Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06463

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06462 and MPMX19_06463 are separated by 36 nucleotidesMPMX19_06463 and MPMX19_06464 overlap by 4 nucleotides MPMX19_06462: MPMX19_06462 - Hydroxypyruvate reductase, at 245,531 to 246,478 _06462 MPMX19_06463: MPMX19_06463 - Hydroxycarboxylate dehydrogenase B, at 246,515 to 247,579 _06463 MPMX19_06464: MPMX19_06464 - Tryptophan synthase beta chain, at 247,576 to 248,856 _06464 Position (kb) 246 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 245.515 kb on + strandat 245.515 kb on + strandat 245.515 kb on + strandat 245.515 kb on + strandat 245.515 kb on + strandat 245.515 kb on + strandat 245.515 kb on + strandat 245.516 kb on - strandat 245.516 kb on - strandat 245.516 kb on - strandat 245.516 kb on - strandat 245.516 kb on - strandat 245.516 kb on - strandat 245.516 kb on - strandat 245.516 kb on - strandat 245.536 kb on - strandat 245.679 kb on + strand, within MPMX19_06462at 245.700 kb on + strand, within MPMX19_06462at 245.700 kb on + strand, within MPMX19_06462at 245.701 kb on - strand, within MPMX19_06462at 245.701 kb on - strand, within MPMX19_06462at 245.701 kb on - strand, within MPMX19_06462at 245.701 kb on - strand, within MPMX19_06462at 245.701 kb on - strand, within MPMX19_06462at 245.701 kb on - strand, within MPMX19_06462at 245.841 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.872 kb on + strand, within MPMX19_06462at 245.872 kb on + strand, within MPMX19_06462at 245.872 kb on + strand, within MPMX19_06462at 245.872 kb on + strand, within MPMX19_06462at 245.872 kb on + strand, within MPMX19_06462at 245.873 kb on - strand, within MPMX19_06462at 245.873 kb on - strand, within MPMX19_06462at 245.873 kb on - strand, within MPMX19_06462at 245.873 kb on - strand, within MPMX19_06462at 246.008 kb on + strand, within MPMX19_06462at 246.008 kb on + strand, within MPMX19_06462at 246.009 kb on - strand, within MPMX19_06462at 246.009 kb on - strand, within MPMX19_06462at 246.009 kb on - strand, within MPMX19_06462at 246.611 kb on + strandat 246.611 kb on + strandat 246.611 kb on + strandat 246.611 kb on + strandat 246.611 kb on + strandat 246.611 kb on + strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.871 kb on - strand, within MPMX19_06463at 246.877 kb on + strand, within MPMX19_06463at 246.877 kb on + strand, within MPMX19_06463at 246.877 kb on + strand, within MPMX19_06463at 246.878 kb on - strand, within MPMX19_06463at 246.878 kb on - strand, within MPMX19_06463at 246.923 kb on + strand, within MPMX19_06463at 246.923 kb on + strand, within MPMX19_06463at 246.923 kb on + strand, within MPMX19_06463at 246.923 kb on + strand, within MPMX19_06463at 247.059 kb on + strand, within MPMX19_06463at 247.059 kb on + strand, within MPMX19_06463at 247.059 kb on + strand, within MPMX19_06463at 247.060 kb on - strand, within MPMX19_06463at 247.060 kb on - strand, within MPMX19_06463at 247.204 kb on - strand, within MPMX19_06463at 247.204 kb on - strand, within MPMX19_06463at 247.204 kb on - strand, within MPMX19_06463at 247.204 kb on - strand, within MPMX19_06463at 247.222 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463at 247.604 kb on + strandat 247.604 kb on + strandat 247.605 kb on - strandat 247.605 kb on - strandat 247.640 kb on - strandat 247.640 kb on - strandat 247.640 kb on - strandat 247.655 kb on + strandat 247.733 kb on + strand, within MPMX19_06464at 247.733 kb on + strand, within MPMX19_06464at 247.734 kb on - strand, within MPMX19_06464at 247.742 kb on + strand, within MPMX19_06464at 247.742 kb on + strand, within MPMX19_06464at 247.742 kb on + strand, within MPMX19_06464

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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245,515 + -0.3
245,515 + +0.7
245,515 + -0.6
245,515 + -0.7
245,515 + -0.0
245,515 + +0.1
245,515 + -3.0
245,516 - -2.2
245,516 - +0.4
245,516 - -1.1
245,516 - -0.1
245,516 - -0.6
245,516 - -0.1
245,516 - +0.7
245,516 - -0.6
245,536 - -0.2
245,679 + MPMX19_06462 0.16 -1.2
245,700 + MPMX19_06462 0.18 +0.8
245,700 + MPMX19_06462 0.18 +0.1
245,701 - MPMX19_06462 0.18 +1.3
245,701 - MPMX19_06462 0.18 -0.4
245,701 - MPMX19_06462 0.18 -0.9
245,701 - MPMX19_06462 0.18 -0.9
245,701 - MPMX19_06462 0.18 +1.3
245,701 - MPMX19_06462 0.18 -0.9
245,841 + MPMX19_06462 0.33 -0.9
245,870 + MPMX19_06462 0.36 +0.3
245,870 + MPMX19_06462 0.36 -2.2
245,870 + MPMX19_06462 0.36 -0.6
245,870 + MPMX19_06462 0.36 -2.1
245,870 + MPMX19_06462 0.36 -0.7
245,870 + MPMX19_06462 0.36 -1.1
245,870 + MPMX19_06462 0.36 +0.1
245,870 + MPMX19_06462 0.36 -0.7
245,870 + MPMX19_06462 0.36 -0.5
245,870 + MPMX19_06462 0.36 -0.7
245,870 + MPMX19_06462 0.36 +0.0
245,870 + MPMX19_06462 0.36 -0.3
245,870 + MPMX19_06462 0.36 -1.7
245,870 + MPMX19_06462 0.36 +0.3
245,870 + MPMX19_06462 0.36 -2.3
245,871 - MPMX19_06462 0.36 +0.1
245,871 - MPMX19_06462 0.36 -0.3
245,871 - MPMX19_06462 0.36 -0.2
245,871 - MPMX19_06462 0.36 -0.1
245,871 - MPMX19_06462 0.36 -1.7
245,871 - MPMX19_06462 0.36 -0.7
245,871 - MPMX19_06462 0.36 +1.3
245,871 - MPMX19_06462 0.36 -0.8
245,871 - MPMX19_06462 0.36 -0.7
245,871 - MPMX19_06462 0.36 +1.7
245,871 - MPMX19_06462 0.36 -0.3
245,871 - MPMX19_06462 0.36 -0.9
245,871 - MPMX19_06462 0.36 -1.2
245,871 - MPMX19_06462 0.36 -1.7
245,872 + MPMX19_06462 0.36 -1.3
245,872 + MPMX19_06462 0.36 +0.1
245,872 + MPMX19_06462 0.36 -1.3
245,872 + MPMX19_06462 0.36 -0.7
245,872 + MPMX19_06462 0.36 -2.2
245,873 - MPMX19_06462 0.36 -1.1
245,873 - MPMX19_06462 0.36 -1.1
245,873 - MPMX19_06462 0.36 -0.2
245,873 - MPMX19_06462 0.36 -0.4
246,008 + MPMX19_06462 0.50 -1.0
246,008 + MPMX19_06462 0.50 -0.4
246,009 - MPMX19_06462 0.50 +0.4
246,009 - MPMX19_06462 0.50 -1.2
246,009 - MPMX19_06462 0.50 -0.7
246,611 + -0.7
246,611 + +0.7
246,611 + -0.7
246,611 + +0.1
246,611 + -1.4
246,611 + -0.7
246,612 - +0.1
246,612 - -1.1
246,612 - +0.4
246,612 - -0.7
246,612 - +2.3
246,612 - +0.4
246,612 - -0.8
246,612 - -0.1
246,871 - MPMX19_06463 0.33 -0.7
246,877 + MPMX19_06463 0.34 +0.0
246,877 + MPMX19_06463 0.34 -1.3
246,877 + MPMX19_06463 0.34 -1.0
246,878 - MPMX19_06463 0.34 -0.2
246,878 - MPMX19_06463 0.34 -0.8
246,923 + MPMX19_06463 0.38 +0.6
246,923 + MPMX19_06463 0.38 +1.4
246,923 + MPMX19_06463 0.38 -0.6
246,923 + MPMX19_06463 0.38 -0.7
247,059 + MPMX19_06463 0.51 +0.6
247,059 + MPMX19_06463 0.51 +0.2
247,059 + MPMX19_06463 0.51 -0.2
247,060 - MPMX19_06463 0.51 -2.1
247,060 - MPMX19_06463 0.51 -1.1
247,204 - MPMX19_06463 0.65 -1.1
247,204 - MPMX19_06463 0.65 -2.6
247,204 - MPMX19_06463 0.65 +0.6
247,204 - MPMX19_06463 0.65 +0.3
247,222 + MPMX19_06463 0.66 +0.2
247,435 + MPMX19_06463 0.86 +0.0
247,435 + MPMX19_06463 0.86 -2.6
247,435 + MPMX19_06463 0.86 -2.5
247,435 + MPMX19_06463 0.86 +1.9
247,435 + MPMX19_06463 0.86 -1.0
247,436 - MPMX19_06463 0.86 +1.9
247,436 - MPMX19_06463 0.86 -0.3
247,436 - MPMX19_06463 0.86 -0.3
247,436 - MPMX19_06463 0.86 -0.7
247,436 - MPMX19_06463 0.86 -0.1
247,604 + +1.0
247,604 + +0.3
247,605 - +0.2
247,605 - +0.4
247,640 - -1.4
247,640 - -0.7
247,640 - -2.4
247,655 + -0.1
247,733 + MPMX19_06464 0.12 -1.2
247,733 + MPMX19_06464 0.12 -0.3
247,734 - MPMX19_06464 0.12 -0.1
247,742 + MPMX19_06464 0.13 -0.6
247,742 + MPMX19_06464 0.13 -0.3
247,742 + MPMX19_06464 0.13 +1.1

Or see this region's nucleotide sequence