Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06881

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06880 and MPMX19_06881 are separated by 56 nucleotidesMPMX19_06881 and MPMX19_06882 are separated by 260 nucleotides MPMX19_06880: MPMX19_06880 - Validamycin A dioxygenase, at 151,371 to 152,417 _06880 MPMX19_06881: MPMX19_06881 - O-acetyl-L-homoserine sulfhydrylase, at 152,474 to 153,769 _06881 MPMX19_06882: MPMX19_06882 - hypothetical protein, at 154,030 to 155,691 _06882 Position (kb) 152 153 154Strain fitness (log2 ratio) -2 -1 0 1 2at 151.636 kb on - strand, within MPMX19_06880at 151.636 kb on - strand, within MPMX19_06880at 151.636 kb on - strand, within MPMX19_06880at 151.636 kb on - strand, within MPMX19_06880at 152.319 kb on + strandat 152.319 kb on + strandat 152.319 kb on + strandat 152.319 kb on + strandat 152.319 kb on + strandat 152.320 kb on - strandat 152.320 kb on - strandat 152.320 kb on - strandat 152.320 kb on - strandat 152.320 kb on - strandat 152.320 kb on - strandat 152.388 kb on + strandat 152.389 kb on - strandat 152.389 kb on - strandat 152.485 kb on + strandat 152.486 kb on - strandat 152.486 kb on - strandat 152.486 kb on - strandat 152.486 kb on - strandat 152.641 kb on + strand, within MPMX19_06881at 152.641 kb on + strand, within MPMX19_06881at 152.641 kb on + strand, within MPMX19_06881at 152.641 kb on + strand, within MPMX19_06881at 152.641 kb on + strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.642 kb on - strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.645 kb on + strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.646 kb on - strand, within MPMX19_06881at 152.930 kb on + strand, within MPMX19_06881at 152.930 kb on + strand, within MPMX19_06881at 152.931 kb on - strand, within MPMX19_06881at 152.931 kb on - strand, within MPMX19_06881at 152.933 kb on + strand, within MPMX19_06881at 152.933 kb on + strand, within MPMX19_06881at 152.933 kb on + strand, within MPMX19_06881at 152.934 kb on - strand, within MPMX19_06881at 152.934 kb on - strand, within MPMX19_06881at 152.934 kb on - strand, within MPMX19_06881at 152.934 kb on - strand, within MPMX19_06881at 152.934 kb on - strand, within MPMX19_06881at 152.934 kb on - strand, within MPMX19_06881at 152.934 kb on - strand, within MPMX19_06881at 153.101 kb on + strand, within MPMX19_06881at 153.101 kb on + strand, within MPMX19_06881at 153.101 kb on + strand, within MPMX19_06881at 153.101 kb on + strand, within MPMX19_06881at 153.101 kb on + strand, within MPMX19_06881at 153.212 kb on + strand, within MPMX19_06881at 153.212 kb on + strand, within MPMX19_06881at 153.212 kb on + strand, within MPMX19_06881at 153.263 kb on + strand, within MPMX19_06881at 153.263 kb on + strand, within MPMX19_06881at 153.263 kb on + strand, within MPMX19_06881at 153.264 kb on - strand, within MPMX19_06881at 153.264 kb on - strand, within MPMX19_06881at 153.407 kb on + strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.489 kb on - strand, within MPMX19_06881at 153.582 kb on - strand, within MPMX19_06881at 153.582 kb on - strand, within MPMX19_06881at 153.582 kb on - strand, within MPMX19_06881at 153.582 kb on - strand, within MPMX19_06881at 153.582 kb on - strand, within MPMX19_06881at 153.582 kb on - strand, within MPMX19_06881at 153.693 kb on - strandat 153.693 kb on - strandat 153.767 kb on + strandat 153.767 kb on + strandat 153.767 kb on + strandat 153.767 kb on + strandat 153.768 kb on - strandat 153.768 kb on - strandat 153.768 kb on - strandat 153.768 kb on - strandat 153.891 kb on + strandat 153.892 kb on - strandat 153.892 kb on - strandat 154.101 kb on - strandat 154.231 kb on + strand, within MPMX19_06882at 154.231 kb on + strand, within MPMX19_06882at 154.231 kb on + strand, within MPMX19_06882at 154.231 kb on + strand, within MPMX19_06882at 154.231 kb on + strand, within MPMX19_06882at 154.232 kb on - strand, within MPMX19_06882at 154.232 kb on - strand, within MPMX19_06882at 154.232 kb on - strand, within MPMX19_06882at 154.232 kb on - strand, within MPMX19_06882at 154.232 kb on - strand, within MPMX19_06882at 154.232 kb on - strand, within MPMX19_06882at 154.232 kb on - strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.434 kb on + strand, within MPMX19_06882at 154.435 kb on - strand, within MPMX19_06882at 154.435 kb on - strand, within MPMX19_06882at 154.435 kb on - strand, within MPMX19_06882

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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151,636 - MPMX19_06880 0.25 -1.2
151,636 - MPMX19_06880 0.25 +0.2
151,636 - MPMX19_06880 0.25 -0.5
151,636 - MPMX19_06880 0.25 -0.5
152,319 + -0.1
152,319 + -0.2
152,319 + -0.4
152,319 + +2.1
152,319 + -0.4
152,320 - -0.6
152,320 - -0.9
152,320 - -2.4
152,320 - +0.1
152,320 - -0.8
152,320 - -0.6
152,388 + -1.2
152,389 - +1.1
152,389 - -1.4
152,485 + -0.2
152,486 - -0.2
152,486 - +1.7
152,486 - -0.9
152,486 - -0.5
152,641 + MPMX19_06881 0.13 +0.4
152,641 + MPMX19_06881 0.13 -0.5
152,641 + MPMX19_06881 0.13 -0.8
152,641 + MPMX19_06881 0.13 -0.9
152,641 + MPMX19_06881 0.13 -0.6
152,642 - MPMX19_06881 0.13 +1.7
152,642 - MPMX19_06881 0.13 -0.5
152,642 - MPMX19_06881 0.13 -0.1
152,642 - MPMX19_06881 0.13 +0.3
152,642 - MPMX19_06881 0.13 -1.3
152,642 - MPMX19_06881 0.13 +0.3
152,642 - MPMX19_06881 0.13 -1.1
152,642 - MPMX19_06881 0.13 -0.1
152,645 + MPMX19_06881 0.13 -1.4
152,645 + MPMX19_06881 0.13 -0.9
152,645 + MPMX19_06881 0.13 +0.1
152,645 + MPMX19_06881 0.13 -2.3
152,645 + MPMX19_06881 0.13 -0.8
152,645 + MPMX19_06881 0.13 +0.2
152,645 + MPMX19_06881 0.13 -1.5
152,645 + MPMX19_06881 0.13 -1.2
152,645 + MPMX19_06881 0.13 +0.6
152,645 + MPMX19_06881 0.13 -0.2
152,646 - MPMX19_06881 0.13 +1.3
152,646 - MPMX19_06881 0.13 +0.3
152,646 - MPMX19_06881 0.13 -1.1
152,646 - MPMX19_06881 0.13 -0.7
152,646 - MPMX19_06881 0.13 +0.1
152,646 - MPMX19_06881 0.13 +0.8
152,646 - MPMX19_06881 0.13 -1.0
152,646 - MPMX19_06881 0.13 -0.4
152,646 - MPMX19_06881 0.13 -0.6
152,646 - MPMX19_06881 0.13 -0.9
152,646 - MPMX19_06881 0.13 +0.5
152,930 + MPMX19_06881 0.35 -1.9
152,930 + MPMX19_06881 0.35 -0.5
152,931 - MPMX19_06881 0.35 -0.9
152,931 - MPMX19_06881 0.35 -0.5
152,933 + MPMX19_06881 0.35 -1.6
152,933 + MPMX19_06881 0.35 -1.4
152,933 + MPMX19_06881 0.35 -0.5
152,934 - MPMX19_06881 0.35 -0.2
152,934 - MPMX19_06881 0.35 -0.7
152,934 - MPMX19_06881 0.35 +0.3
152,934 - MPMX19_06881 0.35 -0.9
152,934 - MPMX19_06881 0.35 -0.6
152,934 - MPMX19_06881 0.35 -1.9
152,934 - MPMX19_06881 0.35 +0.7
153,101 + MPMX19_06881 0.48 -0.4
153,101 + MPMX19_06881 0.48 -0.1
153,101 + MPMX19_06881 0.48 -1.2
153,101 + MPMX19_06881 0.48 -1.9
153,101 + MPMX19_06881 0.48 +0.2
153,212 + MPMX19_06881 0.57 +0.2
153,212 + MPMX19_06881 0.57 -1.7
153,212 + MPMX19_06881 0.57 -0.1
153,263 + MPMX19_06881 0.61 -1.7
153,263 + MPMX19_06881 0.61 -0.7
153,263 + MPMX19_06881 0.61 -0.1
153,264 - MPMX19_06881 0.61 -1.2
153,264 - MPMX19_06881 0.61 +0.9
153,407 + MPMX19_06881 0.72 +0.1
153,489 - MPMX19_06881 0.78 -1.3
153,489 - MPMX19_06881 0.78 -1.0
153,489 - MPMX19_06881 0.78 -1.4
153,489 - MPMX19_06881 0.78 +1.1
153,489 - MPMX19_06881 0.78 +1.1
153,489 - MPMX19_06881 0.78 -0.6
153,489 - MPMX19_06881 0.78 -1.2
153,489 - MPMX19_06881 0.78 +0.5
153,582 - MPMX19_06881 0.85 -1.1
153,582 - MPMX19_06881 0.85 -0.6
153,582 - MPMX19_06881 0.85 -1.3
153,582 - MPMX19_06881 0.85 -1.0
153,582 - MPMX19_06881 0.85 +0.3
153,582 - MPMX19_06881 0.85 -0.7
153,693 - -1.1
153,693 - +0.1
153,767 + -1.3
153,767 + -1.1
153,767 + +0.3
153,767 + -0.1
153,768 - +1.1
153,768 - +1.1
153,768 - +0.1
153,768 - -1.1
153,891 + -0.5
153,892 - -1.1
153,892 - -0.1
154,101 - -1.2
154,231 + MPMX19_06882 0.12 -1.1
154,231 + MPMX19_06882 0.12 -0.5
154,231 + MPMX19_06882 0.12 -0.4
154,231 + MPMX19_06882 0.12 +2.1
154,231 + MPMX19_06882 0.12 +0.3
154,232 - MPMX19_06882 0.12 +2.1
154,232 - MPMX19_06882 0.12 -2.4
154,232 - MPMX19_06882 0.12 +0.1
154,232 - MPMX19_06882 0.12 -2.4
154,232 - MPMX19_06882 0.12 +0.3
154,232 - MPMX19_06882 0.12 -0.6
154,232 - MPMX19_06882 0.12 -0.7
154,434 + MPMX19_06882 0.24 +0.6
154,434 + MPMX19_06882 0.24 -1.4
154,434 + MPMX19_06882 0.24 -1.9
154,434 + MPMX19_06882 0.24 +0.2
154,434 + MPMX19_06882 0.24 +0.4
154,434 + MPMX19_06882 0.24 +0.5
154,434 + MPMX19_06882 0.24 -1.3
154,434 + MPMX19_06882 0.24 +0.1
154,434 + MPMX19_06882 0.24 -0.4
154,434 + MPMX19_06882 0.24 +0.1
154,435 - MPMX19_06882 0.24 -1.8
154,435 - MPMX19_06882 0.24 -1.6
154,435 - MPMX19_06882 0.24 +0.5

Or see this region's nucleotide sequence