Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06464

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06463 and MPMX19_06464 overlap by 4 nucleotidesMPMX19_06464 and MPMX19_06465 are separated by 0 nucleotidesMPMX19_06465 and MPMX19_06466 overlap by 4 nucleotides MPMX19_06463: MPMX19_06463 - Hydroxycarboxylate dehydrogenase B, at 246,515 to 247,579 _06463 MPMX19_06464: MPMX19_06464 - Tryptophan synthase beta chain, at 247,576 to 248,856 _06464 MPMX19_06465: MPMX19_06465 - hypothetical protein, at 248,857 to 249,768 _06465 MPMX19_06466: MPMX19_06466 - Vitamin B12 import ATP-binding protein BtuD, at 249,765 to 250,601 _06466 Position (kb) 247 248 249Strain fitness (log2 ratio) -2 -1 0 1 2at 246.611 kb on + strandat 246.611 kb on + strandat 246.611 kb on + strandat 246.611 kb on + strandat 246.611 kb on + strandat 246.611 kb on + strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.871 kb on - strand, within MPMX19_06463at 246.877 kb on + strand, within MPMX19_06463at 246.877 kb on + strand, within MPMX19_06463at 246.877 kb on + strand, within MPMX19_06463at 246.878 kb on - strand, within MPMX19_06463at 246.878 kb on - strand, within MPMX19_06463at 246.923 kb on + strand, within MPMX19_06463at 246.923 kb on + strand, within MPMX19_06463at 246.923 kb on + strand, within MPMX19_06463at 246.923 kb on + strand, within MPMX19_06463at 247.059 kb on + strand, within MPMX19_06463at 247.059 kb on + strand, within MPMX19_06463at 247.059 kb on + strand, within MPMX19_06463at 247.060 kb on - strand, within MPMX19_06463at 247.060 kb on - strand, within MPMX19_06463at 247.204 kb on - strand, within MPMX19_06463at 247.204 kb on - strand, within MPMX19_06463at 247.204 kb on - strand, within MPMX19_06463at 247.204 kb on - strand, within MPMX19_06463at 247.222 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463at 247.604 kb on + strandat 247.604 kb on + strandat 247.605 kb on - strandat 247.605 kb on - strandat 247.640 kb on - strandat 247.640 kb on - strandat 247.640 kb on - strandat 247.655 kb on + strandat 247.733 kb on + strand, within MPMX19_06464at 247.733 kb on + strand, within MPMX19_06464at 247.734 kb on - strand, within MPMX19_06464at 247.742 kb on + strand, within MPMX19_06464at 247.742 kb on + strand, within MPMX19_06464at 247.742 kb on + strand, within MPMX19_06464at 248.753 kb on + strandat 248.753 kb on + strandat 248.859 kb on - strandat 248.859 kb on - strandat 248.886 kb on + strandat 248.975 kb on + strand, within MPMX19_06465at 248.975 kb on + strand, within MPMX19_06465at 248.975 kb on + strand, within MPMX19_06465at 249.143 kb on + strand, within MPMX19_06465at 249.144 kb on - strand, within MPMX19_06465at 249.144 kb on - strand, within MPMX19_06465at 249.144 kb on - strand, within MPMX19_06465at 249.144 kb on - strand, within MPMX19_06465at 249.144 kb on - strand, within MPMX19_06465at 249.164 kb on + strand, within MPMX19_06465at 249.165 kb on - strand, within MPMX19_06465at 249.165 kb on - strand, within MPMX19_06465at 249.165 kb on - strand, within MPMX19_06465at 249.428 kb on + strand, within MPMX19_06465at 249.429 kb on - strand, within MPMX19_06465at 249.429 kb on - strand, within MPMX19_06465at 249.477 kb on + strand, within MPMX19_06465at 249.695 kb on + strandat 249.696 kb on - strandat 249.696 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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246,611 + -0.7
246,611 + +0.7
246,611 + -0.7
246,611 + +0.1
246,611 + -1.4
246,611 + -0.7
246,612 - +0.1
246,612 - -1.1
246,612 - +0.4
246,612 - -0.7
246,612 - +2.3
246,612 - +0.4
246,612 - -0.8
246,612 - -0.1
246,871 - MPMX19_06463 0.33 -0.7
246,877 + MPMX19_06463 0.34 +0.0
246,877 + MPMX19_06463 0.34 -1.3
246,877 + MPMX19_06463 0.34 -1.0
246,878 - MPMX19_06463 0.34 -0.2
246,878 - MPMX19_06463 0.34 -0.8
246,923 + MPMX19_06463 0.38 +0.6
246,923 + MPMX19_06463 0.38 +1.4
246,923 + MPMX19_06463 0.38 -0.6
246,923 + MPMX19_06463 0.38 -0.7
247,059 + MPMX19_06463 0.51 +0.6
247,059 + MPMX19_06463 0.51 +0.2
247,059 + MPMX19_06463 0.51 -0.2
247,060 - MPMX19_06463 0.51 -2.1
247,060 - MPMX19_06463 0.51 -1.1
247,204 - MPMX19_06463 0.65 -1.1
247,204 - MPMX19_06463 0.65 -2.6
247,204 - MPMX19_06463 0.65 +0.6
247,204 - MPMX19_06463 0.65 +0.3
247,222 + MPMX19_06463 0.66 +0.2
247,435 + MPMX19_06463 0.86 +0.0
247,435 + MPMX19_06463 0.86 -2.6
247,435 + MPMX19_06463 0.86 -2.5
247,435 + MPMX19_06463 0.86 +1.9
247,435 + MPMX19_06463 0.86 -1.0
247,436 - MPMX19_06463 0.86 +1.9
247,436 - MPMX19_06463 0.86 -0.3
247,436 - MPMX19_06463 0.86 -0.3
247,436 - MPMX19_06463 0.86 -0.7
247,436 - MPMX19_06463 0.86 -0.1
247,604 + +1.0
247,604 + +0.3
247,605 - +0.2
247,605 - +0.4
247,640 - -1.4
247,640 - -0.7
247,640 - -2.4
247,655 + -0.1
247,733 + MPMX19_06464 0.12 -1.2
247,733 + MPMX19_06464 0.12 -0.3
247,734 - MPMX19_06464 0.12 -0.1
247,742 + MPMX19_06464 0.13 -0.6
247,742 + MPMX19_06464 0.13 -0.3
247,742 + MPMX19_06464 0.13 +1.1
248,753 + +0.8
248,753 + -1.1
248,859 - +0.8
248,859 - +0.4
248,886 + -1.0
248,975 + MPMX19_06465 0.13 -0.1
248,975 + MPMX19_06465 0.13 -1.8
248,975 + MPMX19_06465 0.13 +1.0
249,143 + MPMX19_06465 0.31 +1.0
249,144 - MPMX19_06465 0.31 -0.1
249,144 - MPMX19_06465 0.31 -0.4
249,144 - MPMX19_06465 0.31 -0.1
249,144 - MPMX19_06465 0.31 -0.1
249,144 - MPMX19_06465 0.31 +0.7
249,164 + MPMX19_06465 0.34 -0.6
249,165 - MPMX19_06465 0.34 -0.9
249,165 - MPMX19_06465 0.34 -1.4
249,165 - MPMX19_06465 0.34 +0.4
249,428 + MPMX19_06465 0.63 -0.8
249,429 - MPMX19_06465 0.63 -0.8
249,429 - MPMX19_06465 0.63 -0.3
249,477 + MPMX19_06465 0.68 -0.1
249,695 + -0.7
249,696 - +0.0
249,696 - +1.0

Or see this region's nucleotide sequence