Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06531

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06530 and MPMX19_06531 are separated by 260 nucleotidesMPMX19_06531 and MPMX19_06532 are separated by 35 nucleotides MPMX19_06530: MPMX19_06530 - hypothetical protein, at 316,644 to 318,299 _06530 MPMX19_06531: MPMX19_06531 - O-acetyl-L-homoserine sulfhydrylase, at 318,560 to 319,855 _06531 MPMX19_06532: MPMX19_06532 - Validamycin A dioxygenase, at 319,891 to 320,952 _06532 Position (kb) 318 319 320Strain fitness (log2 ratio) -2 -1 0 1 2 3at 317.609 kb on - strand, within MPMX19_06530at 317.609 kb on - strand, within MPMX19_06530at 317.609 kb on - strand, within MPMX19_06530at 317.894 kb on + strand, within MPMX19_06530at 317.894 kb on + strand, within MPMX19_06530at 317.894 kb on + strand, within MPMX19_06530at 317.894 kb on + strand, within MPMX19_06530at 317.894 kb on + strand, within MPMX19_06530at 317.894 kb on + strand, within MPMX19_06530at 318.097 kb on + strand, within MPMX19_06530at 318.097 kb on + strand, within MPMX19_06530at 318.097 kb on + strand, within MPMX19_06530at 318.097 kb on + strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.098 kb on - strand, within MPMX19_06530at 318.228 kb on + strandat 318.366 kb on + strandat 318.437 kb on + strandat 318.561 kb on + strandat 318.562 kb on - strandat 318.562 kb on - strandat 318.636 kb on + strandat 318.636 kb on + strandat 318.636 kb on + strandat 318.636 kb on + strandat 318.636 kb on + strandat 318.636 kb on + strandat 318.747 kb on + strand, within MPMX19_06531at 318.747 kb on + strand, within MPMX19_06531at 318.747 kb on + strand, within MPMX19_06531at 318.747 kb on + strand, within MPMX19_06531at 318.825 kb on + strand, within MPMX19_06531at 318.825 kb on + strand, within MPMX19_06531at 318.825 kb on + strand, within MPMX19_06531at 318.826 kb on - strand, within MPMX19_06531at 318.840 kb on + strand, within MPMX19_06531at 318.840 kb on + strand, within MPMX19_06531at 318.841 kb on - strand, within MPMX19_06531at 318.841 kb on - strand, within MPMX19_06531at 318.841 kb on - strand, within MPMX19_06531at 318.841 kb on - strand, within MPMX19_06531at 318.841 kb on - strand, within MPMX19_06531at 318.922 kb on - strand, within MPMX19_06531at 318.933 kb on - strand, within MPMX19_06531at 318.933 kb on - strand, within MPMX19_06531at 318.933 kb on - strand, within MPMX19_06531at 318.933 kb on - strand, within MPMX19_06531at 319.066 kb on - strand, within MPMX19_06531at 319.066 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.396 kb on - strand, within MPMX19_06531at 319.396 kb on - strand, within MPMX19_06531at 319.396 kb on - strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.575 kb on + strand, within MPMX19_06531at 319.575 kb on + strand, within MPMX19_06531at 319.683 kb on + strand, within MPMX19_06531at 319.683 kb on + strand, within MPMX19_06531at 319.683 kb on + strand, within MPMX19_06531at 319.683 kb on + strand, within MPMX19_06531at 319.683 kb on + strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.920 kb on - strandat 319.989 kb on - strandat 319.989 kb on - strandat 319.989 kb on - strandat 319.989 kb on - strandat 320.159 kb on + strand, within MPMX19_06532at 320.160 kb on - strand, within MPMX19_06532at 320.307 kb on + strand, within MPMX19_06532at 320.307 kb on + strand, within MPMX19_06532at 320.308 kb on - strand, within MPMX19_06532at 320.687 kb on + strand, within MPMX19_06532at 320.688 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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317,609 - MPMX19_06530 0.58 -1.1
317,609 - MPMX19_06530 0.58 -1.3
317,609 - MPMX19_06530 0.58 -1.8
317,894 + MPMX19_06530 0.75 +0.3
317,894 + MPMX19_06530 0.75 +0.3
317,894 + MPMX19_06530 0.75 +1.1
317,894 + MPMX19_06530 0.75 -1.1
317,894 + MPMX19_06530 0.75 +1.3
317,894 + MPMX19_06530 0.75 +0.8
318,097 + MPMX19_06530 0.88 -0.7
318,097 + MPMX19_06530 0.88 +0.2
318,097 + MPMX19_06530 0.88 +0.1
318,097 + MPMX19_06530 0.88 +0.1
318,098 - MPMX19_06530 0.88 +0.4
318,098 - MPMX19_06530 0.88 -1.2
318,098 - MPMX19_06530 0.88 -0.3
318,098 - MPMX19_06530 0.88 +0.1
318,098 - MPMX19_06530 0.88 +0.4
318,098 - MPMX19_06530 0.88 -1.3
318,098 - MPMX19_06530 0.88 -1.1
318,098 - MPMX19_06530 0.88 -0.7
318,228 + -1.4
318,366 + +2.8
318,437 + +0.0
318,561 + +1.0
318,562 - +0.4
318,562 - +0.4
318,636 + +0.3
318,636 + -0.3
318,636 + +2.3
318,636 + -0.6
318,636 + +1.1
318,636 + +0.9
318,747 + MPMX19_06531 0.14 -0.6
318,747 + MPMX19_06531 0.14 -2.1
318,747 + MPMX19_06531 0.14 -1.1
318,747 + MPMX19_06531 0.14 +0.0
318,825 + MPMX19_06531 0.20 +0.7
318,825 + MPMX19_06531 0.20 -2.3
318,825 + MPMX19_06531 0.20 -0.3
318,826 - MPMX19_06531 0.21 +0.1
318,840 + MPMX19_06531 0.22 +0.1
318,840 + MPMX19_06531 0.22 -0.3
318,841 - MPMX19_06531 0.22 +1.4
318,841 - MPMX19_06531 0.22 +0.6
318,841 - MPMX19_06531 0.22 -1.1
318,841 - MPMX19_06531 0.22 -0.1
318,841 - MPMX19_06531 0.22 -0.6
318,922 - MPMX19_06531 0.28 -0.6
318,933 - MPMX19_06531 0.29 -0.2
318,933 - MPMX19_06531 0.29 +1.9
318,933 - MPMX19_06531 0.29 -1.2
318,933 - MPMX19_06531 0.29 -0.7
319,066 - MPMX19_06531 0.39 -0.9
319,066 - MPMX19_06531 0.39 +0.1
319,117 - MPMX19_06531 0.43 +0.3
319,117 - MPMX19_06531 0.43 +0.7
319,117 - MPMX19_06531 0.43 -0.5
319,117 - MPMX19_06531 0.43 +2.3
319,117 - MPMX19_06531 0.43 -2.3
319,117 - MPMX19_06531 0.43 -0.3
319,117 - MPMX19_06531 0.43 -1.6
319,117 - MPMX19_06531 0.43 -0.1
319,117 - MPMX19_06531 0.43 +1.3
319,117 - MPMX19_06531 0.43 +0.1
319,117 - MPMX19_06531 0.43 +0.4
319,228 - MPMX19_06531 0.52 -1.7
319,228 - MPMX19_06531 0.52 -0.7
319,228 - MPMX19_06531 0.52 -0.6
319,228 - MPMX19_06531 0.52 -0.2
319,228 - MPMX19_06531 0.52 +0.9
319,228 - MPMX19_06531 0.52 -0.8
319,228 - MPMX19_06531 0.52 -0.5
319,228 - MPMX19_06531 0.52 +2.1
319,396 - MPMX19_06531 0.65 -0.7
319,396 - MPMX19_06531 0.65 -1.2
319,396 - MPMX19_06531 0.65 -2.1
319,398 + MPMX19_06531 0.65 -0.4
319,398 + MPMX19_06531 0.65 +0.4
319,398 + MPMX19_06531 0.65 +0.7
319,398 + MPMX19_06531 0.65 +0.3
319,398 + MPMX19_06531 0.65 +1.6
319,398 + MPMX19_06531 0.65 +0.0
319,398 + MPMX19_06531 0.65 -1.2
319,398 + MPMX19_06531 0.65 -1.4
319,399 - MPMX19_06531 0.65 -0.6
319,399 - MPMX19_06531 0.65 -0.8
319,399 - MPMX19_06531 0.65 +0.1
319,399 - MPMX19_06531 0.65 +0.5
319,399 - MPMX19_06531 0.65 +1.1
319,399 - MPMX19_06531 0.65 -1.1
319,399 - MPMX19_06531 0.65 +0.6
319,399 - MPMX19_06531 0.65 +1.8
319,399 - MPMX19_06531 0.65 -1.7
319,399 - MPMX19_06531 0.65 -1.9
319,575 + MPMX19_06531 0.78 -1.3
319,575 + MPMX19_06531 0.78 +0.0
319,683 + MPMX19_06531 0.87 -0.6
319,683 + MPMX19_06531 0.87 +0.3
319,683 + MPMX19_06531 0.87 +0.1
319,683 + MPMX19_06531 0.87 +0.6
319,683 + MPMX19_06531 0.87 -2.0
319,684 - MPMX19_06531 0.87 +1.5
319,684 - MPMX19_06531 0.87 +0.1
319,684 - MPMX19_06531 0.87 +0.3
319,684 - MPMX19_06531 0.87 +0.7
319,684 - MPMX19_06531 0.87 +1.2
319,684 - MPMX19_06531 0.87 -1.0
319,684 - MPMX19_06531 0.87 -1.2
319,684 - MPMX19_06531 0.87 -1.6
319,920 - -1.9
319,989 - -0.8
319,989 - -0.3
319,989 - -1.4
319,989 - -0.3
320,159 + MPMX19_06532 0.25 -1.2
320,160 - MPMX19_06532 0.25 -0.5
320,307 + MPMX19_06532 0.39 +0.7
320,307 + MPMX19_06532 0.39 -1.2
320,308 - MPMX19_06532 0.39 -1.9
320,687 + MPMX19_06532 0.75 -0.9
320,688 - MPMX19_06532 0.75 -1.1
320,817 - MPMX19_06532 0.87 +0.7
320,817 - MPMX19_06532 0.87 -0.3
320,817 - MPMX19_06532 0.87 -0.3
320,817 - MPMX19_06532 0.87 -0.4
320,817 - MPMX19_06532 0.87 +0.1
320,817 - MPMX19_06532 0.87 -1.1
320,817 - MPMX19_06532 0.87 -1.1
320,817 - MPMX19_06532 0.87 -1.2
320,817 - MPMX19_06532 0.87 +0.9
320,817 - MPMX19_06532 0.87 +0.3
320,817 - MPMX19_06532 0.87 +0.1
320,817 - MPMX19_06532 0.87 +0.6
320,817 - MPMX19_06532 0.87 -0.2
320,817 - MPMX19_06532 0.87 -0.8

Or see this region's nucleotide sequence