Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06454 and MPMX19_06455 are separated by 295 nucleotides MPMX19_06455 and MPMX19_06456 are separated by 57 nucleotides MPMX19_06456 and MPMX19_06457 are separated by 432 nucleotides
MPMX19_06454: MPMX19_06454 - hypothetical protein, at 228,605 to 230,290
_06454
MPMX19_06455: MPMX19_06455 - Tyrosine recombinase XerC, at 230,586 to 231,743
_06455
MPMX19_06456: MPMX19_06456 - hypothetical protein, at 231,801 to 232,160
_06456
MPMX19_06457: MPMX19_06457 - hypothetical protein, at 232,593 to 234,149
_06457
Position (kb) 230
231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 229.603 kb on + strand, within MPMX19_06454 at 229.604 kb on - strand, within MPMX19_06454 at 229.604 kb on - strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.664 kb on + strand, within MPMX19_06454 at 229.664 kb on + strand, within MPMX19_06454 at 229.664 kb on + strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.723 kb on + strand, within MPMX19_06454 at 229.723 kb on + strand, within MPMX19_06454 at 229.723 kb on + strand, within MPMX19_06454 at 229.724 kb on - strand, within MPMX19_06454 at 229.738 kb on + strand, within MPMX19_06454 at 229.739 kb on - strand, within MPMX19_06454 at 229.853 kb on - strand, within MPMX19_06454 at 229.853 kb on - strand, within MPMX19_06454 at 229.974 kb on + strand, within MPMX19_06454 at 229.975 kb on - strand, within MPMX19_06454 at 229.975 kb on - strand, within MPMX19_06454 at 230.061 kb on - strand, within MPMX19_06454 at 230.091 kb on + strand, within MPMX19_06454 at 230.091 kb on + strand, within MPMX19_06454 at 230.092 kb on - strand, within MPMX19_06454 at 230.110 kb on - strand, within MPMX19_06454 at 230.110 kb on - strand, within MPMX19_06454 at 230.176 kb on - strand at 230.176 kb on - strand at 230.176 kb on - strand at 230.382 kb on - strand at 230.382 kb on - strand at 230.382 kb on - strand at 230.405 kb on + strand at 230.406 kb on - strand at 230.800 kb on - strand, within MPMX19_06455 at 230.823 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 231.366 kb on + strand, within MPMX19_06455 at 231.366 kb on + strand, within MPMX19_06455 at 231.367 kb on - strand, within MPMX19_06455 at 231.367 kb on - strand, within MPMX19_06455 at 231.669 kb on + strand at 231.669 kb on + strand at 231.669 kb on + strand at 231.669 kb on + strand at 231.669 kb on + strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.763 kb on + strand at 231.802 kb on + strand at 231.802 kb on + strand at 231.803 kb on - strand at 231.803 kb on - strand at 231.803 kb on - strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.815 kb on - strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.833 kb on - strand at 231.833 kb on - strand at 231.833 kb on - strand at 231.898 kb on + strand, within MPMX19_06456 at 231.898 kb on + strand, within MPMX19_06456 at 231.899 kb on - strand, within MPMX19_06456 at 232.170 kb on + strand at 232.171 kb on - strand at 232.209 kb on + strand at 232.209 kb on + strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.338 kb on - strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.426 kb on + strand at 232.426 kb on + strand at 232.426 kb on + strand at 232.427 kb on - strand at 232.427 kb on - strand at 232.427 kb on - strand at 232.465 kb on + strand at 232.487 kb on + strand at 232.487 kb on + strand at 232.506 kb on + strand at 232.506 kb on + strand at 232.506 kb on + strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.508 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.604 kb on - strand at 232.604 kb on - strand at 232.640 kb on + strand at 232.640 kb on + strand at 232.640 kb on + strand at 232.641 kb on - strand at 232.641 kb on - strand at 232.641 kb on - strand at 232.652 kb on + strand at 232.653 kb on - strand at 232.653 kb on - strand at 232.653 kb on - strand at 232.686 kb on + strand at 232.686 kb on + strand at 232.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 229,603 + MPMX19_06454 0.59 -1.4 229,604 - MPMX19_06454 0.59 +2.3 229,604 - MPMX19_06454 0.59 +0.1 229,644 + MPMX19_06454 0.62 -1.1 229,644 + MPMX19_06454 0.62 -0.4 229,644 + MPMX19_06454 0.62 -0.7 229,644 + MPMX19_06454 0.62 -1.7 229,644 + MPMX19_06454 0.62 -0.6 229,644 + MPMX19_06454 0.62 +0.9 229,644 + MPMX19_06454 0.62 -0.7 229,644 + MPMX19_06454 0.62 -0.2 229,644 + MPMX19_06454 0.62 -0.6 229,644 + MPMX19_06454 0.62 +0.8 229,644 + MPMX19_06454 0.62 +0.8 229,644 + MPMX19_06454 0.62 +0.3 229,644 + MPMX19_06454 0.62 -1.2 229,644 + MPMX19_06454 0.62 -1.1 229,645 - MPMX19_06454 0.62 -0.3 229,645 - MPMX19_06454 0.62 -0.5 229,645 - MPMX19_06454 0.62 -1.1 229,645 - MPMX19_06454 0.62 -0.7 229,645 - MPMX19_06454 0.62 +1.4 229,645 - MPMX19_06454 0.62 -0.3 229,645 - MPMX19_06454 0.62 -0.4 229,645 - MPMX19_06454 0.62 -1.2 229,645 - MPMX19_06454 0.62 -0.3 229,645 - MPMX19_06454 0.62 +0.3 229,664 + MPMX19_06454 0.63 -0.6 229,664 + MPMX19_06454 0.63 +0.3 229,664 + MPMX19_06454 0.63 +0.9 229,665 - MPMX19_06454 0.63 +0.4 229,665 - MPMX19_06454 0.63 +0.8 229,665 - MPMX19_06454 0.63 -0.2 229,665 - MPMX19_06454 0.63 +0.3 229,723 + MPMX19_06454 0.66 -0.9 229,723 + MPMX19_06454 0.66 -0.2 229,723 + MPMX19_06454 0.66 +1.0 229,724 - MPMX19_06454 0.66 +0.5 229,738 + MPMX19_06454 0.67 -0.1 229,739 - MPMX19_06454 0.67 -1.4 229,853 - MPMX19_06454 0.74 -0.8 229,853 - MPMX19_06454 0.74 +0.3 229,974 + MPMX19_06454 0.81 -0.0 229,975 - MPMX19_06454 0.81 +0.8 229,975 - MPMX19_06454 0.81 +0.1 230,061 - MPMX19_06454 0.86 +0.2 230,091 + MPMX19_06454 0.88 +0.4 230,091 + MPMX19_06454 0.88 -1.0 230,092 - MPMX19_06454 0.88 -1.0 230,110 - MPMX19_06454 0.89 +0.4 230,110 - MPMX19_06454 0.89 -1.7 230,176 - -1.4 230,176 - +0.1 230,176 - -1.6 230,382 - -0.6 230,382 - +0.4 230,382 - -0.2 230,405 + -2.6 230,406 - -0.9 230,800 - MPMX19_06455 0.18 -0.4 230,823 + MPMX19_06455 0.20 -0.1 230,910 + MPMX19_06455 0.28 -0.3 230,910 + MPMX19_06455 0.28 -1.6 230,910 + MPMX19_06455 0.28 -1.6 230,910 + MPMX19_06455 0.28 -1.0 230,910 + MPMX19_06455 0.28 -1.2 230,910 + MPMX19_06455 0.28 -1.2 230,910 + MPMX19_06455 0.28 -0.7 230,910 + MPMX19_06455 0.28 +0.1 230,910 + MPMX19_06455 0.28 -1.0 230,911 - MPMX19_06455 0.28 -0.9 230,911 - MPMX19_06455 0.28 -0.9 230,911 - MPMX19_06455 0.28 +1.7 230,911 - MPMX19_06455 0.28 -0.1 230,911 - MPMX19_06455 0.28 -0.6 230,911 - MPMX19_06455 0.28 -0.6 230,911 - MPMX19_06455 0.28 -1.0 230,911 - MPMX19_06455 0.28 -1.2 230,911 - MPMX19_06455 0.28 +0.7 231,366 + MPMX19_06455 0.67 -1.5 231,366 + MPMX19_06455 0.67 -1.6 231,367 - MPMX19_06455 0.67 -1.3 231,367 - MPMX19_06455 0.67 -0.9 231,669 + +0.4 231,669 + +1.3 231,669 + -1.7 231,669 + -0.6 231,669 + -0.9 231,670 - -0.1 231,670 - -2.6 231,670 - -0.6 231,670 - +0.9 231,670 - -2.1 231,670 - -1.9 231,670 - +1.7 231,670 - +0.8 231,670 - +0.7 231,763 + -2.3 231,802 + +1.5 231,802 + +1.0 231,803 - +2.0 231,803 - -0.3 231,803 - -2.4 231,814 + +3.3 231,814 + -1.4 231,814 + -0.6 231,814 + -1.5 231,815 - +0.0 231,826 + -2.3 231,826 + -0.7 231,826 + -0.7 231,826 + -0.6 231,826 + -1.1 231,826 + +0.2 231,826 + -0.6 231,826 + -0.4 231,826 + -2.2 231,826 + +1.3 231,827 - -2.1 231,827 - +1.3 231,827 - -1.7 231,827 - -0.7 231,827 - -0.1 231,827 - -0.9 231,827 - +0.5 231,827 - -1.1 231,827 - -1.3 231,827 - -0.4 231,827 - +0.1 231,827 - +0.8 231,832 + +0.3 231,832 + +0.9 231,832 + +0.0 231,832 + +0.4 231,832 + -0.3 231,833 - -0.2 231,833 - -1.4 231,833 - +0.7 231,898 + MPMX19_06456 0.27 -1.0 231,898 + MPMX19_06456 0.27 -0.8 231,899 - MPMX19_06456 0.27 -0.9 232,170 + -1.2 232,171 - -2.9 232,209 + -1.0 232,209 + -0.8 232,288 + -1.0 232,288 + -1.1 232,338 - -0.7 232,387 + +0.0 232,387 + +0.1 232,387 + +1.3 232,387 + +0.3 232,387 + -0.2 232,387 + -0.7 232,387 + -0.7 232,387 + -0.6 232,388 - +0.1 232,388 - -0.7 232,388 - -1.2 232,388 - -1.3 232,388 - +0.3 232,388 - -1.7 232,388 - -0.9 232,388 - -0.7 232,388 - -0.2 232,388 - +1.4 232,388 - -1.3 232,426 + -0.8 232,426 + -0.6 232,426 + -1.4 232,427 - +0.3 232,427 - -0.2 232,427 - -0.4 232,465 + -0.5 232,487 + +0.6 232,487 + +0.7 232,506 + +0.2 232,506 + -1.3 232,506 + +1.5 232,507 - +1.3 232,507 - -1.7 232,507 - +0.2 232,507 - +0.8 232,507 - +0.4 232,507 - +0.3 232,507 - -0.5 232,507 - -2.2 232,507 - -2.1 232,508 + -1.3 232,598 + -0.8 232,598 + +1.4 232,598 + +0.8 232,604 - +0.6 232,604 - -0.9 232,640 + +0.4 232,640 + +1.3 232,640 + +0.7 232,641 - -0.7 232,641 - -1.1 232,641 - -0.8 232,652 + -0.1 232,653 - +0.2 232,653 - +0.8 232,653 - -0.1 232,686 + -0.9 232,686 + -0.5 232,687 - -1.7
Or see this region's nucleotide sequence