Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06505 and MPMX19_06506 overlap by 4 nucleotides MPMX19_06506 and MPMX19_06507 are separated by 29 nucleotides MPMX19_06507 and MPMX19_06508 are separated by 61 nucleotides
MPMX19_06505: MPMX19_06505 - hypothetical protein, at 289,004 to 290,521
_06505
MPMX19_06506: MPMX19_06506 - hypothetical protein, at 290,518 to 290,865
_06506
MPMX19_06507: MPMX19_06507 - hypothetical protein, at 290,895 to 291,938
_06507
MPMX19_06508: MPMX19_06508 - Nitrilotriacetate monooxygenase component A, at 292,000 to 293,319
_06508
Position (kb) 290
291
292 Strain fitness (log2 ratio) -2
-1
0
1
2 at 290.686 kb on + strand, within MPMX19_06506 at 290.686 kb on + strand, within MPMX19_06506 at 290.686 kb on + strand, within MPMX19_06506 at 290.686 kb on + strand, within MPMX19_06506 at 290.686 kb on + strand, within MPMX19_06506 at 290.686 kb on + strand, within MPMX19_06506 at 290.762 kb on - strand, within MPMX19_06506 at 291.126 kb on + strand, within MPMX19_06507 at 291.126 kb on + strand, within MPMX19_06507 at 291.126 kb on + strand, within MPMX19_06507 at 291.126 kb on + strand, within MPMX19_06507 at 291.127 kb on - strand, within MPMX19_06507 at 291.127 kb on - strand, within MPMX19_06507 at 291.127 kb on - strand, within MPMX19_06507 at 291.127 kb on - strand, within MPMX19_06507 at 291.384 kb on + strand, within MPMX19_06507 at 291.384 kb on + strand, within MPMX19_06507 at 291.384 kb on + strand, within MPMX19_06507 at 291.384 kb on + strand, within MPMX19_06507 at 291.517 kb on - strand, within MPMX19_06507 at 291.517 kb on - strand, within MPMX19_06507 at 291.517 kb on - strand, within MPMX19_06507 at 291.517 kb on - strand, within MPMX19_06507 at 291.699 kb on + strand, within MPMX19_06507 at 291.699 kb on + strand, within MPMX19_06507 at 291.699 kb on + strand, within MPMX19_06507 at 291.700 kb on - strand, within MPMX19_06507 at 291.700 kb on - strand, within MPMX19_06507 at 291.700 kb on - strand, within MPMX19_06507 at 291.700 kb on - strand, within MPMX19_06507 at 291.700 kb on - strand, within MPMX19_06507 at 291.700 kb on - strand, within MPMX19_06507 at 291.700 kb on - strand, within MPMX19_06507 at 291.700 kb on - strand, within MPMX19_06507 at 291.700 kb on - strand, within MPMX19_06507 at 291.700 kb on - strand, within MPMX19_06507 at 291.700 kb on - strand, within MPMX19_06507 at 291.832 kb on - strand, within MPMX19_06507 at 291.832 kb on - strand, within MPMX19_06507 at 291.832 kb on - strand, within MPMX19_06507 at 291.832 kb on - strand, within MPMX19_06507 at 291.961 kb on + strand at 291.961 kb on + strand at 291.961 kb on + strand at 292.021 kb on - strand at 292.178 kb on - strand, within MPMX19_06508 at 292.178 kb on - strand, within MPMX19_06508 at 292.450 kb on + strand, within MPMX19_06508 at 292.816 kb on - strand, within MPMX19_06508 at 292.927 kb on + strand, within MPMX19_06508 at 292.927 kb on + strand, within MPMX19_06508 at 292.927 kb on + strand, within MPMX19_06508 at 292.927 kb on + strand, within MPMX19_06508 at 292.927 kb on + strand, within MPMX19_06508
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 290,686 + MPMX19_06506 0.48 -0.8 290,686 + MPMX19_06506 0.48 -0.3 290,686 + MPMX19_06506 0.48 +0.7 290,686 + MPMX19_06506 0.48 -2.3 290,686 + MPMX19_06506 0.48 +0.8 290,686 + MPMX19_06506 0.48 -0.9 290,762 - MPMX19_06506 0.70 -1.1 291,126 + MPMX19_06507 0.22 +1.4 291,126 + MPMX19_06507 0.22 +1.4 291,126 + MPMX19_06507 0.22 -0.4 291,126 + MPMX19_06507 0.22 +0.2 291,127 - MPMX19_06507 0.22 +0.3 291,127 - MPMX19_06507 0.22 -1.0 291,127 - MPMX19_06507 0.22 -1.1 291,127 - MPMX19_06507 0.22 -0.9 291,384 + MPMX19_06507 0.47 -1.1 291,384 + MPMX19_06507 0.47 -0.2 291,384 + MPMX19_06507 0.47 +0.1 291,384 + MPMX19_06507 0.47 +0.7 291,517 - MPMX19_06507 0.60 -0.2 291,517 - MPMX19_06507 0.60 +0.1 291,517 - MPMX19_06507 0.60 +0.2 291,517 - MPMX19_06507 0.60 +0.1 291,699 + MPMX19_06507 0.77 -0.7 291,699 + MPMX19_06507 0.77 -0.6 291,699 + MPMX19_06507 0.77 -1.1 291,700 - MPMX19_06507 0.77 +1.1 291,700 - MPMX19_06507 0.77 -0.6 291,700 - MPMX19_06507 0.77 +2.6 291,700 - MPMX19_06507 0.77 +1.0 291,700 - MPMX19_06507 0.77 -0.6 291,700 - MPMX19_06507 0.77 -0.1 291,700 - MPMX19_06507 0.77 +0.9 291,700 - MPMX19_06507 0.77 -0.4 291,700 - MPMX19_06507 0.77 -0.7 291,700 - MPMX19_06507 0.77 -0.5 291,700 - MPMX19_06507 0.77 -1.8 291,832 - MPMX19_06507 0.90 -0.0 291,832 - MPMX19_06507 0.90 -0.8 291,832 - MPMX19_06507 0.90 +0.7 291,832 - MPMX19_06507 0.90 -1.3 291,961 + -0.7 291,961 + -1.4 291,961 + -0.6 292,021 - +0.6 292,178 - MPMX19_06508 0.13 -0.8 292,178 - MPMX19_06508 0.13 -0.7 292,450 + MPMX19_06508 0.34 -0.6 292,816 - MPMX19_06508 0.62 -1.4 292,927 + MPMX19_06508 0.70 -0.7 292,927 + MPMX19_06508 0.70 -0.7 292,927 + MPMX19_06508 0.70 -0.9 292,927 + MPMX19_06508 0.70 +1.0 292,927 + MPMX19_06508 0.70 -2.1
Or see this region's nucleotide sequence