Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06668 and MPMX19_06669 are separated by 182 nucleotides MPMX19_06669 and MPMX19_06670 are separated by 450 nucleotides
MPMX19_06668: MPMX19_06668 - 2-deoxystreptamine glucosyltransferase, at 228,855 to 230,084
_06668
MPMX19_06669: MPMX19_06669 - hypothetical protein, at 230,267 to 231,907
_06669
MPMX19_06670: MPMX19_06670 - hypothetical protein, at 232,358 to 233,767
_06670
Position (kb) 230
231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 229.660 kb on + strand, within MPMX19_06668 at 229.660 kb on + strand, within MPMX19_06668 at 229.660 kb on + strand, within MPMX19_06668 at 229.660 kb on + strand, within MPMX19_06668 at 229.660 kb on + strand, within MPMX19_06668 at 229.661 kb on - strand, within MPMX19_06668 at 229.661 kb on - strand, within MPMX19_06668 at 229.661 kb on - strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.678 kb on + strand, within MPMX19_06668 at 229.679 kb on - strand, within MPMX19_06668 at 229.679 kb on - strand, within MPMX19_06668 at 229.679 kb on - strand, within MPMX19_06668 at 229.679 kb on - strand, within MPMX19_06668 at 229.679 kb on - strand, within MPMX19_06668 at 229.679 kb on - strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.720 kb on + strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.721 kb on - strand, within MPMX19_06668 at 229.780 kb on + strand, within MPMX19_06668 at 229.780 kb on + strand, within MPMX19_06668 at 229.781 kb on - strand, within MPMX19_06668 at 229.781 kb on - strand, within MPMX19_06668 at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.059 kb on + strand at 230.060 kb on - strand at 230.060 kb on - strand at 230.060 kb on - strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.271 kb on + strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.272 kb on - strand at 230.387 kb on + strand at 230.387 kb on + strand at 230.387 kb on + strand at 230.387 kb on + strand at 230.387 kb on + strand at 230.387 kb on + strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.388 kb on - strand at 230.591 kb on + strand, within MPMX19_06669 at 230.591 kb on + strand, within MPMX19_06669 at 230.732 kb on + strand, within MPMX19_06669 at 230.732 kb on + strand, within MPMX19_06669 at 230.732 kb on + strand, within MPMX19_06669 at 230.732 kb on + strand, within MPMX19_06669 at 230.733 kb on - strand, within MPMX19_06669 at 230.733 kb on - strand, within MPMX19_06669 at 230.733 kb on - strand, within MPMX19_06669 at 230.733 kb on - strand, within MPMX19_06669 at 230.837 kb on + strand, within MPMX19_06669 at 230.837 kb on + strand, within MPMX19_06669 at 230.838 kb on - strand, within MPMX19_06669 at 230.838 kb on - strand, within MPMX19_06669 at 230.838 kb on - strand, within MPMX19_06669 at 230.838 kb on - strand, within MPMX19_06669 at 230.999 kb on + strand, within MPMX19_06669 at 230.999 kb on + strand, within MPMX19_06669 at 230.999 kb on + strand, within MPMX19_06669 at 230.999 kb on + strand, within MPMX19_06669 at 230.999 kb on + strand, within MPMX19_06669 at 230.999 kb on + strand, within MPMX19_06669 at 230.999 kb on + strand, within MPMX19_06669 at 231.000 kb on - strand, within MPMX19_06669 at 231.000 kb on - strand, within MPMX19_06669 at 231.000 kb on - strand, within MPMX19_06669 at 231.000 kb on - strand, within MPMX19_06669 at 231.000 kb on - strand, within MPMX19_06669 at 231.101 kb on + strand, within MPMX19_06669 at 231.101 kb on + strand, within MPMX19_06669 at 231.102 kb on - strand, within MPMX19_06669 at 231.102 kb on - strand, within MPMX19_06669 at 231.102 kb on - strand, within MPMX19_06669 at 231.143 kb on + strand, within MPMX19_06669 at 231.143 kb on + strand, within MPMX19_06669 at 231.143 kb on + strand, within MPMX19_06669 at 231.143 kb on + strand, within MPMX19_06669 at 231.143 kb on + strand, within MPMX19_06669 at 231.375 kb on - strand, within MPMX19_06669 at 231.375 kb on - strand, within MPMX19_06669 at 231.906 kb on - strand at 232.026 kb on + strand at 232.026 kb on + strand at 232.026 kb on + strand at 232.027 kb on - strand at 232.028 kb on + strand at 232.028 kb on + strand at 232.028 kb on + strand at 232.028 kb on + strand at 232.028 kb on + strand at 232.028 kb on + strand at 232.028 kb on + strand at 232.028 kb on + strand at 232.028 kb on + strand at 232.028 kb on + strand at 232.028 kb on + strand at 232.029 kb on - strand at 232.029 kb on - strand at 232.029 kb on - strand at 232.092 kb on + strand at 232.092 kb on + strand at 232.093 kb on - strand at 232.108 kb on + strand at 232.109 kb on - strand at 232.109 kb on - strand at 232.109 kb on - strand at 232.109 kb on - strand at 232.170 kb on + strand at 232.170 kb on + strand at 232.170 kb on + strand at 232.170 kb on + strand at 232.170 kb on + strand at 232.170 kb on + strand at 232.170 kb on + strand at 232.170 kb on + strand at 232.171 kb on - strand at 232.171 kb on - strand at 232.171 kb on - strand at 232.171 kb on - strand at 232.171 kb on - strand at 232.171 kb on - strand at 232.171 kb on - strand at 232.171 kb on - strand at 232.171 kb on - strand at 232.171 kb on - strand at 232.171 kb on - strand at 232.171 kb on - strand at 232.171 kb on - strand at 232.171 kb on - strand at 232.171 kb on - strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.173 kb on - strand at 232.173 kb on - strand at 232.173 kb on - strand at 232.173 kb on - strand at 232.173 kb on - strand at 232.173 kb on - strand at 232.173 kb on - strand at 232.173 kb on - strand at 232.270 kb on + strand at 232.271 kb on - strand at 232.271 kb on - strand at 232.754 kb on + strand, within MPMX19_06670 at 232.754 kb on + strand, within MPMX19_06670 at 232.755 kb on - strand, within MPMX19_06670 at 232.755 kb on - strand, within MPMX19_06670 at 232.775 kb on + strand, within MPMX19_06670 at 232.775 kb on + strand, within MPMX19_06670 at 232.775 kb on + strand, within MPMX19_06670 at 232.775 kb on + strand, within MPMX19_06670 at 232.775 kb on + strand, within MPMX19_06670 at 232.776 kb on - strand, within MPMX19_06670
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 229,660 + MPMX19_06668 0.65 -0.3 229,660 + MPMX19_06668 0.65 +0.2 229,660 + MPMX19_06668 0.65 -0.7 229,660 + MPMX19_06668 0.65 -0.5 229,660 + MPMX19_06668 0.65 -0.7 229,661 - MPMX19_06668 0.66 +0.1 229,661 - MPMX19_06668 0.66 -2.4 229,661 - MPMX19_06668 0.66 +0.7 229,678 + MPMX19_06668 0.67 +2.1 229,678 + MPMX19_06668 0.67 +0.8 229,678 + MPMX19_06668 0.67 -0.8 229,678 + MPMX19_06668 0.67 -0.2 229,678 + MPMX19_06668 0.67 +0.7 229,678 + MPMX19_06668 0.67 +0.2 229,678 + MPMX19_06668 0.67 +0.1 229,678 + MPMX19_06668 0.67 +0.3 229,678 + MPMX19_06668 0.67 -1.6 229,678 + MPMX19_06668 0.67 -0.8 229,678 + MPMX19_06668 0.67 -0.5 229,679 - MPMX19_06668 0.67 +0.2 229,679 - MPMX19_06668 0.67 -0.7 229,679 - MPMX19_06668 0.67 -0.3 229,679 - MPMX19_06668 0.67 +0.1 229,679 - MPMX19_06668 0.67 -0.0 229,679 - MPMX19_06668 0.67 -0.9 229,720 + MPMX19_06668 0.70 +0.5 229,720 + MPMX19_06668 0.70 +0.4 229,720 + MPMX19_06668 0.70 +0.3 229,720 + MPMX19_06668 0.70 +0.5 229,720 + MPMX19_06668 0.70 -0.7 229,720 + MPMX19_06668 0.70 +0.3 229,720 + MPMX19_06668 0.70 -0.7 229,720 + MPMX19_06668 0.70 -2.1 229,720 + MPMX19_06668 0.70 -1.7 229,721 - MPMX19_06668 0.70 +0.2 229,721 - MPMX19_06668 0.70 -1.9 229,721 - MPMX19_06668 0.70 +1.2 229,721 - MPMX19_06668 0.70 -1.3 229,721 - MPMX19_06668 0.70 -0.1 229,721 - MPMX19_06668 0.70 -0.8 229,721 - MPMX19_06668 0.70 -0.4 229,721 - MPMX19_06668 0.70 -1.5 229,721 - MPMX19_06668 0.70 -1.1 229,721 - MPMX19_06668 0.70 -2.9 229,721 - MPMX19_06668 0.70 +0.8 229,721 - MPMX19_06668 0.70 +0.7 229,721 - MPMX19_06668 0.70 -1.5 229,721 - MPMX19_06668 0.70 -2.3 229,721 - MPMX19_06668 0.70 +0.1 229,780 + MPMX19_06668 0.75 +0.4 229,780 + MPMX19_06668 0.75 -1.5 229,781 - MPMX19_06668 0.75 +0.6 229,781 - MPMX19_06668 0.75 -0.3 230,059 + +0.7 230,059 + +0.9 230,059 + -0.7 230,059 + +0.5 230,059 + -0.1 230,059 + -1.1 230,059 + -0.9 230,059 + -1.4 230,059 + +0.5 230,059 + -1.5 230,059 + -0.1 230,059 + -1.0 230,060 - +0.1 230,060 - -0.9 230,060 - -0.9 230,271 + -0.5 230,271 + -0.4 230,271 + -1.4 230,271 + -1.0 230,271 + -0.3 230,271 + -1.6 230,271 + -0.9 230,271 + -0.3 230,271 + +0.3 230,271 + +0.3 230,271 + -0.3 230,272 - -0.2 230,272 - -1.6 230,272 - -0.4 230,272 - -1.1 230,272 - -0.3 230,272 - +0.3 230,272 - -1.4 230,272 - -0.5 230,272 - -0.1 230,387 + -2.5 230,387 + -0.3 230,387 + +1.2 230,387 + +0.2 230,387 + -1.3 230,387 + -1.1 230,388 - -1.0 230,388 - +0.1 230,388 - +1.8 230,388 - -1.8 230,388 - -0.3 230,388 - -0.5 230,388 - -1.7 230,388 - -1.0 230,388 - +0.1 230,388 - -1.2 230,591 + MPMX19_06669 0.20 -1.3 230,591 + MPMX19_06669 0.20 -1.1 230,732 + MPMX19_06669 0.28 +0.2 230,732 + MPMX19_06669 0.28 -0.6 230,732 + MPMX19_06669 0.28 -0.5 230,732 + MPMX19_06669 0.28 -1.1 230,733 - MPMX19_06669 0.28 +0.6 230,733 - MPMX19_06669 0.28 -0.6 230,733 - MPMX19_06669 0.28 -1.1 230,733 - MPMX19_06669 0.28 -0.7 230,837 + MPMX19_06669 0.35 +0.1 230,837 + MPMX19_06669 0.35 +0.2 230,838 - MPMX19_06669 0.35 -1.1 230,838 - MPMX19_06669 0.35 -2.4 230,838 - MPMX19_06669 0.35 +0.1 230,838 - MPMX19_06669 0.35 -0.6 230,999 + MPMX19_06669 0.45 -1.3 230,999 + MPMX19_06669 0.45 -0.0 230,999 + MPMX19_06669 0.45 -0.4 230,999 + MPMX19_06669 0.45 -0.8 230,999 + MPMX19_06669 0.45 -0.1 230,999 + MPMX19_06669 0.45 -0.1 230,999 + MPMX19_06669 0.45 -1.1 231,000 - MPMX19_06669 0.45 +0.3 231,000 - MPMX19_06669 0.45 -1.1 231,000 - MPMX19_06669 0.45 -0.5 231,000 - MPMX19_06669 0.45 -0.5 231,000 - MPMX19_06669 0.45 -1.2 231,101 + MPMX19_06669 0.51 -1.2 231,101 + MPMX19_06669 0.51 -1.4 231,102 - MPMX19_06669 0.51 -0.8 231,102 - MPMX19_06669 0.51 -1.5 231,102 - MPMX19_06669 0.51 +1.3 231,143 + MPMX19_06669 0.53 -1.1 231,143 + MPMX19_06669 0.53 +0.1 231,143 + MPMX19_06669 0.53 +0.5 231,143 + MPMX19_06669 0.53 +0.3 231,143 + MPMX19_06669 0.53 -0.7 231,375 - MPMX19_06669 0.68 -0.3 231,375 - MPMX19_06669 0.68 -2.8 231,906 - +1.2 232,026 + -0.5 232,026 + -1.4 232,026 + -0.9 232,027 - -0.9 232,028 + -1.4 232,028 + -1.3 232,028 + -1.6 232,028 + -0.6 232,028 + -0.3 232,028 + +0.5 232,028 + +0.8 232,028 + +0.3 232,028 + -0.6 232,028 + -0.3 232,028 + -0.1 232,029 - -0.5 232,029 - -1.8 232,029 - -0.3 232,092 + -0.3 232,092 + -0.5 232,093 - +0.8 232,108 + -0.7 232,109 - -1.7 232,109 - -1.4 232,109 - -0.5 232,109 - -0.6 232,170 + -1.0 232,170 + -1.1 232,170 + +0.1 232,170 + -1.3 232,170 + -1.6 232,170 + +0.5 232,170 + +0.7 232,170 + -0.5 232,171 - -1.4 232,171 - -0.3 232,171 - -0.5 232,171 - -0.7 232,171 - -1.1 232,171 - -0.2 232,171 - -2.3 232,171 - -1.0 232,171 - -1.1 232,171 - -0.4 232,171 - +0.1 232,171 - -1.1 232,171 - +0.1 232,171 - -1.2 232,171 - -0.9 232,172 + -0.3 232,172 + -1.0 232,172 + -2.3 232,172 + +1.3 232,172 + -1.1 232,172 + -0.5 232,172 + -0.8 232,172 + +0.1 232,172 + -0.2 232,172 + -0.9 232,172 + -0.4 232,172 + -0.7 232,172 + -1.4 232,173 - -0.4 232,173 - +0.8 232,173 - +0.5 232,173 - -0.7 232,173 - -1.2 232,173 - -0.9 232,173 - -2.0 232,173 - -0.4 232,270 + -0.9 232,271 - -2.8 232,271 - -0.3 232,754 + MPMX19_06670 0.28 -0.9 232,754 + MPMX19_06670 0.28 +0.2 232,755 - MPMX19_06670 0.28 -0.6 232,755 - MPMX19_06670 0.28 -3.5 232,775 + MPMX19_06670 0.30 -0.0 232,775 + MPMX19_06670 0.30 -0.7 232,775 + MPMX19_06670 0.30 -1.4 232,775 + MPMX19_06670 0.30 -0.5 232,775 + MPMX19_06670 0.30 -0.5 232,776 - MPMX19_06670 0.30 -1.6
Or see this region's nucleotide sequence