Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06801 and MPMX19_06802 overlap by 4 nucleotides MPMX19_06802 and MPMX19_06803 are separated by 24 nucleotides MPMX19_06803 and MPMX19_06804 are separated by 172 nucleotides
MPMX19_06801: MPMX19_06801 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 65,624 to 66,955
_06801
MPMX19_06802: MPMX19_06802 - hypothetical protein, at 66,952 to 67,503
_06802
MPMX19_06803: MPMX19_06803 - Solute-binding protein, at 67,528 to 68,562
_06803
MPMX19_06804: MPMX19_06804 - hypothetical protein, at 68,735 to 69,721
_06804
Position (kb) 67
68
69 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 66.541 kb on - strand, within MPMX19_06801 at 66.541 kb on - strand, within MPMX19_06801 at 66.772 kb on - strand, within MPMX19_06801 at 66.772 kb on - strand, within MPMX19_06801 at 66.772 kb on - strand, within MPMX19_06801 at 66.772 kb on - strand, within MPMX19_06801 at 66.772 kb on - strand, within MPMX19_06801 at 66.772 kb on - strand, within MPMX19_06801 at 66.849 kb on + strand at 66.849 kb on + strand at 66.849 kb on + strand at 66.850 kb on - strand at 66.850 kb on - strand at 66.850 kb on - strand at 66.850 kb on - strand at 66.850 kb on - strand at 67.646 kb on + strand, within MPMX19_06803 at 67.647 kb on - strand, within MPMX19_06803 at 67.647 kb on - strand, within MPMX19_06803 at 67.715 kb on - strand, within MPMX19_06803 at 67.847 kb on + strand, within MPMX19_06803 at 67.847 kb on + strand, within MPMX19_06803 at 67.847 kb on + strand, within MPMX19_06803 at 67.847 kb on + strand, within MPMX19_06803 at 67.847 kb on + strand, within MPMX19_06803 at 67.847 kb on + strand, within MPMX19_06803 at 67.847 kb on + strand, within MPMX19_06803 at 67.848 kb on - strand, within MPMX19_06803 at 67.848 kb on - strand, within MPMX19_06803 at 67.848 kb on - strand, within MPMX19_06803 at 67.848 kb on - strand, within MPMX19_06803 at 67.850 kb on + strand, within MPMX19_06803 at 67.850 kb on + strand, within MPMX19_06803 at 67.850 kb on + strand, within MPMX19_06803 at 67.851 kb on - strand, within MPMX19_06803 at 67.851 kb on - strand, within MPMX19_06803 at 67.851 kb on - strand, within MPMX19_06803 at 67.851 kb on - strand, within MPMX19_06803 at 68.141 kb on + strand, within MPMX19_06803 at 68.141 kb on + strand, within MPMX19_06803 at 68.142 kb on - strand, within MPMX19_06803 at 68.142 kb on - strand, within MPMX19_06803 at 68.142 kb on - strand, within MPMX19_06803 at 68.142 kb on - strand, within MPMX19_06803 at 68.142 kb on - strand, within MPMX19_06803 at 68.142 kb on - strand, within MPMX19_06803 at 68.174 kb on + strand, within MPMX19_06803 at 68.174 kb on + strand, within MPMX19_06803 at 68.175 kb on - strand, within MPMX19_06803 at 68.175 kb on - strand, within MPMX19_06803 at 68.175 kb on - strand, within MPMX19_06803 at 68.357 kb on + strand, within MPMX19_06803 at 69.114 kb on + strand, within MPMX19_06804 at 69.114 kb on + strand, within MPMX19_06804 at 69.114 kb on + strand, within MPMX19_06804 at 69.115 kb on - strand, within MPMX19_06804 at 69.115 kb on - strand, within MPMX19_06804
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 66,541 - MPMX19_06801 0.69 +1.1 66,541 - MPMX19_06801 0.69 -0.4 66,772 - MPMX19_06801 0.86 +0.8 66,772 - MPMX19_06801 0.86 +1.0 66,772 - MPMX19_06801 0.86 -1.5 66,772 - MPMX19_06801 0.86 -1.2 66,772 - MPMX19_06801 0.86 +1.5 66,772 - MPMX19_06801 0.86 -0.2 66,849 + -1.7 66,849 + -1.4 66,849 + +0.2 66,850 - -2.8 66,850 - -0.5 66,850 - -1.1 66,850 - +0.9 66,850 - -2.6 67,646 + MPMX19_06803 0.11 -0.9 67,647 - MPMX19_06803 0.11 +0.4 67,647 - MPMX19_06803 0.11 -0.3 67,715 - MPMX19_06803 0.18 -1.9 67,847 + MPMX19_06803 0.31 -0.7 67,847 + MPMX19_06803 0.31 -0.1 67,847 + MPMX19_06803 0.31 +0.6 67,847 + MPMX19_06803 0.31 +0.2 67,847 + MPMX19_06803 0.31 +1.8 67,847 + MPMX19_06803 0.31 +0.6 67,847 + MPMX19_06803 0.31 +1.8 67,848 - MPMX19_06803 0.31 -1.4 67,848 - MPMX19_06803 0.31 -0.2 67,848 - MPMX19_06803 0.31 -0.7 67,848 - MPMX19_06803 0.31 -1.3 67,850 + MPMX19_06803 0.31 -0.9 67,850 + MPMX19_06803 0.31 -0.2 67,850 + MPMX19_06803 0.31 -0.1 67,851 - MPMX19_06803 0.31 -2.4 67,851 - MPMX19_06803 0.31 -0.7 67,851 - MPMX19_06803 0.31 -0.7 67,851 - MPMX19_06803 0.31 -0.2 68,141 + MPMX19_06803 0.59 +0.6 68,141 + MPMX19_06803 0.59 +0.7 68,142 - MPMX19_06803 0.59 -0.2 68,142 - MPMX19_06803 0.59 +1.1 68,142 - MPMX19_06803 0.59 -0.6 68,142 - MPMX19_06803 0.59 -0.2 68,142 - MPMX19_06803 0.59 -0.1 68,142 - MPMX19_06803 0.59 -1.3 68,174 + MPMX19_06803 0.62 -1.2 68,174 + MPMX19_06803 0.62 -1.2 68,175 - MPMX19_06803 0.63 -0.7 68,175 - MPMX19_06803 0.63 +0.5 68,175 - MPMX19_06803 0.63 -0.6 68,357 + MPMX19_06803 0.80 -0.7 69,114 + MPMX19_06804 0.38 +1.1 69,114 + MPMX19_06804 0.38 -0.1 69,114 + MPMX19_06804 0.38 +0.1 69,115 - MPMX19_06804 0.39 -1.2 69,115 - MPMX19_06804 0.39 +0.5
Or see this region's nucleotide sequence