Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06867

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06866 and MPMX19_06867 are separated by 121 nucleotidesMPMX19_06867 and MPMX19_06868 are separated by 111 nucleotides MPMX19_06866: MPMX19_06866 - HTH-type transcriptional regulator NimR, at 135,331 to 136,209 _06866 MPMX19_06867: MPMX19_06867 - Sialic acid transporter NanT, at 136,331 to 137,689 _06867 MPMX19_06868: MPMX19_06868 - hypothetical protein, at 137,801 to 139,618 _06868 Position (kb) 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 135.670 kb on + strand, within MPMX19_06866at 135.784 kb on + strand, within MPMX19_06866at 136.111 kb on + strand, within MPMX19_06866at 136.174 kb on + strandat 136.395 kb on + strandat 136.395 kb on + strandat 136.395 kb on + strandat 136.395 kb on + strandat 136.395 kb on + strandat 136.396 kb on - strandat 136.396 kb on - strandat 136.396 kb on - strandat 136.396 kb on - strandat 136.396 kb on - strandat 136.599 kb on + strand, within MPMX19_06867at 136.599 kb on + strand, within MPMX19_06867at 136.599 kb on + strand, within MPMX19_06867at 136.599 kb on + strand, within MPMX19_06867at 136.599 kb on + strand, within MPMX19_06867at 136.600 kb on - strand, within MPMX19_06867at 136.600 kb on - strand, within MPMX19_06867at 136.600 kb on - strand, within MPMX19_06867at 136.600 kb on - strand, within MPMX19_06867at 136.600 kb on - strand, within MPMX19_06867at 136.600 kb on - strand, within MPMX19_06867at 136.600 kb on - strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.694 kb on + strand, within MPMX19_06867at 136.694 kb on + strand, within MPMX19_06867at 136.694 kb on + strand, within MPMX19_06867at 136.695 kb on - strand, within MPMX19_06867at 136.695 kb on - strand, within MPMX19_06867at 136.695 kb on - strand, within MPMX19_06867at 136.695 kb on - strand, within MPMX19_06867at 136.695 kb on - strand, within MPMX19_06867at 136.722 kb on + strand, within MPMX19_06867at 136.722 kb on + strand, within MPMX19_06867at 136.944 kb on + strand, within MPMX19_06867at 136.944 kb on + strand, within MPMX19_06867at 136.944 kb on + strand, within MPMX19_06867at 136.945 kb on - strand, within MPMX19_06867at 136.977 kb on + strand, within MPMX19_06867at 136.978 kb on + strand, within MPMX19_06867at 136.978 kb on + strand, within MPMX19_06867at 136.979 kb on - strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 137.262 kb on + strand, within MPMX19_06867at 137.466 kb on + strand, within MPMX19_06867at 137.467 kb on - strand, within MPMX19_06867at 137.467 kb on - strand, within MPMX19_06867at 137.467 kb on - strand, within MPMX19_06867at 137.586 kb on + strandat 137.586 kb on + strandat 137.586 kb on + strandat 137.586 kb on + strandat 137.586 kb on + strandat 137.586 kb on + strandat 137.586 kb on + strandat 137.587 kb on - strandat 137.587 kb on - strandat 137.587 kb on - strandat 137.587 kb on - strandat 137.587 kb on - strandat 137.587 kb on - strandat 137.587 kb on - strandat 137.587 kb on - strandat 137.587 kb on - strandat 137.587 kb on - strandat 137.587 kb on - strandat 137.613 kb on + strandat 137.614 kb on - strandat 137.689 kb on + strandat 137.689 kb on + strandat 137.784 kb on + strandat 137.784 kb on + strandat 137.785 kb on - strandat 137.785 kb on - strandat 137.785 kb on - strandat 137.856 kb on + strandat 137.880 kb on + strandat 137.880 kb on + strandat 137.881 kb on - strandat 137.881 kb on - strandat 137.881 kb on - strandat 137.881 kb on - strandat 137.898 kb on + strandat 137.898 kb on + strandat 137.898 kb on + strandat 137.898 kb on + strandat 137.898 kb on + strandat 137.898 kb on + strandat 137.899 kb on - strandat 137.899 kb on - strandat 137.899 kb on - strandat 137.899 kb on - strandat 137.899 kb on - strandat 137.899 kb on - strandat 137.899 kb on - strandat 137.899 kb on - strandat 137.967 kb on + strandat 137.968 kb on - strandat 137.968 kb on - strandat 137.968 kb on - strandat 137.968 kb on - strandat 138.039 kb on + strand, within MPMX19_06868at 138.063 kb on + strand, within MPMX19_06868at 138.174 kb on + strand, within MPMX19_06868at 138.174 kb on + strand, within MPMX19_06868at 138.175 kb on - strand, within MPMX19_06868at 138.210 kb on + strand, within MPMX19_06868at 138.210 kb on + strand, within MPMX19_06868at 138.210 kb on + strand, within MPMX19_06868at 138.210 kb on + strand, within MPMX19_06868at 138.210 kb on + strand, within MPMX19_06868at 138.210 kb on + strand, within MPMX19_06868at 138.210 kb on + strand, within MPMX19_06868at 138.210 kb on + strand, within MPMX19_06868at 138.211 kb on - strand, within MPMX19_06868at 138.211 kb on - strand, within MPMX19_06868at 138.211 kb on - strand, within MPMX19_06868at 138.211 kb on - strand, within MPMX19_06868at 138.211 kb on - strand, within MPMX19_06868at 138.211 kb on - strand, within MPMX19_06868at 138.211 kb on - strand, within MPMX19_06868at 138.211 kb on - strand, within MPMX19_06868at 138.430 kb on + strand, within MPMX19_06868at 138.431 kb on - strand, within MPMX19_06868at 138.431 kb on - strand, within MPMX19_06868at 138.431 kb on - strand, within MPMX19_06868at 138.516 kb on + strand, within MPMX19_06868at 138.517 kb on - strand, within MPMX19_06868at 138.517 kb on - strand, within MPMX19_06868at 138.604 kb on - strand, within MPMX19_06868at 138.669 kb on + strand, within MPMX19_06868at 138.670 kb on - strand, within MPMX19_06868at 138.670 kb on - strand, within MPMX19_06868at 138.670 kb on - strand, within MPMX19_06868

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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135,670 + MPMX19_06866 0.39 +0.1
135,784 + MPMX19_06866 0.52 -0.6
136,111 + MPMX19_06866 0.89 -1.2
136,174 + +1.8
136,395 + -0.9
136,395 + -1.4
136,395 + +0.8
136,395 + -0.5
136,395 + +1.3
136,396 - +0.4
136,396 - +0.5
136,396 - -0.1
136,396 - -1.3
136,396 - -0.2
136,599 + MPMX19_06867 0.20 -0.7
136,599 + MPMX19_06867 0.20 +0.6
136,599 + MPMX19_06867 0.20 -0.7
136,599 + MPMX19_06867 0.20 -0.5
136,599 + MPMX19_06867 0.20 -1.1
136,600 - MPMX19_06867 0.20 -0.7
136,600 - MPMX19_06867 0.20 -0.0
136,600 - MPMX19_06867 0.20 -0.1
136,600 - MPMX19_06867 0.20 -0.2
136,600 - MPMX19_06867 0.20 +0.5
136,600 - MPMX19_06867 0.20 -1.4
136,600 - MPMX19_06867 0.20 -0.3
136,665 + MPMX19_06867 0.25 -0.1
136,665 + MPMX19_06867 0.25 +0.5
136,665 + MPMX19_06867 0.25 -0.6
136,665 + MPMX19_06867 0.25 -0.1
136,665 + MPMX19_06867 0.25 -0.1
136,665 + MPMX19_06867 0.25 +0.7
136,665 + MPMX19_06867 0.25 -0.4
136,665 + MPMX19_06867 0.25 -0.6
136,665 + MPMX19_06867 0.25 -2.7
136,666 - MPMX19_06867 0.25 -0.9
136,666 - MPMX19_06867 0.25 -1.4
136,666 - MPMX19_06867 0.25 -0.1
136,666 - MPMX19_06867 0.25 -0.2
136,666 - MPMX19_06867 0.25 -1.0
136,666 - MPMX19_06867 0.25 +0.6
136,666 - MPMX19_06867 0.25 +1.3
136,666 - MPMX19_06867 0.25 -0.2
136,666 - MPMX19_06867 0.25 -0.6
136,666 - MPMX19_06867 0.25 +0.1
136,694 + MPMX19_06867 0.27 +0.3
136,694 + MPMX19_06867 0.27 -0.4
136,694 + MPMX19_06867 0.27 -1.1
136,695 - MPMX19_06867 0.27 -1.9
136,695 - MPMX19_06867 0.27 +1.1
136,695 - MPMX19_06867 0.27 -0.1
136,695 - MPMX19_06867 0.27 -1.7
136,695 - MPMX19_06867 0.27 +0.1
136,722 + MPMX19_06867 0.29 +0.4
136,722 + MPMX19_06867 0.29 +0.5
136,944 + MPMX19_06867 0.45 +0.3
136,944 + MPMX19_06867 0.45 -0.1
136,944 + MPMX19_06867 0.45 -0.6
136,945 - MPMX19_06867 0.45 -0.1
136,977 + MPMX19_06867 0.48 +1.1
136,978 + MPMX19_06867 0.48 -0.4
136,978 + MPMX19_06867 0.48 +1.1
136,979 - MPMX19_06867 0.48 -0.2
136,989 + MPMX19_06867 0.48 +1.7
136,989 + MPMX19_06867 0.48 -1.5
136,989 + MPMX19_06867 0.48 +0.1
136,989 + MPMX19_06867 0.48 -0.9
136,989 + MPMX19_06867 0.48 +1.1
136,989 + MPMX19_06867 0.48 -1.7
136,989 + MPMX19_06867 0.48 -0.9
136,989 + MPMX19_06867 0.48 +1.8
136,989 + MPMX19_06867 0.48 +0.3
136,989 + MPMX19_06867 0.48 +1.2
136,989 + MPMX19_06867 0.48 -1.7
136,990 - MPMX19_06867 0.48 -0.7
136,990 - MPMX19_06867 0.48 -0.5
136,990 - MPMX19_06867 0.48 -0.3
136,990 - MPMX19_06867 0.48 -0.1
136,990 - MPMX19_06867 0.48 -1.6
136,990 - MPMX19_06867 0.48 -0.2
136,990 - MPMX19_06867 0.48 +0.1
136,990 - MPMX19_06867 0.48 -1.6
136,990 - MPMX19_06867 0.48 -1.9
137,262 + MPMX19_06867 0.69 +0.5
137,466 + MPMX19_06867 0.84 -0.1
137,467 - MPMX19_06867 0.84 -1.7
137,467 - MPMX19_06867 0.84 -0.1
137,467 - MPMX19_06867 0.84 +0.3
137,586 + +0.8
137,586 + -0.5
137,586 + -0.7
137,586 + -1.1
137,586 + -1.1
137,586 + -1.4
137,586 + +0.2
137,587 - -0.7
137,587 - +1.2
137,587 - +0.5
137,587 - +0.3
137,587 - -0.6
137,587 - +0.7
137,587 - +0.7
137,587 - -1.5
137,587 - +0.2
137,587 - +0.6
137,587 - -0.2
137,613 + -1.7
137,614 - -0.1
137,689 + +0.3
137,689 + -0.2
137,784 + +0.7
137,784 + +0.3
137,785 - +0.2
137,785 - -1.4
137,785 - -0.6
137,856 + -0.2
137,880 + +0.9
137,880 + -0.6
137,881 - -2.8
137,881 - +0.7
137,881 - +0.5
137,881 - -0.1
137,898 + +1.8
137,898 + -0.5
137,898 + -0.5
137,898 + +0.1
137,898 + -0.5
137,898 + -1.7
137,899 - -1.8
137,899 - -0.5
137,899 - +0.5
137,899 - +2.1
137,899 - +0.8
137,899 - -0.7
137,899 - -1.4
137,899 - +0.5
137,967 + -0.5
137,968 - -0.2
137,968 - -0.4
137,968 - -1.0
137,968 - +1.5
138,039 + MPMX19_06868 0.13 +0.6
138,063 + MPMX19_06868 0.14 -0.6
138,174 + MPMX19_06868 0.21 -1.2
138,174 + MPMX19_06868 0.21 -1.4
138,175 - MPMX19_06868 0.21 +0.2
138,210 + MPMX19_06868 0.22 -0.7
138,210 + MPMX19_06868 0.22 +0.3
138,210 + MPMX19_06868 0.22 +0.5
138,210 + MPMX19_06868 0.22 -3.2
138,210 + MPMX19_06868 0.22 -0.9
138,210 + MPMX19_06868 0.22 +0.1
138,210 + MPMX19_06868 0.22 -1.9
138,210 + MPMX19_06868 0.22 +0.1
138,211 - MPMX19_06868 0.23 +2.1
138,211 - MPMX19_06868 0.23 +0.8
138,211 - MPMX19_06868 0.23 +1.8
138,211 - MPMX19_06868 0.23 -0.9
138,211 - MPMX19_06868 0.23 -0.3
138,211 - MPMX19_06868 0.23 -0.2
138,211 - MPMX19_06868 0.23 -1.1
138,211 - MPMX19_06868 0.23 -1.3
138,430 + MPMX19_06868 0.35 -0.9
138,431 - MPMX19_06868 0.35 -1.1
138,431 - MPMX19_06868 0.35 +1.6
138,431 - MPMX19_06868 0.35 -1.3
138,516 + MPMX19_06868 0.39 +1.3
138,517 - MPMX19_06868 0.39 -0.9
138,517 - MPMX19_06868 0.39 -1.2
138,604 - MPMX19_06868 0.44 +0.1
138,669 + MPMX19_06868 0.48 -1.2
138,670 - MPMX19_06868 0.48 -0.7
138,670 - MPMX19_06868 0.48 +0.3
138,670 - MPMX19_06868 0.48 -1.4

Or see this region's nucleotide sequence