Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06796 and MPMX19_06797 are separated by 14 nucleotides MPMX19_06797 and MPMX19_06798 are separated by 17 nucleotides MPMX19_06798 and MPMX19_06799 are separated by 59 nucleotides MPMX19_06799 and MPMX19_06800 overlap by 4 nucleotides
MPMX19_06796: MPMX19_06796 - 2-oxo-hept-4-ene-1,7-dioate hydratase, at 62,081 to 62,884
_06796
MPMX19_06797: MPMX19_06797 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 62,899 to 63,288
_06797
MPMX19_06798: MPMX19_06798 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 63,306 to 64,154
_06798
MPMX19_06799: MPMX19_06799 - Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase, at 64,214 to 64,954
_06799
MPMX19_06800: MPMX19_06800 - Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase, at 64,951 to 65,619
_06800
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 62.308 kb on - strand, within MPMX19_06796 at 62.308 kb on - strand, within MPMX19_06796 at 62.487 kb on + strand, within MPMX19_06796 at 62.487 kb on + strand, within MPMX19_06796 at 62.487 kb on + strand, within MPMX19_06796 at 62.487 kb on + strand, within MPMX19_06796 at 62.487 kb on + strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.488 kb on - strand, within MPMX19_06796 at 62.766 kb on + strand, within MPMX19_06796 at 62.766 kb on + strand, within MPMX19_06796 at 62.766 kb on + strand, within MPMX19_06796 at 62.766 kb on + strand, within MPMX19_06796 at 62.766 kb on + strand, within MPMX19_06796 at 62.766 kb on + strand, within MPMX19_06796 at 62.767 kb on - strand, within MPMX19_06796 at 62.767 kb on - strand, within MPMX19_06796 at 62.767 kb on - strand, within MPMX19_06796 at 62.767 kb on - strand, within MPMX19_06796 at 62.767 kb on - strand, within MPMX19_06796 at 62.912 kb on + strand at 62.912 kb on + strand at 62.912 kb on + strand at 62.913 kb on - strand at 62.913 kb on - strand at 63.266 kb on + strand at 63.266 kb on + strand at 63.266 kb on + strand at 63.267 kb on - strand at 63.267 kb on - strand at 63.267 kb on - strand at 63.267 kb on - strand at 63.267 kb on - strand at 63.289 kb on - strand at 63.355 kb on + strand at 63.385 kb on + strand at 63.385 kb on + strand at 63.386 kb on - strand at 63.433 kb on + strand, within MPMX19_06798 at 63.433 kb on + strand, within MPMX19_06798 at 63.434 kb on - strand, within MPMX19_06798 at 63.434 kb on - strand, within MPMX19_06798 at 63.460 kb on + strand, within MPMX19_06798 at 63.460 kb on + strand, within MPMX19_06798 at 63.460 kb on + strand, within MPMX19_06798 at 63.460 kb on + strand, within MPMX19_06798 at 63.460 kb on + strand, within MPMX19_06798 at 63.460 kb on + strand, within MPMX19_06798 at 63.461 kb on - strand, within MPMX19_06798 at 63.461 kb on - strand, within MPMX19_06798 at 63.461 kb on - strand, within MPMX19_06798 at 63.461 kb on - strand, within MPMX19_06798 at 63.461 kb on - strand, within MPMX19_06798 at 63.461 kb on - strand, within MPMX19_06798 at 63.461 kb on - strand, within MPMX19_06798 at 63.565 kb on + strand, within MPMX19_06798 at 63.565 kb on + strand, within MPMX19_06798 at 63.566 kb on - strand, within MPMX19_06798 at 63.566 kb on - strand, within MPMX19_06798 at 63.640 kb on + strand, within MPMX19_06798 at 63.640 kb on + strand, within MPMX19_06798 at 63.640 kb on + strand, within MPMX19_06798 at 63.640 kb on + strand, within MPMX19_06798 at 63.640 kb on + strand, within MPMX19_06798 at 63.640 kb on + strand, within MPMX19_06798 at 63.640 kb on + strand, within MPMX19_06798 at 63.641 kb on - strand, within MPMX19_06798 at 63.641 kb on - strand, within MPMX19_06798 at 63.641 kb on - strand, within MPMX19_06798 at 63.641 kb on - strand, within MPMX19_06798 at 63.641 kb on - strand, within MPMX19_06798 at 63.641 kb on - strand, within MPMX19_06798 at 63.757 kb on + strand, within MPMX19_06798 at 63.757 kb on + strand, within MPMX19_06798 at 63.757 kb on + strand, within MPMX19_06798 at 63.757 kb on + strand, within MPMX19_06798 at 63.757 kb on + strand, within MPMX19_06798 at 63.757 kb on + strand, within MPMX19_06798 at 63.757 kb on + strand, within MPMX19_06798 at 63.781 kb on + strand, within MPMX19_06798 at 63.781 kb on + strand, within MPMX19_06798 at 63.881 kb on - strand, within MPMX19_06798 at 63.886 kb on + strand, within MPMX19_06798 at 63.928 kb on + strand, within MPMX19_06798 at 63.928 kb on + strand, within MPMX19_06798 at 63.929 kb on - strand, within MPMX19_06798 at 63.929 kb on - strand, within MPMX19_06798 at 64.105 kb on + strand at 64.105 kb on + strand at 64.105 kb on + strand at 64.105 kb on + strand at 64.105 kb on + strand at 64.106 kb on - strand at 64.106 kb on - strand at 64.106 kb on - strand at 64.106 kb on - strand at 64.106 kb on - strand at 64.106 kb on - strand at 64.359 kb on + strand, within MPMX19_06799 at 64.360 kb on - strand, within MPMX19_06799 at 64.540 kb on - strand, within MPMX19_06799 at 64.542 kb on + strand, within MPMX19_06799 at 64.542 kb on + strand, within MPMX19_06799 at 64.542 kb on + strand, within MPMX19_06799 at 64.542 kb on + strand, within MPMX19_06799 at 64.543 kb on - strand, within MPMX19_06799 at 64.543 kb on - strand, within MPMX19_06799 at 64.543 kb on - strand, within MPMX19_06799 at 64.543 kb on - strand, within MPMX19_06799 at 64.554 kb on + strand, within MPMX19_06799 at 64.554 kb on + strand, within MPMX19_06799 at 64.555 kb on - strand, within MPMX19_06799 at 64.569 kb on + strand, within MPMX19_06799 at 64.569 kb on + strand, within MPMX19_06799 at 64.570 kb on - strand, within MPMX19_06799 at 64.570 kb on - strand, within MPMX19_06799 at 64.570 kb on - strand, within MPMX19_06799 at 64.605 kb on + strand, within MPMX19_06799 at 64.606 kb on - strand, within MPMX19_06799 at 64.668 kb on + strand, within MPMX19_06799 at 64.669 kb on - strand, within MPMX19_06799 at 64.669 kb on - strand, within MPMX19_06799 at 64.669 kb on - strand, within MPMX19_06799 at 64.669 kb on - strand, within MPMX19_06799 at 64.797 kb on + strand, within MPMX19_06799 at 64.797 kb on + strand, within MPMX19_06799 at 64.797 kb on + strand, within MPMX19_06799 at 64.797 kb on + strand, within MPMX19_06799 at 64.797 kb on + strand, within MPMX19_06799 at 64.798 kb on - strand, within MPMX19_06799 at 65.060 kb on - strand, within MPMX19_06800
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 62,308 - MPMX19_06796 0.28 -0.7 62,308 - MPMX19_06796 0.28 -1.1 62,487 + MPMX19_06796 0.50 -2.4 62,487 + MPMX19_06796 0.50 +0.8 62,487 + MPMX19_06796 0.50 -1.8 62,487 + MPMX19_06796 0.50 -1.6 62,487 + MPMX19_06796 0.50 +0.1 62,488 - MPMX19_06796 0.51 -1.1 62,488 - MPMX19_06796 0.51 +1.1 62,488 - MPMX19_06796 0.51 -0.5 62,488 - MPMX19_06796 0.51 +0.1 62,488 - MPMX19_06796 0.51 -1.7 62,488 - MPMX19_06796 0.51 -1.1 62,488 - MPMX19_06796 0.51 -1.2 62,488 - MPMX19_06796 0.51 +0.4 62,488 - MPMX19_06796 0.51 -1.4 62,488 - MPMX19_06796 0.51 -2.2 62,766 + MPMX19_06796 0.85 -0.5 62,766 + MPMX19_06796 0.85 -1.1 62,766 + MPMX19_06796 0.85 +0.5 62,766 + MPMX19_06796 0.85 -1.1 62,766 + MPMX19_06796 0.85 +1.3 62,766 + MPMX19_06796 0.85 -1.5 62,767 - MPMX19_06796 0.85 -0.4 62,767 - MPMX19_06796 0.85 +1.6 62,767 - MPMX19_06796 0.85 -1.1 62,767 - MPMX19_06796 0.85 -0.6 62,767 - MPMX19_06796 0.85 -1.6 62,912 + +0.9 62,912 + +1.6 62,912 + +0.3 62,913 - -1.4 62,913 - -1.8 63,266 + -1.5 63,266 + -2.2 63,266 + -0.5 63,267 - -0.4 63,267 - -0.1 63,267 - -0.4 63,267 - -2.4 63,267 - +0.1 63,289 - -2.2 63,355 + -1.2 63,385 + -0.2 63,385 + -1.4 63,386 - +0.1 63,433 + MPMX19_06798 0.15 -0.4 63,433 + MPMX19_06798 0.15 -1.6 63,434 - MPMX19_06798 0.15 -1.7 63,434 - MPMX19_06798 0.15 -0.7 63,460 + MPMX19_06798 0.18 -0.4 63,460 + MPMX19_06798 0.18 -1.7 63,460 + MPMX19_06798 0.18 +1.0 63,460 + MPMX19_06798 0.18 -0.2 63,460 + MPMX19_06798 0.18 -0.7 63,460 + MPMX19_06798 0.18 -0.7 63,461 - MPMX19_06798 0.18 -0.1 63,461 - MPMX19_06798 0.18 -1.0 63,461 - MPMX19_06798 0.18 -1.4 63,461 - MPMX19_06798 0.18 +0.3 63,461 - MPMX19_06798 0.18 -0.2 63,461 - MPMX19_06798 0.18 +0.1 63,461 - MPMX19_06798 0.18 -0.3 63,565 + MPMX19_06798 0.31 -0.2 63,565 + MPMX19_06798 0.31 +0.1 63,566 - MPMX19_06798 0.31 -1.0 63,566 - MPMX19_06798 0.31 -0.5 63,640 + MPMX19_06798 0.39 +0.5 63,640 + MPMX19_06798 0.39 -0.2 63,640 + MPMX19_06798 0.39 -1.1 63,640 + MPMX19_06798 0.39 -1.4 63,640 + MPMX19_06798 0.39 +0.2 63,640 + MPMX19_06798 0.39 +1.8 63,640 + MPMX19_06798 0.39 +1.1 63,641 - MPMX19_06798 0.39 -0.6 63,641 - MPMX19_06798 0.39 -0.2 63,641 - MPMX19_06798 0.39 -2.4 63,641 - MPMX19_06798 0.39 -2.4 63,641 - MPMX19_06798 0.39 -0.1 63,641 - MPMX19_06798 0.39 +0.9 63,757 + MPMX19_06798 0.53 +0.0 63,757 + MPMX19_06798 0.53 +0.1 63,757 + MPMX19_06798 0.53 -1.4 63,757 + MPMX19_06798 0.53 -0.2 63,757 + MPMX19_06798 0.53 -1.8 63,757 + MPMX19_06798 0.53 +0.1 63,757 + MPMX19_06798 0.53 -0.3 63,781 + MPMX19_06798 0.56 +0.5 63,781 + MPMX19_06798 0.56 -1.9 63,881 - MPMX19_06798 0.68 -0.7 63,886 + MPMX19_06798 0.68 -0.2 63,928 + MPMX19_06798 0.73 +0.7 63,928 + MPMX19_06798 0.73 -0.9 63,929 - MPMX19_06798 0.73 -0.7 63,929 - MPMX19_06798 0.73 -1.0 64,105 + +0.2 64,105 + +0.7 64,105 + +0.8 64,105 + +0.2 64,105 + +0.3 64,106 - -0.3 64,106 - -1.3 64,106 - -2.0 64,106 - +0.7 64,106 - +0.3 64,106 - -2.3 64,359 + MPMX19_06799 0.20 -2.2 64,360 - MPMX19_06799 0.20 -0.7 64,540 - MPMX19_06799 0.44 -0.9 64,542 + MPMX19_06799 0.44 +0.2 64,542 + MPMX19_06799 0.44 -0.5 64,542 + MPMX19_06799 0.44 -1.8 64,542 + MPMX19_06799 0.44 -0.1 64,543 - MPMX19_06799 0.44 -0.6 64,543 - MPMX19_06799 0.44 -1.0 64,543 - MPMX19_06799 0.44 +0.1 64,543 - MPMX19_06799 0.44 -0.8 64,554 + MPMX19_06799 0.46 -0.6 64,554 + MPMX19_06799 0.46 -1.7 64,555 - MPMX19_06799 0.46 -0.5 64,569 + MPMX19_06799 0.48 +0.2 64,569 + MPMX19_06799 0.48 -0.5 64,570 - MPMX19_06799 0.48 -0.9 64,570 - MPMX19_06799 0.48 -0.4 64,570 - MPMX19_06799 0.48 -0.9 64,605 + MPMX19_06799 0.53 -3.1 64,606 - MPMX19_06799 0.53 +0.7 64,668 + MPMX19_06799 0.61 -1.0 64,669 - MPMX19_06799 0.61 -1.1 64,669 - MPMX19_06799 0.61 +0.2 64,669 - MPMX19_06799 0.61 -2.6 64,669 - MPMX19_06799 0.61 +0.5 64,797 + MPMX19_06799 0.79 -0.4 64,797 + MPMX19_06799 0.79 +1.8 64,797 + MPMX19_06799 0.79 -1.2 64,797 + MPMX19_06799 0.79 -0.5 64,797 + MPMX19_06799 0.79 -0.4 64,798 - MPMX19_06799 0.79 +0.0 65,060 - MPMX19_06800 0.16 +0.2
Or see this region's nucleotide sequence