Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06722 and MPMX19_06723 are separated by 213 nucleotides MPMX19_06723 and MPMX19_06724 are separated by 3 nucleotides MPMX19_06724 and MPMX19_06725 are separated by 97 nucleotides
MPMX19_06722: MPMX19_06722 - Vitamin B12 import ATP-binding protein BtuD, at 295,819 to 297,252
_06722
MPMX19_06723: MPMX19_06723 - hypothetical protein, at 297,466 to 300,912
_06723
MPMX19_06724: MPMX19_06724 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 300,916 to 301,467
_06724
MPMX19_06725: MPMX19_06725 - dTDP-glucose 4,6-dehydratase 2, at 301,565 to 302,632
_06725
Position (kb) 297
298
299
300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 297.250 kb on + strand at 297.250 kb on + strand at 297.251 kb on - strand at 297.365 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.367 kb on - strand at 297.367 kb on - strand at 297.367 kb on - strand at 297.510 kb on + strand at 297.655 kb on + strand at 297.748 kb on + strand at 297.763 kb on + strand at 297.763 kb on + strand at 297.763 kb on + strand at 297.898 kb on + strand, within MPMX19_06723 at 297.898 kb on + strand, within MPMX19_06723 at 298.834 kb on + strand, within MPMX19_06723 at 298.834 kb on + strand, within MPMX19_06723 at 298.834 kb on + strand, within MPMX19_06723 at 299.032 kb on + strand, within MPMX19_06723 at 299.032 kb on + strand, within MPMX19_06723 at 299.032 kb on + strand, within MPMX19_06723 at 299.068 kb on + strand, within MPMX19_06723 at 299.068 kb on + strand, within MPMX19_06723 at 299.167 kb on + strand, within MPMX19_06723 at 299.167 kb on + strand, within MPMX19_06723 at 299.167 kb on + strand, within MPMX19_06723 at 299.260 kb on + strand, within MPMX19_06723 at 299.260 kb on + strand, within MPMX19_06723 at 299.278 kb on + strand, within MPMX19_06723 at 299.317 kb on + strand, within MPMX19_06723 at 299.536 kb on + strand, within MPMX19_06723 at 299.761 kb on + strand, within MPMX19_06723 at 299.830 kb on + strand, within MPMX19_06723 at 300.157 kb on + strand, within MPMX19_06723 at 300.202 kb on + strand, within MPMX19_06723 at 300.202 kb on + strand, within MPMX19_06723 at 300.220 kb on + strand, within MPMX19_06723 at 300.373 kb on + strand, within MPMX19_06723 at 300.667 kb on + strand at 300.667 kb on + strand at 300.787 kb on + strand at 300.787 kb on + strand at 300.787 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 297,250 + -3.0 297,250 + +0.5 297,251 - -1.1 297,365 + -1.4 297,366 + -0.1 297,366 + +0.1 297,366 + -1.1 297,366 + -0.1 297,366 + -1.0 297,366 + -0.9 297,366 + -1.0 297,366 + +0.1 297,366 + +0.9 297,366 + +2.3 297,366 + +0.7 297,366 + -0.2 297,366 + -1.7 297,366 + -0.7 297,366 + -1.2 297,366 + +0.5 297,366 + +0.5 297,366 + +1.1 297,366 + -1.8 297,366 + -0.1 297,366 + -0.5 297,366 + -0.7 297,366 + +1.8 297,366 + +2.5 297,366 + -0.1 297,366 + +0.1 297,366 + -0.0 297,366 + -1.6 297,366 + +0.7 297,366 + -0.4 297,366 + -1.3 297,366 + -1.5 297,366 + -0.3 297,366 + -0.9 297,366 + +0.5 297,366 + +2.1 297,366 + -0.4 297,366 + -0.6 297,366 + +1.0 297,366 + -1.5 297,366 + -3.0 297,366 + +0.6 297,366 + -1.7 297,366 + -0.8 297,366 + -1.6 297,366 + -0.4 297,366 + -0.3 297,366 + -0.3 297,366 + -0.4 297,366 + -2.6 297,366 + -1.2 297,366 + -0.7 297,366 + -0.6 297,366 + -0.5 297,366 + -1.1 297,366 + +0.2 297,366 + -1.6 297,366 + -0.8 297,366 + -0.6 297,367 - +0.8 297,367 - -0.3 297,367 - -0.9 297,510 + -1.1 297,655 + -0.4 297,748 + -2.3 297,763 + -1.1 297,763 + -1.6 297,763 + -1.1 297,898 + MPMX19_06723 0.13 -2.2 297,898 + MPMX19_06723 0.13 -0.7 298,834 + MPMX19_06723 0.40 -0.5 298,834 + MPMX19_06723 0.40 -0.6 298,834 + MPMX19_06723 0.40 +0.3 299,032 + MPMX19_06723 0.45 +0.1 299,032 + MPMX19_06723 0.45 +0.7 299,032 + MPMX19_06723 0.45 -0.7 299,068 + MPMX19_06723 0.46 -0.0 299,068 + MPMX19_06723 0.46 +0.7 299,167 + MPMX19_06723 0.49 -0.4 299,167 + MPMX19_06723 0.49 -1.7 299,167 + MPMX19_06723 0.49 +0.7 299,260 + MPMX19_06723 0.52 -0.3 299,260 + MPMX19_06723 0.52 -2.3 299,278 + MPMX19_06723 0.53 -0.3 299,317 + MPMX19_06723 0.54 +0.7 299,536 + MPMX19_06723 0.60 +1.1 299,761 + MPMX19_06723 0.67 -0.9 299,830 + MPMX19_06723 0.69 -0.1 300,157 + MPMX19_06723 0.78 -0.7 300,202 + MPMX19_06723 0.79 -1.8 300,202 + MPMX19_06723 0.79 +1.1 300,220 + MPMX19_06723 0.80 +1.1 300,373 + MPMX19_06723 0.84 -0.7 300,667 + -0.5 300,667 + +2.1 300,787 + +0.5 300,787 + -0.5 300,787 + -0.9
Or see this region's nucleotide sequence