Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06796

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06794 and MPMX19_06795 are separated by 28 nucleotidesMPMX19_06795 and MPMX19_06796 are separated by 20 nucleotidesMPMX19_06796 and MPMX19_06797 are separated by 14 nucleotidesMPMX19_06797 and MPMX19_06798 are separated by 17 nucleotides MPMX19_06794: MPMX19_06794 - Glutarate-semialdehyde dehydrogenase, at 59,753 to 61,207 _06794 MPMX19_06795: MPMX19_06795 - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, at 61,236 to 62,060 _06795 MPMX19_06796: MPMX19_06796 - 2-oxo-hept-4-ene-1,7-dioate hydratase, at 62,081 to 62,884 _06796 MPMX19_06797: MPMX19_06797 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 62,899 to 63,288 _06797 MPMX19_06798: MPMX19_06798 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 63,306 to 64,154 _06798 Position (kb) 62 63Strain fitness (log2 ratio) -2 -1 0 1 2at 61.215 kb on - strandat 61.241 kb on - strandat 61.387 kb on + strand, within MPMX19_06795at 61.388 kb on - strand, within MPMX19_06795at 61.661 kb on + strand, within MPMX19_06795at 61.975 kb on + strand, within MPMX19_06795at 61.975 kb on + strand, within MPMX19_06795at 61.976 kb on - strand, within MPMX19_06795at 61.976 kb on - strand, within MPMX19_06795at 62.082 kb on + strandat 62.083 kb on - strandat 62.083 kb on - strandat 62.083 kb on - strandat 62.118 kb on + strandat 62.308 kb on - strand, within MPMX19_06796at 62.308 kb on - strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.487 kb on + strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.488 kb on - strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.766 kb on + strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.767 kb on - strand, within MPMX19_06796at 62.912 kb on + strandat 62.912 kb on + strandat 62.912 kb on + strandat 62.913 kb on - strandat 62.913 kb on - strandat 63.266 kb on + strandat 63.266 kb on + strandat 63.266 kb on + strandat 63.267 kb on - strandat 63.267 kb on - strandat 63.267 kb on - strandat 63.267 kb on - strandat 63.267 kb on - strandat 63.289 kb on - strandat 63.355 kb on + strandat 63.385 kb on + strandat 63.385 kb on + strandat 63.386 kb on - strandat 63.433 kb on + strand, within MPMX19_06798at 63.433 kb on + strand, within MPMX19_06798at 63.434 kb on - strand, within MPMX19_06798at 63.434 kb on - strand, within MPMX19_06798at 63.460 kb on + strand, within MPMX19_06798at 63.460 kb on + strand, within MPMX19_06798at 63.460 kb on + strand, within MPMX19_06798at 63.460 kb on + strand, within MPMX19_06798at 63.460 kb on + strand, within MPMX19_06798at 63.460 kb on + strand, within MPMX19_06798at 63.461 kb on - strand, within MPMX19_06798at 63.461 kb on - strand, within MPMX19_06798at 63.461 kb on - strand, within MPMX19_06798at 63.461 kb on - strand, within MPMX19_06798at 63.461 kb on - strand, within MPMX19_06798at 63.461 kb on - strand, within MPMX19_06798at 63.461 kb on - strand, within MPMX19_06798at 63.565 kb on + strand, within MPMX19_06798at 63.565 kb on + strand, within MPMX19_06798at 63.566 kb on - strand, within MPMX19_06798at 63.566 kb on - strand, within MPMX19_06798at 63.640 kb on + strand, within MPMX19_06798at 63.640 kb on + strand, within MPMX19_06798at 63.640 kb on + strand, within MPMX19_06798at 63.640 kb on + strand, within MPMX19_06798at 63.640 kb on + strand, within MPMX19_06798at 63.640 kb on + strand, within MPMX19_06798at 63.640 kb on + strand, within MPMX19_06798at 63.641 kb on - strand, within MPMX19_06798at 63.641 kb on - strand, within MPMX19_06798at 63.641 kb on - strand, within MPMX19_06798at 63.641 kb on - strand, within MPMX19_06798at 63.641 kb on - strand, within MPMX19_06798at 63.641 kb on - strand, within MPMX19_06798at 63.757 kb on + strand, within MPMX19_06798at 63.757 kb on + strand, within MPMX19_06798at 63.757 kb on + strand, within MPMX19_06798at 63.757 kb on + strand, within MPMX19_06798at 63.757 kb on + strand, within MPMX19_06798at 63.757 kb on + strand, within MPMX19_06798at 63.757 kb on + strand, within MPMX19_06798at 63.781 kb on + strand, within MPMX19_06798at 63.781 kb on + strand, within MPMX19_06798at 63.881 kb on - strand, within MPMX19_06798

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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61,215 - -0.8
61,241 - +0.2
61,387 + MPMX19_06795 0.18 +0.9
61,388 - MPMX19_06795 0.18 -0.7
61,661 + MPMX19_06795 0.52 +0.1
61,975 + MPMX19_06795 0.90 -1.0
61,975 + MPMX19_06795 0.90 -0.1
61,976 - MPMX19_06795 0.90 -2.4
61,976 - MPMX19_06795 0.90 +0.3
62,082 + -0.9
62,083 - +0.1
62,083 - +0.5
62,083 - -1.3
62,118 + +0.4
62,308 - MPMX19_06796 0.28 -0.7
62,308 - MPMX19_06796 0.28 -1.1
62,487 + MPMX19_06796 0.50 -2.4
62,487 + MPMX19_06796 0.50 +0.8
62,487 + MPMX19_06796 0.50 -1.8
62,487 + MPMX19_06796 0.50 -1.6
62,487 + MPMX19_06796 0.50 +0.1
62,488 - MPMX19_06796 0.51 -1.1
62,488 - MPMX19_06796 0.51 +1.1
62,488 - MPMX19_06796 0.51 -0.5
62,488 - MPMX19_06796 0.51 +0.1
62,488 - MPMX19_06796 0.51 -1.7
62,488 - MPMX19_06796 0.51 -1.1
62,488 - MPMX19_06796 0.51 -1.2
62,488 - MPMX19_06796 0.51 +0.4
62,488 - MPMX19_06796 0.51 -1.4
62,488 - MPMX19_06796 0.51 -2.2
62,766 + MPMX19_06796 0.85 -0.5
62,766 + MPMX19_06796 0.85 -1.1
62,766 + MPMX19_06796 0.85 +0.5
62,766 + MPMX19_06796 0.85 -1.1
62,766 + MPMX19_06796 0.85 +1.3
62,766 + MPMX19_06796 0.85 -1.5
62,767 - MPMX19_06796 0.85 -0.4
62,767 - MPMX19_06796 0.85 +1.6
62,767 - MPMX19_06796 0.85 -1.1
62,767 - MPMX19_06796 0.85 -0.6
62,767 - MPMX19_06796 0.85 -1.6
62,912 + +0.9
62,912 + +1.6
62,912 + +0.3
62,913 - -1.4
62,913 - -1.8
63,266 + -1.5
63,266 + -2.2
63,266 + -0.5
63,267 - -0.4
63,267 - -0.1
63,267 - -0.4
63,267 - -2.4
63,267 - +0.1
63,289 - -2.2
63,355 + -1.2
63,385 + -0.2
63,385 + -1.4
63,386 - +0.1
63,433 + MPMX19_06798 0.15 -0.4
63,433 + MPMX19_06798 0.15 -1.6
63,434 - MPMX19_06798 0.15 -1.7
63,434 - MPMX19_06798 0.15 -0.7
63,460 + MPMX19_06798 0.18 -0.4
63,460 + MPMX19_06798 0.18 -1.7
63,460 + MPMX19_06798 0.18 +1.0
63,460 + MPMX19_06798 0.18 -0.2
63,460 + MPMX19_06798 0.18 -0.7
63,460 + MPMX19_06798 0.18 -0.7
63,461 - MPMX19_06798 0.18 -0.1
63,461 - MPMX19_06798 0.18 -1.0
63,461 - MPMX19_06798 0.18 -1.4
63,461 - MPMX19_06798 0.18 +0.3
63,461 - MPMX19_06798 0.18 -0.2
63,461 - MPMX19_06798 0.18 +0.1
63,461 - MPMX19_06798 0.18 -0.3
63,565 + MPMX19_06798 0.31 -0.2
63,565 + MPMX19_06798 0.31 +0.1
63,566 - MPMX19_06798 0.31 -1.0
63,566 - MPMX19_06798 0.31 -0.5
63,640 + MPMX19_06798 0.39 +0.5
63,640 + MPMX19_06798 0.39 -0.2
63,640 + MPMX19_06798 0.39 -1.1
63,640 + MPMX19_06798 0.39 -1.4
63,640 + MPMX19_06798 0.39 +0.2
63,640 + MPMX19_06798 0.39 +1.8
63,640 + MPMX19_06798 0.39 +1.1
63,641 - MPMX19_06798 0.39 -0.6
63,641 - MPMX19_06798 0.39 -0.2
63,641 - MPMX19_06798 0.39 -2.4
63,641 - MPMX19_06798 0.39 -2.4
63,641 - MPMX19_06798 0.39 -0.1
63,641 - MPMX19_06798 0.39 +0.9
63,757 + MPMX19_06798 0.53 +0.0
63,757 + MPMX19_06798 0.53 +0.1
63,757 + MPMX19_06798 0.53 -1.4
63,757 + MPMX19_06798 0.53 -0.2
63,757 + MPMX19_06798 0.53 -1.8
63,757 + MPMX19_06798 0.53 +0.1
63,757 + MPMX19_06798 0.53 -0.3
63,781 + MPMX19_06798 0.56 +0.5
63,781 + MPMX19_06798 0.56 -1.9
63,881 - MPMX19_06798 0.68 -0.7

Or see this region's nucleotide sequence