Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06814 and MPMX19_06815 are separated by 62 nucleotides MPMX19_06815 and MPMX19_06816 are separated by 98 nucleotides
MPMX19_06814: MPMX19_06814 - Glyoxylate/hydroxypyruvate reductase A, at 79,955 to 80,902
_06814
MPMX19_06815: MPMX19_06815 - hypothetical protein, at 80,965 to 81,561
_06815
MPMX19_06816: MPMX19_06816 - Glycine betaine-binding periplasmic protein OusX, at 81,660 to 82,697
_06816
Position (kb) 80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 80.908 kb on + strand at 80.908 kb on + strand at 80.908 kb on + strand at 80.908 kb on + strand at 80.910 kb on + strand at 80.910 kb on + strand at 80.911 kb on - strand at 80.911 kb on - strand at 80.911 kb on - strand at 80.911 kb on - strand at 81.320 kb on + strand, within MPMX19_06815 at 81.320 kb on + strand, within MPMX19_06815 at 81.320 kb on + strand, within MPMX19_06815 at 81.321 kb on - strand, within MPMX19_06815 at 81.321 kb on - strand, within MPMX19_06815 at 81.321 kb on - strand, within MPMX19_06815 at 81.321 kb on - strand, within MPMX19_06815 at 82.063 kb on + strand, within MPMX19_06816 at 82.063 kb on + strand, within MPMX19_06816 at 82.064 kb on - strand, within MPMX19_06816 at 82.123 kb on + strand, within MPMX19_06816 at 82.123 kb on + strand, within MPMX19_06816 at 82.123 kb on + strand, within MPMX19_06816 at 82.123 kb on + strand, within MPMX19_06816 at 82.123 kb on + strand, within MPMX19_06816 at 82.123 kb on + strand, within MPMX19_06816 at 82.124 kb on - strand, within MPMX19_06816 at 82.124 kb on - strand, within MPMX19_06816 at 82.124 kb on - strand, within MPMX19_06816 at 82.505 kb on - strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.549 kb on + strand, within MPMX19_06816 at 82.550 kb on - strand, within MPMX19_06816 at 82.550 kb on - strand, within MPMX19_06816 at 82.550 kb on - strand, within MPMX19_06816 at 82.550 kb on - strand, within MPMX19_06816 at 82.550 kb on - strand, within MPMX19_06816 at 82.550 kb on - strand, within MPMX19_06816 at 82.550 kb on - strand, within MPMX19_06816
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 80,908 + -1.1 80,908 + -0.7 80,908 + -0.3 80,908 + -2.2 80,910 + -2.4 80,910 + +0.1 80,911 - -0.2 80,911 - -1.1 80,911 - -2.9 80,911 - -0.6 81,320 + MPMX19_06815 0.59 -0.6 81,320 + MPMX19_06815 0.59 +0.2 81,320 + MPMX19_06815 0.59 -3.3 81,321 - MPMX19_06815 0.60 +0.9 81,321 - MPMX19_06815 0.60 -2.6 81,321 - MPMX19_06815 0.60 -0.9 81,321 - MPMX19_06815 0.60 -0.9 82,063 + MPMX19_06816 0.39 -0.9 82,063 + MPMX19_06816 0.39 +1.4 82,064 - MPMX19_06816 0.39 -0.2 82,123 + MPMX19_06816 0.45 +0.3 82,123 + MPMX19_06816 0.45 -1.3 82,123 + MPMX19_06816 0.45 -0.4 82,123 + MPMX19_06816 0.45 -0.9 82,123 + MPMX19_06816 0.45 -0.7 82,123 + MPMX19_06816 0.45 +0.1 82,124 - MPMX19_06816 0.45 -1.6 82,124 - MPMX19_06816 0.45 +0.6 82,124 - MPMX19_06816 0.45 -1.8 82,505 - MPMX19_06816 0.81 -0.9 82,549 + MPMX19_06816 0.86 -0.2 82,549 + MPMX19_06816 0.86 -0.0 82,549 + MPMX19_06816 0.86 +0.2 82,549 + MPMX19_06816 0.86 -0.4 82,549 + MPMX19_06816 0.86 +0.3 82,549 + MPMX19_06816 0.86 +0.2 82,549 + MPMX19_06816 0.86 -0.4 82,549 + MPMX19_06816 0.86 -0.5 82,549 + MPMX19_06816 0.86 +0.7 82,549 + MPMX19_06816 0.86 -2.0 82,549 + MPMX19_06816 0.86 +0.5 82,549 + MPMX19_06816 0.86 -0.7 82,549 + MPMX19_06816 0.86 -0.0 82,550 - MPMX19_06816 0.86 +0.9 82,550 - MPMX19_06816 0.86 -3.1 82,550 - MPMX19_06816 0.86 -2.5 82,550 - MPMX19_06816 0.86 -2.0 82,550 - MPMX19_06816 0.86 -0.7 82,550 - MPMX19_06816 0.86 -1.1 82,550 - MPMX19_06816 0.86 -0.8
Or see this region's nucleotide sequence