06897 and MPMX19_06898 are separated by 43 nucleotides MPMX19_06894: MPMX19_06894 - hypothetical protein, at 168,592 to 169,626 _06894 MPMX19_06895: MPMX19_06895 - hypothetical protein, at 169,663 to 170,010 _06895 MPMX19_06896: MPMX19_06896 - L-aspartate oxidase, at 170,007 to 171,695 _06896 MPMX19_06897: MPMX19_06897 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 171,899 to 172,384 _06897 MPMX19_06898: MPMX19_06898 - FAD-dependent urate hydroxylase, at 172,428 to 173,885 _06898 Position (kb) 170 171 172Strain fitness (log2 ratio) -2 -1 0 1at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.403 kb on + strand, within MPMX19_06894at 169.404 kb on - strand, within MPMX19_06894at 169.842 kb on - strand, within MPMX19_06895at 170.362 kb on + strand, within MPMX19_06896at 170.906 kb on - strand, within MPMX19_06896at 170.906 kb on - strand, within MPMX19_06896at 170.906 kb on - strand, within MPMX19_06896at 170.909 kb on - strand, within MPMX19_06896at 170.909 kb on - strand, within MPMX19_06896at 170.909 kb on - strand, within MPMX19_06896at 170.909 kb on - strand, within MPMX19_06896at 171.512 kb on - strand, within MPMX19_06896at 171.512 kb on - strand, within MPMX19_06896at 171.872 kb on + strandat 171.905 kb on - strandat 171.971 kb on + strand, within MPMX19_06897at 171.971 kb on + strand, within MPMX19_06897at 171.971 kb on + strand, within MPMX19_06897at 171.971 kb on + strand, within MPMX19_06897at 172.008 kb on - strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.358 kb on + strandat 172.359 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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169,013 + MPMX19_06894 0.41 +0.2
169,013 + MPMX19_06894 0.41 -0.8
169,013 + MPMX19_06894 0.41 -0.1
169,013 + MPMX19_06894 0.41 +0.4
169,013 + MPMX19_06894 0.41 -0.3
169,013 + MPMX19_06894 0.41 -0.6
169,013 + MPMX19_06894 0.41 -0.5
169,014 - MPMX19_06894 0.41 +0.3
169,014 - MPMX19_06894 0.41 -0.5
169,014 - MPMX19_06894 0.41 -1.7
169,014 - MPMX19_06894 0.41 +0.8
169,014 - MPMX19_06894 0.41 -0.5
169,014 - MPMX19_06894 0.41 -1.5
169,014 - MPMX19_06894 0.41 -1.3
169,146 - MPMX19_06894 0.54 -0.9
169,146 - MPMX19_06894 0.54 -0.1
169,146 - MPMX19_06894 0.54 -0.1
169,146 - MPMX19_06894 0.54 +0.8
169,146 - MPMX19_06894 0.54 +0.5
169,146 - MPMX19_06894 0.54 +1.0
169,403 + MPMX19_06894 0.78 +0.1
169,404 - MPMX19_06894 0.78 -1.6
169,842 - MPMX19_06895 0.51 -0.3
170,362 + MPMX19_06896 0.21 +0.3
170,906 - MPMX19_06896 0.53 -0.5
170,906 - MPMX19_06896 0.53 -1.1
170,906 - MPMX19_06896 0.53 +0.2
170,909 - MPMX19_06896 0.53 -1.4
170,909 - MPMX19_06896 0.53 -0.2
170,909 - MPMX19_06896 0.53 +1.3
170,909 - MPMX19_06896 0.53 +1.4
171,512 - MPMX19_06896 0.89 -1.4
171,512 - MPMX19_06896 0.89 -0.7
171,872 + -0.4
171,905 - -1.6
171,971 + MPMX19_06897 0.15 -0.6
171,971 + MPMX19_06897 0.15 +0.2
171,971 + MPMX19_06897 0.15 +0.5
171,971 + MPMX19_06897 0.15 -0.0
172,008 - MPMX19_06897 0.22 -0.9
172,280 + MPMX19_06897 0.78 -1.4
172,280 + MPMX19_06897 0.78 -0.0
172,280 + MPMX19_06897 0.78 -0.9
172,280 + MPMX19_06897 0.78 -2.7
172,280 + MPMX19_06897 0.78 -0.2
172,358 + -0.3
172,359 - +0.1

Or see this region's nucleotide sequence