Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06867 and MPMX19_06868 are separated by 111 nucleotides MPMX19_06868 and MPMX19_06869 are separated by 247 nucleotides MPMX19_06869 and MPMX19_06870 are separated by 82 nucleotides
MPMX19_06867: MPMX19_06867 - Sialic acid transporter NanT, at 136,331 to 137,689
_06867
MPMX19_06868: MPMX19_06868 - hypothetical protein, at 137,801 to 139,618
_06868
MPMX19_06869: MPMX19_06869 - NADH:FAD oxidoreductase, at 139,866 to 140,396
_06869
MPMX19_06870: MPMX19_06870 - Riboflavin biosynthesis protein RibBA, at 140,479 to 141,606
_06870
Position (kb) 137
138
139
140 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 136.944 kb on + strand, within MPMX19_06867 at 136.944 kb on + strand, within MPMX19_06867 at 136.944 kb on + strand, within MPMX19_06867 at 136.945 kb on - strand, within MPMX19_06867 at 136.977 kb on + strand, within MPMX19_06867 at 136.978 kb on + strand, within MPMX19_06867 at 136.978 kb on + strand, within MPMX19_06867 at 136.979 kb on - strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.989 kb on + strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 136.990 kb on - strand, within MPMX19_06867 at 137.262 kb on + strand, within MPMX19_06867 at 137.466 kb on + strand, within MPMX19_06867 at 137.467 kb on - strand, within MPMX19_06867 at 137.467 kb on - strand, within MPMX19_06867 at 137.467 kb on - strand, within MPMX19_06867 at 137.586 kb on + strand at 137.586 kb on + strand at 137.586 kb on + strand at 137.586 kb on + strand at 137.586 kb on + strand at 137.586 kb on + strand at 137.586 kb on + strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.587 kb on - strand at 137.613 kb on + strand at 137.614 kb on - strand at 137.689 kb on + strand at 137.689 kb on + strand at 137.784 kb on + strand at 137.784 kb on + strand at 137.785 kb on - strand at 137.785 kb on - strand at 137.785 kb on - strand at 137.856 kb on + strand at 137.880 kb on + strand at 137.880 kb on + strand at 137.881 kb on - strand at 137.881 kb on - strand at 137.881 kb on - strand at 137.881 kb on - strand at 137.898 kb on + strand at 137.898 kb on + strand at 137.898 kb on + strand at 137.898 kb on + strand at 137.898 kb on + strand at 137.898 kb on + strand at 137.899 kb on - strand at 137.899 kb on - strand at 137.899 kb on - strand at 137.899 kb on - strand at 137.899 kb on - strand at 137.899 kb on - strand at 137.899 kb on - strand at 137.899 kb on - strand at 137.967 kb on + strand at 137.968 kb on - strand at 137.968 kb on - strand at 137.968 kb on - strand at 137.968 kb on - strand at 138.039 kb on + strand, within MPMX19_06868 at 138.063 kb on + strand, within MPMX19_06868 at 138.174 kb on + strand, within MPMX19_06868 at 138.174 kb on + strand, within MPMX19_06868 at 138.175 kb on - strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.210 kb on + strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.211 kb on - strand, within MPMX19_06868 at 138.430 kb on + strand, within MPMX19_06868 at 138.431 kb on - strand, within MPMX19_06868 at 138.431 kb on - strand, within MPMX19_06868 at 138.431 kb on - strand, within MPMX19_06868 at 138.516 kb on + strand, within MPMX19_06868 at 138.517 kb on - strand, within MPMX19_06868 at 138.517 kb on - strand, within MPMX19_06868 at 138.604 kb on - strand, within MPMX19_06868 at 138.669 kb on + strand, within MPMX19_06868 at 138.670 kb on - strand, within MPMX19_06868 at 138.670 kb on - strand, within MPMX19_06868 at 138.670 kb on - strand, within MPMX19_06868 at 138.807 kb on + strand, within MPMX19_06868 at 138.870 kb on + strand, within MPMX19_06868 at 138.871 kb on - strand, within MPMX19_06868 at 139.101 kb on + strand, within MPMX19_06868 at 139.102 kb on - strand, within MPMX19_06868 at 139.102 kb on - strand, within MPMX19_06868 at 139.102 kb on - strand, within MPMX19_06868 at 139.102 kb on - strand, within MPMX19_06868 at 139.102 kb on - strand, within MPMX19_06868 at 139.102 kb on - strand, within MPMX19_06868 at 139.176 kb on + strand, within MPMX19_06868 at 139.176 kb on + strand, within MPMX19_06868 at 139.177 kb on - strand, within MPMX19_06868 at 139.230 kb on + strand, within MPMX19_06868 at 139.230 kb on + strand, within MPMX19_06868 at 139.231 kb on - strand, within MPMX19_06868 at 139.332 kb on + strand, within MPMX19_06868 at 139.332 kb on + strand, within MPMX19_06868 at 139.332 kb on + strand, within MPMX19_06868 at 139.332 kb on + strand, within MPMX19_06868 at 139.332 kb on + strand, within MPMX19_06868 at 139.332 kb on + strand, within MPMX19_06868 at 139.333 kb on - strand, within MPMX19_06868 at 139.333 kb on - strand, within MPMX19_06868 at 139.562 kb on + strand at 139.562 kb on + strand at 139.607 kb on + strand at 139.607 kb on + strand at 139.608 kb on - strand at 139.608 kb on - strand at 139.608 kb on - strand at 139.608 kb on - strand at 139.845 kb on + strand at 139.845 kb on + strand at 139.846 kb on - strand at 139.846 kb on - strand at 139.867 kb on + strand at 139.868 kb on - strand at 139.868 kb on - strand at 139.976 kb on + strand, within MPMX19_06869 at 140.379 kb on + strand at 140.379 kb on + strand at 140.380 kb on - strand at 140.380 kb on - strand at 140.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 136,944 + MPMX19_06867 0.45 +0.3 136,944 + MPMX19_06867 0.45 -0.1 136,944 + MPMX19_06867 0.45 -0.6 136,945 - MPMX19_06867 0.45 -0.1 136,977 + MPMX19_06867 0.48 +1.1 136,978 + MPMX19_06867 0.48 -0.4 136,978 + MPMX19_06867 0.48 +1.1 136,979 - MPMX19_06867 0.48 -0.2 136,989 + MPMX19_06867 0.48 +1.7 136,989 + MPMX19_06867 0.48 -1.5 136,989 + MPMX19_06867 0.48 +0.1 136,989 + MPMX19_06867 0.48 -0.9 136,989 + MPMX19_06867 0.48 +1.1 136,989 + MPMX19_06867 0.48 -1.7 136,989 + MPMX19_06867 0.48 -0.9 136,989 + MPMX19_06867 0.48 +1.8 136,989 + MPMX19_06867 0.48 +0.3 136,989 + MPMX19_06867 0.48 +1.2 136,989 + MPMX19_06867 0.48 -1.7 136,990 - MPMX19_06867 0.48 -0.7 136,990 - MPMX19_06867 0.48 -0.5 136,990 - MPMX19_06867 0.48 -0.3 136,990 - MPMX19_06867 0.48 -0.1 136,990 - MPMX19_06867 0.48 -1.6 136,990 - MPMX19_06867 0.48 -0.2 136,990 - MPMX19_06867 0.48 +0.1 136,990 - MPMX19_06867 0.48 -1.6 136,990 - MPMX19_06867 0.48 -1.9 137,262 + MPMX19_06867 0.69 +0.5 137,466 + MPMX19_06867 0.84 -0.1 137,467 - MPMX19_06867 0.84 -1.7 137,467 - MPMX19_06867 0.84 -0.1 137,467 - MPMX19_06867 0.84 +0.3 137,586 + +0.8 137,586 + -0.5 137,586 + -0.7 137,586 + -1.1 137,586 + -1.1 137,586 + -1.4 137,586 + +0.2 137,587 - -0.7 137,587 - +1.2 137,587 - +0.5 137,587 - +0.3 137,587 - -0.6 137,587 - +0.7 137,587 - +0.7 137,587 - -1.5 137,587 - +0.2 137,587 - +0.6 137,587 - -0.2 137,613 + -1.7 137,614 - -0.1 137,689 + +0.3 137,689 + -0.2 137,784 + +0.7 137,784 + +0.3 137,785 - +0.2 137,785 - -1.4 137,785 - -0.6 137,856 + -0.2 137,880 + +0.9 137,880 + -0.6 137,881 - -2.8 137,881 - +0.7 137,881 - +0.5 137,881 - -0.1 137,898 + +1.8 137,898 + -0.5 137,898 + -0.5 137,898 + +0.1 137,898 + -0.5 137,898 + -1.7 137,899 - -1.8 137,899 - -0.5 137,899 - +0.5 137,899 - +2.1 137,899 - +0.8 137,899 - -0.7 137,899 - -1.4 137,899 - +0.5 137,967 + -0.5 137,968 - -0.2 137,968 - -0.4 137,968 - -1.0 137,968 - +1.5 138,039 + MPMX19_06868 0.13 +0.6 138,063 + MPMX19_06868 0.14 -0.6 138,174 + MPMX19_06868 0.21 -1.2 138,174 + MPMX19_06868 0.21 -1.4 138,175 - MPMX19_06868 0.21 +0.2 138,210 + MPMX19_06868 0.22 -0.7 138,210 + MPMX19_06868 0.22 +0.3 138,210 + MPMX19_06868 0.22 +0.5 138,210 + MPMX19_06868 0.22 -3.2 138,210 + MPMX19_06868 0.22 -0.9 138,210 + MPMX19_06868 0.22 +0.1 138,210 + MPMX19_06868 0.22 -1.9 138,210 + MPMX19_06868 0.22 +0.1 138,211 - MPMX19_06868 0.23 +2.1 138,211 - MPMX19_06868 0.23 +0.8 138,211 - MPMX19_06868 0.23 +1.8 138,211 - MPMX19_06868 0.23 -0.9 138,211 - MPMX19_06868 0.23 -0.3 138,211 - MPMX19_06868 0.23 -0.2 138,211 - MPMX19_06868 0.23 -1.1 138,211 - MPMX19_06868 0.23 -1.3 138,430 + MPMX19_06868 0.35 -0.9 138,431 - MPMX19_06868 0.35 -1.1 138,431 - MPMX19_06868 0.35 +1.6 138,431 - MPMX19_06868 0.35 -1.3 138,516 + MPMX19_06868 0.39 +1.3 138,517 - MPMX19_06868 0.39 -0.9 138,517 - MPMX19_06868 0.39 -1.2 138,604 - MPMX19_06868 0.44 +0.1 138,669 + MPMX19_06868 0.48 -1.2 138,670 - MPMX19_06868 0.48 -0.7 138,670 - MPMX19_06868 0.48 +0.3 138,670 - MPMX19_06868 0.48 -1.4 138,807 + MPMX19_06868 0.55 -0.2 138,870 + MPMX19_06868 0.59 -0.0 138,871 - MPMX19_06868 0.59 -0.0 139,101 + MPMX19_06868 0.72 +1.5 139,102 - MPMX19_06868 0.72 -1.2 139,102 - MPMX19_06868 0.72 -0.5 139,102 - MPMX19_06868 0.72 -0.2 139,102 - MPMX19_06868 0.72 -3.0 139,102 - MPMX19_06868 0.72 +0.7 139,102 - MPMX19_06868 0.72 -0.9 139,176 + MPMX19_06868 0.76 -0.9 139,176 + MPMX19_06868 0.76 -1.1 139,177 - MPMX19_06868 0.76 -0.9 139,230 + MPMX19_06868 0.79 -0.0 139,230 + MPMX19_06868 0.79 -0.7 139,231 - MPMX19_06868 0.79 +0.5 139,332 + MPMX19_06868 0.84 -0.8 139,332 + MPMX19_06868 0.84 +0.7 139,332 + MPMX19_06868 0.84 -0.3 139,332 + MPMX19_06868 0.84 -0.2 139,332 + MPMX19_06868 0.84 +0.3 139,332 + MPMX19_06868 0.84 +0.1 139,333 - MPMX19_06868 0.84 +0.2 139,333 - MPMX19_06868 0.84 +0.4 139,562 + +0.5 139,562 + -0.7 139,607 + -0.5 139,607 + -0.4 139,608 - +0.2 139,608 - -0.9 139,608 - -0.3 139,608 - +0.3 139,845 + +0.1 139,845 + +1.1 139,846 - -1.2 139,846 - -1.2 139,867 + +0.5 139,868 - +1.7 139,868 - +0.4 139,976 + MPMX19_06869 0.21 +0.5 140,379 + +0.0 140,379 + +0.1 140,380 - +0.8 140,380 - -0.7 140,532 - -1.6
Or see this region's nucleotide sequence