Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06498

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06496 and MPMX19_06497 are separated by 30 nucleotidesMPMX19_06497 and MPMX19_06498 are separated by 14 nucleotidesMPMX19_06498 and MPMX19_06499 are separated by 7 nucleotides MPMX19_06496: MPMX19_06496 - FAD-dependent urate hydroxylase, at 278,988 to 280,448 _06496 MPMX19_06497: MPMX19_06497 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 280,479 to 281,207 _06497 MPMX19_06498: MPMX19_06498 - Lipopolysaccharide export system ATP-binding protein LptB, at 281,222 to 282,109 _06498 MPMX19_06499: MPMX19_06499 - hypothetical protein, at 282,117 to 283,955 _06499 Position (kb) 281 282 283Strain fitness (log2 ratio) -2 -1 0 1 2at 280.413 kb on + strandat 280.413 kb on + strandat 280.413 kb on + strandat 280.413 kb on + strandat 280.414 kb on - strandat 280.504 kb on + strandat 280.505 kb on - strandat 280.505 kb on - strandat 280.583 kb on - strand, within MPMX19_06497at 280.583 kb on - strand, within MPMX19_06497at 280.583 kb on - strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.892 kb on - strand, within MPMX19_06497at 281.100 kb on + strand, within MPMX19_06497at 281.164 kb on + strandat 281.164 kb on + strandat 281.164 kb on + strandat 281.165 kb on - strandat 281.165 kb on - strandat 281.165 kb on - strandat 281.297 kb on - strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.308 kb on - strandat 281.589 kb on + strand, within MPMX19_06498at 281.589 kb on + strand, within MPMX19_06498at 281.589 kb on + strand, within MPMX19_06498at 281.589 kb on + strand, within MPMX19_06498at 281.589 kb on + strand, within MPMX19_06498at 281.589 kb on + strand, within MPMX19_06498at 281.589 kb on + strand, within MPMX19_06498at 281.590 kb on - strand, within MPMX19_06498at 281.590 kb on - strand, within MPMX19_06498at 281.590 kb on - strand, within MPMX19_06498at 282.178 kb on + strandat 282.179 kb on - strandat 282.193 kb on + strandat 282.193 kb on + strandat 282.340 kb on + strand, within MPMX19_06499at 282.340 kb on + strand, within MPMX19_06499at 282.340 kb on + strand, within MPMX19_06499at 282.340 kb on + strand, within MPMX19_06499at 282.340 kb on + strand, within MPMX19_06499at 282.340 kb on + strand, within MPMX19_06499at 282.340 kb on + strand, within MPMX19_06499at 282.340 kb on + strand, within MPMX19_06499at 282.340 kb on + strand, within MPMX19_06499at 282.340 kb on + strand, within MPMX19_06499at 282.340 kb on + strand, within MPMX19_06499at 282.340 kb on + strand, within MPMX19_06499at 282.340 kb on + strand, within MPMX19_06499at 282.340 kb on + strand, within MPMX19_06499at 282.341 kb on - strand, within MPMX19_06499at 282.341 kb on - strand, within MPMX19_06499at 282.341 kb on - strand, within MPMX19_06499at 282.341 kb on - strand, within MPMX19_06499at 282.341 kb on - strand, within MPMX19_06499at 282.341 kb on - strand, within MPMX19_06499at 282.341 kb on - strand, within MPMX19_06499at 282.347 kb on - strand, within MPMX19_06499at 282.347 kb on - strand, within MPMX19_06499at 282.347 kb on - strand, within MPMX19_06499at 282.415 kb on + strand, within MPMX19_06499at 282.415 kb on + strand, within MPMX19_06499at 282.436 kb on + strand, within MPMX19_06499at 282.553 kb on + strand, within MPMX19_06499at 282.553 kb on + strand, within MPMX19_06499at 282.553 kb on + strand, within MPMX19_06499at 282.553 kb on + strand, within MPMX19_06499at 282.553 kb on + strand, within MPMX19_06499at 282.554 kb on - strand, within MPMX19_06499at 282.554 kb on - strand, within MPMX19_06499at 282.554 kb on - strand, within MPMX19_06499at 282.700 kb on + strand, within MPMX19_06499at 282.700 kb on + strand, within MPMX19_06499at 282.700 kb on + strand, within MPMX19_06499at 282.700 kb on + strand, within MPMX19_06499at 282.700 kb on + strand, within MPMX19_06499at 282.700 kb on + strand, within MPMX19_06499at 282.700 kb on + strand, within MPMX19_06499at 282.700 kb on + strand, within MPMX19_06499at 282.701 kb on - strand, within MPMX19_06499at 282.701 kb on - strand, within MPMX19_06499at 282.701 kb on - strand, within MPMX19_06499at 282.701 kb on - strand, within MPMX19_06499at 282.701 kb on - strand, within MPMX19_06499at 282.701 kb on - strand, within MPMX19_06499at 282.701 kb on - strand, within MPMX19_06499at 282.701 kb on - strand, within MPMX19_06499at 282.701 kb on - strand, within MPMX19_06499at 282.701 kb on - strand, within MPMX19_06499at 282.701 kb on - strand, within MPMX19_06499at 282.728 kb on - strand, within MPMX19_06499at 282.826 kb on + strand, within MPMX19_06499at 282.826 kb on + strand, within MPMX19_06499at 282.826 kb on + strand, within MPMX19_06499at 282.826 kb on + strand, within MPMX19_06499at 282.826 kb on + strand, within MPMX19_06499at 282.826 kb on + strand, within MPMX19_06499at 282.826 kb on + strand, within MPMX19_06499at 282.826 kb on + strand, within MPMX19_06499at 282.826 kb on + strand, within MPMX19_06499at 282.826 kb on + strand, within MPMX19_06499at 282.826 kb on + strand, within MPMX19_06499at 282.827 kb on - strand, within MPMX19_06499at 282.827 kb on - strand, within MPMX19_06499at 282.827 kb on - strand, within MPMX19_06499at 282.827 kb on - strand, within MPMX19_06499at 282.827 kb on - strand, within MPMX19_06499at 282.827 kb on - strand, within MPMX19_06499at 282.916 kb on + strand, within MPMX19_06499at 282.916 kb on + strand, within MPMX19_06499at 282.916 kb on + strand, within MPMX19_06499at 282.917 kb on - strand, within MPMX19_06499at 282.917 kb on - strand, within MPMX19_06499at 282.917 kb on - strand, within MPMX19_06499at 282.917 kb on - strand, within MPMX19_06499at 282.917 kb on - strand, within MPMX19_06499at 282.917 kb on - strand, within MPMX19_06499at 282.949 kb on + strand, within MPMX19_06499at 282.949 kb on + strand, within MPMX19_06499at 282.950 kb on - strand, within MPMX19_06499at 282.950 kb on - strand, within MPMX19_06499at 282.950 kb on - strand, within MPMX19_06499at 282.950 kb on - strand, within MPMX19_06499at 282.950 kb on - strand, within MPMX19_06499

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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280,413 + -0.2
280,413 + -0.3
280,413 + +0.6
280,413 + -1.4
280,414 - +1.8
280,504 + -0.9
280,505 - -0.7
280,505 - -0.9
280,583 - MPMX19_06497 0.14 +0.1
280,583 - MPMX19_06497 0.14 +0.7
280,583 - MPMX19_06497 0.14 -0.1
280,855 + MPMX19_06497 0.52 -0.1
280,855 + MPMX19_06497 0.52 -0.7
280,855 + MPMX19_06497 0.52 +0.3
280,855 + MPMX19_06497 0.52 -0.6
280,855 + MPMX19_06497 0.52 +0.1
280,855 + MPMX19_06497 0.52 -0.1
280,891 + MPMX19_06497 0.57 -1.8
280,891 + MPMX19_06497 0.57 -0.6
280,891 + MPMX19_06497 0.57 -1.6
280,891 + MPMX19_06497 0.57 +1.3
280,891 + MPMX19_06497 0.57 +0.8
280,891 + MPMX19_06497 0.57 +0.4
280,892 - MPMX19_06497 0.57 +0.8
281,100 + MPMX19_06497 0.85 +2.3
281,164 + -0.7
281,164 + -2.2
281,164 + +0.2
281,165 - +1.3
281,165 - -0.4
281,165 - -1.1
281,297 - +0.0
281,307 + -0.6
281,307 + -2.5
281,307 + -0.9
281,307 + +1.0
281,307 + -0.3
281,307 + -1.1
281,308 - -0.8
281,589 + MPMX19_06498 0.41 -0.3
281,589 + MPMX19_06498 0.41 +0.7
281,589 + MPMX19_06498 0.41 -0.1
281,589 + MPMX19_06498 0.41 +0.3
281,589 + MPMX19_06498 0.41 +0.7
281,589 + MPMX19_06498 0.41 +0.3
281,589 + MPMX19_06498 0.41 -0.9
281,590 - MPMX19_06498 0.41 +0.1
281,590 - MPMX19_06498 0.41 +0.1
281,590 - MPMX19_06498 0.41 -0.8
282,178 + +0.7
282,179 - -1.7
282,193 + -0.1
282,193 + +0.8
282,340 + MPMX19_06499 0.12 +0.4
282,340 + MPMX19_06499 0.12 +0.7
282,340 + MPMX19_06499 0.12 -0.6
282,340 + MPMX19_06499 0.12 +0.6
282,340 + MPMX19_06499 0.12 -0.3
282,340 + MPMX19_06499 0.12 +0.7
282,340 + MPMX19_06499 0.12 -0.2
282,340 + MPMX19_06499 0.12 +1.5
282,340 + MPMX19_06499 0.12 -0.7
282,340 + MPMX19_06499 0.12 -2.4
282,340 + MPMX19_06499 0.12 -0.3
282,340 + MPMX19_06499 0.12 +0.7
282,340 + MPMX19_06499 0.12 +1.0
282,340 + MPMX19_06499 0.12 -1.7
282,341 - MPMX19_06499 0.12 -1.7
282,341 - MPMX19_06499 0.12 -0.1
282,341 - MPMX19_06499 0.12 -0.6
282,341 - MPMX19_06499 0.12 +1.7
282,341 - MPMX19_06499 0.12 -1.1
282,341 - MPMX19_06499 0.12 -0.9
282,341 - MPMX19_06499 0.12 -0.4
282,347 - MPMX19_06499 0.13 -0.4
282,347 - MPMX19_06499 0.13 +0.4
282,347 - MPMX19_06499 0.13 -0.1
282,415 + MPMX19_06499 0.16 -1.1
282,415 + MPMX19_06499 0.16 -0.7
282,436 + MPMX19_06499 0.17 -0.5
282,553 + MPMX19_06499 0.24 -0.4
282,553 + MPMX19_06499 0.24 +0.4
282,553 + MPMX19_06499 0.24 +0.1
282,553 + MPMX19_06499 0.24 -0.2
282,553 + MPMX19_06499 0.24 +0.3
282,554 - MPMX19_06499 0.24 -2.0
282,554 - MPMX19_06499 0.24 +0.1
282,554 - MPMX19_06499 0.24 -1.7
282,700 + MPMX19_06499 0.32 +0.5
282,700 + MPMX19_06499 0.32 -1.6
282,700 + MPMX19_06499 0.32 -0.2
282,700 + MPMX19_06499 0.32 -0.7
282,700 + MPMX19_06499 0.32 -0.5
282,700 + MPMX19_06499 0.32 +0.4
282,700 + MPMX19_06499 0.32 -2.1
282,700 + MPMX19_06499 0.32 -0.1
282,701 - MPMX19_06499 0.32 -1.1
282,701 - MPMX19_06499 0.32 +0.8
282,701 - MPMX19_06499 0.32 +0.3
282,701 - MPMX19_06499 0.32 -0.6
282,701 - MPMX19_06499 0.32 -0.1
282,701 - MPMX19_06499 0.32 -0.8
282,701 - MPMX19_06499 0.32 -1.2
282,701 - MPMX19_06499 0.32 +0.7
282,701 - MPMX19_06499 0.32 +0.0
282,701 - MPMX19_06499 0.32 -0.4
282,701 - MPMX19_06499 0.32 -0.6
282,728 - MPMX19_06499 0.33 +0.1
282,826 + MPMX19_06499 0.39 +0.8
282,826 + MPMX19_06499 0.39 -0.7
282,826 + MPMX19_06499 0.39 -0.4
282,826 + MPMX19_06499 0.39 +0.3
282,826 + MPMX19_06499 0.39 +0.3
282,826 + MPMX19_06499 0.39 -1.9
282,826 + MPMX19_06499 0.39 -1.7
282,826 + MPMX19_06499 0.39 -0.3
282,826 + MPMX19_06499 0.39 +0.4
282,826 + MPMX19_06499 0.39 -0.8
282,826 + MPMX19_06499 0.39 -0.7
282,827 - MPMX19_06499 0.39 -1.6
282,827 - MPMX19_06499 0.39 +1.7
282,827 - MPMX19_06499 0.39 -0.8
282,827 - MPMX19_06499 0.39 +0.9
282,827 - MPMX19_06499 0.39 -0.1
282,827 - MPMX19_06499 0.39 -1.9
282,916 + MPMX19_06499 0.43 +0.5
282,916 + MPMX19_06499 0.43 +0.4
282,916 + MPMX19_06499 0.43 +0.3
282,917 - MPMX19_06499 0.44 +0.4
282,917 - MPMX19_06499 0.44 -1.4
282,917 - MPMX19_06499 0.44 -1.0
282,917 - MPMX19_06499 0.44 -0.2
282,917 - MPMX19_06499 0.44 +0.9
282,917 - MPMX19_06499 0.44 -1.8
282,949 + MPMX19_06499 0.45 -1.5
282,949 + MPMX19_06499 0.45 -0.4
282,950 - MPMX19_06499 0.45 -0.1
282,950 - MPMX19_06499 0.45 +0.3
282,950 - MPMX19_06499 0.45 -1.1
282,950 - MPMX19_06499 0.45 -0.4
282,950 - MPMX19_06499 0.45 -1.2

Or see this region's nucleotide sequence