Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06451 and MPMX19_06452 are separated by 91 nucleotides MPMX19_06452 and MPMX19_06453 overlap by 4 nucleotides MPMX19_06453 and MPMX19_06454 overlap by 8 nucleotides
MPMX19_06451: MPMX19_06451 - hypothetical protein, at 225,187 to 226,161
_06451
MPMX19_06452: MPMX19_06452 - hypothetical protein, at 226,253 to 227,740
_06452
MPMX19_06453: MPMX19_06453 - hypothetical protein, at 227,737 to 228,612
_06453
MPMX19_06454: MPMX19_06454 - hypothetical protein, at 228,605 to 230,290
_06454
Position (kb) 226
227
228 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 225.358 kb on + strand, within MPMX19_06451 at 225.359 kb on - strand, within MPMX19_06451 at 225.359 kb on - strand, within MPMX19_06451 at 225.359 kb on - strand, within MPMX19_06451 at 225.390 kb on + strand, within MPMX19_06451 at 225.391 kb on - strand, within MPMX19_06451 at 225.391 kb on - strand, within MPMX19_06451 at 225.403 kb on + strand, within MPMX19_06451 at 225.403 kb on + strand, within MPMX19_06451 at 225.403 kb on + strand, within MPMX19_06451 at 225.403 kb on + strand, within MPMX19_06451 at 225.403 kb on + strand, within MPMX19_06451 at 225.403 kb on + strand, within MPMX19_06451 at 225.404 kb on - strand, within MPMX19_06451 at 225.408 kb on + strand, within MPMX19_06451 at 225.408 kb on + strand, within MPMX19_06451 at 225.408 kb on + strand, within MPMX19_06451 at 225.409 kb on - strand, within MPMX19_06451 at 225.409 kb on - strand, within MPMX19_06451 at 225.482 kb on + strand, within MPMX19_06451 at 225.483 kb on - strand, within MPMX19_06451 at 225.487 kb on + strand, within MPMX19_06451 at 225.487 kb on + strand, within MPMX19_06451 at 225.487 kb on + strand, within MPMX19_06451 at 225.487 kb on + strand, within MPMX19_06451 at 225.488 kb on - strand, within MPMX19_06451 at 225.488 kb on - strand, within MPMX19_06451 at 225.488 kb on - strand, within MPMX19_06451 at 225.488 kb on - strand, within MPMX19_06451 at 225.488 kb on - strand, within MPMX19_06451 at 225.496 kb on + strand, within MPMX19_06451 at 225.496 kb on + strand, within MPMX19_06451 at 225.496 kb on + strand, within MPMX19_06451 at 225.496 kb on + strand, within MPMX19_06451 at 225.496 kb on + strand, within MPMX19_06451 at 225.497 kb on - strand, within MPMX19_06451 at 225.497 kb on - strand, within MPMX19_06451 at 225.497 kb on - strand, within MPMX19_06451 at 225.497 kb on - strand, within MPMX19_06451 at 225.529 kb on - strand, within MPMX19_06451 at 225.586 kb on - strand, within MPMX19_06451 at 225.610 kb on + strand, within MPMX19_06451 at 225.610 kb on + strand, within MPMX19_06451 at 225.640 kb on + strand, within MPMX19_06451 at 225.641 kb on - strand, within MPMX19_06451 at 225.667 kb on + strand, within MPMX19_06451 at 225.667 kb on + strand, within MPMX19_06451 at 225.667 kb on + strand, within MPMX19_06451 at 225.667 kb on + strand, within MPMX19_06451 at 225.668 kb on - strand, within MPMX19_06451 at 225.668 kb on - strand, within MPMX19_06451 at 225.668 kb on - strand, within MPMX19_06451 at 225.688 kb on + strand, within MPMX19_06451 at 225.688 kb on + strand, within MPMX19_06451 at 225.688 kb on + strand, within MPMX19_06451 at 225.790 kb on + strand, within MPMX19_06451 at 225.790 kb on + strand, within MPMX19_06451 at 225.790 kb on + strand, within MPMX19_06451 at 225.790 kb on + strand, within MPMX19_06451 at 225.791 kb on - strand, within MPMX19_06451 at 225.875 kb on + strand, within MPMX19_06451 at 225.876 kb on - strand, within MPMX19_06451 at 225.876 kb on - strand, within MPMX19_06451 at 225.904 kb on + strand, within MPMX19_06451 at 225.904 kb on + strand, within MPMX19_06451 at 225.904 kb on + strand, within MPMX19_06451 at 225.904 kb on + strand, within MPMX19_06451 at 225.904 kb on + strand, within MPMX19_06451 at 225.905 kb on - strand, within MPMX19_06451 at 225.905 kb on - strand, within MPMX19_06451 at 225.905 kb on - strand, within MPMX19_06451 at 225.905 kb on - strand, within MPMX19_06451 at 225.905 kb on - strand, within MPMX19_06451 at 225.905 kb on - strand, within MPMX19_06451 at 225.905 kb on - strand, within MPMX19_06451 at 225.905 kb on - strand, within MPMX19_06451 at 225.906 kb on + strand, within MPMX19_06451 at 225.906 kb on + strand, within MPMX19_06451 at 225.907 kb on - strand, within MPMX19_06451 at 225.907 kb on - strand, within MPMX19_06451 at 225.907 kb on - strand, within MPMX19_06451 at 226.110 kb on - strand at 226.137 kb on + strand at 226.137 kb on + strand at 226.137 kb on + strand at 226.137 kb on + strand at 226.138 kb on - strand at 226.138 kb on - strand at 226.159 kb on + strand at 226.159 kb on + strand at 226.160 kb on - strand at 226.216 kb on - strand at 226.216 kb on - strand at 226.216 kb on - strand at 226.234 kb on - strand at 226.242 kb on - strand at 226.242 kb on - strand at 226.376 kb on + strand at 226.394 kb on + strand at 226.395 kb on - strand at 226.395 kb on - strand at 226.395 kb on - strand at 226.599 kb on + strand, within MPMX19_06452 at 226.599 kb on + strand, within MPMX19_06452 at 226.600 kb on - strand, within MPMX19_06452 at 226.600 kb on - strand, within MPMX19_06452 at 226.600 kb on - strand, within MPMX19_06452 at 226.600 kb on - strand, within MPMX19_06452 at 226.632 kb on + strand, within MPMX19_06452 at 226.632 kb on + strand, within MPMX19_06452 at 226.633 kb on - strand, within MPMX19_06452 at 226.667 kb on + strand, within MPMX19_06452 at 226.668 kb on - strand, within MPMX19_06452 at 226.774 kb on + strand, within MPMX19_06452 at 226.774 kb on + strand, within MPMX19_06452 at 226.775 kb on - strand, within MPMX19_06452 at 226.775 kb on - strand, within MPMX19_06452 at 226.820 kb on + strand, within MPMX19_06452 at 226.820 kb on + strand, within MPMX19_06452 at 226.821 kb on - strand, within MPMX19_06452 at 226.821 kb on - strand, within MPMX19_06452 at 226.821 kb on - strand, within MPMX19_06452 at 226.821 kb on - strand, within MPMX19_06452 at 226.821 kb on - strand, within MPMX19_06452 at 226.821 kb on - strand, within MPMX19_06452 at 227.000 kb on + strand, within MPMX19_06452 at 227.000 kb on + strand, within MPMX19_06452 at 227.000 kb on + strand, within MPMX19_06452 at 227.001 kb on - strand, within MPMX19_06452 at 227.001 kb on - strand, within MPMX19_06452 at 227.142 kb on + strand, within MPMX19_06452 at 227.142 kb on + strand, within MPMX19_06452 at 227.143 kb on - strand, within MPMX19_06452 at 227.269 kb on + strand, within MPMX19_06452 at 227.403 kb on + strand, within MPMX19_06452 at 227.403 kb on + strand, within MPMX19_06452 at 227.404 kb on - strand, within MPMX19_06452 at 227.404 kb on - strand, within MPMX19_06452 at 227.404 kb on - strand, within MPMX19_06452 at 227.404 kb on - strand, within MPMX19_06452 at 227.404 kb on - strand, within MPMX19_06452 at 227.404 kb on - strand, within MPMX19_06452 at 227.404 kb on - strand, within MPMX19_06452 at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.634 kb on + strand at 227.634 kb on + strand at 227.635 kb on - strand at 227.635 kb on - strand at 227.635 kb on - strand at 227.635 kb on - strand at 227.707 kb on + strand at 227.707 kb on + strand at 227.707 kb on + strand at 227.707 kb on + strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.728 kb on + strand at 227.728 kb on + strand at 227.728 kb on + strand at 227.728 kb on + strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 228.009 kb on + strand, within MPMX19_06453 at 228.009 kb on + strand, within MPMX19_06453 at 228.010 kb on - strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.507 kb on - strand, within MPMX19_06453 at 228.596 kb on + strand at 228.597 kb on - strand at 228.597 kb on - strand at 228.617 kb on + strand at 228.617 kb on + strand at 228.617 kb on + strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.630 kb on + strand at 228.630 kb on + strand at 228.630 kb on + strand at 228.630 kb on + strand at 228.631 kb on - strand at 228.631 kb on - strand at 228.652 kb on + strand at 228.653 kb on - strand at 228.653 kb on - strand at 228.667 kb on + strand at 228.684 kb on + strand at 228.684 kb on + strand at 228.684 kb on + strand at 228.684 kb on + strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.685 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 225,358 + MPMX19_06451 0.18 +0.1 225,359 - MPMX19_06451 0.18 -0.3 225,359 - MPMX19_06451 0.18 +1.6 225,359 - MPMX19_06451 0.18 -0.2 225,390 + MPMX19_06451 0.21 -2.6 225,391 - MPMX19_06451 0.21 -0.3 225,391 - MPMX19_06451 0.21 -2.2 225,403 + MPMX19_06451 0.22 +1.6 225,403 + MPMX19_06451 0.22 +0.9 225,403 + MPMX19_06451 0.22 +0.1 225,403 + MPMX19_06451 0.22 -1.1 225,403 + MPMX19_06451 0.22 -0.1 225,403 + MPMX19_06451 0.22 -0.6 225,404 - MPMX19_06451 0.22 -2.0 225,408 + MPMX19_06451 0.23 +0.2 225,408 + MPMX19_06451 0.23 +1.3 225,408 + MPMX19_06451 0.23 +0.3 225,409 - MPMX19_06451 0.23 -0.4 225,409 - MPMX19_06451 0.23 -0.8 225,482 + MPMX19_06451 0.30 +0.0 225,483 - MPMX19_06451 0.30 +0.1 225,487 + MPMX19_06451 0.31 +0.1 225,487 + MPMX19_06451 0.31 -1.2 225,487 + MPMX19_06451 0.31 +0.3 225,487 + MPMX19_06451 0.31 -1.4 225,488 - MPMX19_06451 0.31 -0.4 225,488 - MPMX19_06451 0.31 +0.3 225,488 - MPMX19_06451 0.31 -1.6 225,488 - MPMX19_06451 0.31 +0.4 225,488 - MPMX19_06451 0.31 -0.6 225,496 + MPMX19_06451 0.32 -0.0 225,496 + MPMX19_06451 0.32 -1.0 225,496 + MPMX19_06451 0.32 +0.3 225,496 + MPMX19_06451 0.32 -0.3 225,496 + MPMX19_06451 0.32 -0.6 225,497 - MPMX19_06451 0.32 -1.4 225,497 - MPMX19_06451 0.32 +1.0 225,497 - MPMX19_06451 0.32 -1.5 225,497 - MPMX19_06451 0.32 -1.1 225,529 - MPMX19_06451 0.35 -0.7 225,586 - MPMX19_06451 0.41 -0.1 225,610 + MPMX19_06451 0.43 +1.5 225,610 + MPMX19_06451 0.43 -1.8 225,640 + MPMX19_06451 0.46 +3.0 225,641 - MPMX19_06451 0.47 -0.2 225,667 + MPMX19_06451 0.49 -0.4 225,667 + MPMX19_06451 0.49 +0.9 225,667 + MPMX19_06451 0.49 -0.1 225,667 + MPMX19_06451 0.49 -0.6 225,668 - MPMX19_06451 0.49 -0.8 225,668 - MPMX19_06451 0.49 -0.7 225,668 - MPMX19_06451 0.49 -1.3 225,688 + MPMX19_06451 0.51 -1.0 225,688 + MPMX19_06451 0.51 -0.6 225,688 + MPMX19_06451 0.51 +2.3 225,790 + MPMX19_06451 0.62 -2.0 225,790 + MPMX19_06451 0.62 -1.2 225,790 + MPMX19_06451 0.62 -0.9 225,790 + MPMX19_06451 0.62 -1.7 225,791 - MPMX19_06451 0.62 -0.9 225,875 + MPMX19_06451 0.71 +0.0 225,876 - MPMX19_06451 0.71 -0.6 225,876 - MPMX19_06451 0.71 -1.6 225,904 + MPMX19_06451 0.74 -1.7 225,904 + MPMX19_06451 0.74 +0.3 225,904 + MPMX19_06451 0.74 -0.3 225,904 + MPMX19_06451 0.74 -0.9 225,904 + MPMX19_06451 0.74 -1.3 225,905 - MPMX19_06451 0.74 -1.3 225,905 - MPMX19_06451 0.74 -0.3 225,905 - MPMX19_06451 0.74 -0.3 225,905 - MPMX19_06451 0.74 +0.3 225,905 - MPMX19_06451 0.74 -2.4 225,905 - MPMX19_06451 0.74 -0.2 225,905 - MPMX19_06451 0.74 -0.7 225,905 - MPMX19_06451 0.74 -2.3 225,906 + MPMX19_06451 0.74 -1.6 225,906 + MPMX19_06451 0.74 -1.4 225,907 - MPMX19_06451 0.74 -0.1 225,907 - MPMX19_06451 0.74 -0.6 225,907 - MPMX19_06451 0.74 -0.0 226,110 - -1.3 226,137 + +0.3 226,137 + -2.3 226,137 + -0.1 226,137 + -1.1 226,138 - -1.1 226,138 - -2.0 226,159 + -1.7 226,159 + -0.4 226,160 - -2.3 226,216 - +0.3 226,216 - -1.6 226,216 - +1.6 226,234 - -0.5 226,242 - -1.1 226,242 - -0.9 226,376 + -0.6 226,394 + -0.3 226,395 - -1.4 226,395 - +0.0 226,395 - -0.1 226,599 + MPMX19_06452 0.23 -1.2 226,599 + MPMX19_06452 0.23 -1.1 226,600 - MPMX19_06452 0.23 -0.1 226,600 - MPMX19_06452 0.23 +0.8 226,600 - MPMX19_06452 0.23 +0.0 226,600 - MPMX19_06452 0.23 -0.9 226,632 + MPMX19_06452 0.25 -0.3 226,632 + MPMX19_06452 0.25 +1.3 226,633 - MPMX19_06452 0.26 +0.1 226,667 + MPMX19_06452 0.28 +0.9 226,668 - MPMX19_06452 0.28 -0.7 226,774 + MPMX19_06452 0.35 -0.7 226,774 + MPMX19_06452 0.35 +0.6 226,775 - MPMX19_06452 0.35 -1.0 226,775 - MPMX19_06452 0.35 -0.7 226,820 + MPMX19_06452 0.38 +0.3 226,820 + MPMX19_06452 0.38 -0.1 226,821 - MPMX19_06452 0.38 -2.3 226,821 - MPMX19_06452 0.38 -0.6 226,821 - MPMX19_06452 0.38 -1.4 226,821 - MPMX19_06452 0.38 -0.6 226,821 - MPMX19_06452 0.38 -1.2 226,821 - MPMX19_06452 0.38 -0.8 227,000 + MPMX19_06452 0.50 -0.1 227,000 + MPMX19_06452 0.50 -0.6 227,000 + MPMX19_06452 0.50 -1.4 227,001 - MPMX19_06452 0.50 -0.6 227,001 - MPMX19_06452 0.50 -0.4 227,142 + MPMX19_06452 0.60 -1.3 227,142 + MPMX19_06452 0.60 -1.8 227,143 - MPMX19_06452 0.60 +0.7 227,269 + MPMX19_06452 0.68 -1.5 227,403 + MPMX19_06452 0.77 -1.6 227,403 + MPMX19_06452 0.77 -1.2 227,404 - MPMX19_06452 0.77 -0.4 227,404 - MPMX19_06452 0.77 -1.5 227,404 - MPMX19_06452 0.77 -1.6 227,404 - MPMX19_06452 0.77 -0.7 227,404 - MPMX19_06452 0.77 +0.5 227,404 - MPMX19_06452 0.77 +1.5 227,404 - MPMX19_06452 0.77 +0.4 227,613 + +1.0 227,613 + -1.7 227,613 + +0.7 227,613 + -1.6 227,613 + +0.4 227,613 + -0.9 227,613 + -0.3 227,613 + -2.9 227,613 + -1.3 227,613 + +0.3 227,613 + -1.7 227,614 - +0.5 227,614 - -1.1 227,614 - -1.6 227,614 - -1.6 227,614 - -0.7 227,614 - -0.5 227,614 - -1.4 227,614 - +0.1 227,614 - -0.2 227,614 - -0.7 227,614 - +0.7 227,614 - +0.7 227,614 - -0.2 227,634 + -0.9 227,634 + -2.3 227,635 - -0.1 227,635 - -0.1 227,635 - -0.5 227,635 - -0.4 227,707 + -0.6 227,707 + -1.1 227,707 + -1.8 227,707 + -1.6 227,708 - -0.4 227,708 - +0.6 227,708 - -0.6 227,708 - -0.7 227,708 - -1.3 227,708 - +1.4 227,708 - -0.7 227,728 + +1.3 227,728 + -0.1 227,728 + -0.9 227,728 + -0.6 227,729 - +1.5 227,729 - -0.3 227,729 - -2.4 227,729 - -1.2 227,729 - +0.4 227,762 + +0.2 227,762 + -1.2 227,762 + -2.0 227,762 + +0.9 227,762 + -0.7 227,762 + -0.9 227,762 + -0.1 227,762 + -1.1 227,762 + +0.3 227,762 + -0.9 227,763 - -0.3 227,763 - -0.2 227,763 - -0.9 227,763 - -0.3 227,763 - -0.7 227,763 - -0.7 228,009 + MPMX19_06453 0.31 -0.3 228,009 + MPMX19_06453 0.31 -0.6 228,010 - MPMX19_06453 0.31 -1.3 228,278 + MPMX19_06453 0.62 +0.7 228,278 + MPMX19_06453 0.62 -1.7 228,278 + MPMX19_06453 0.62 -1.2 228,278 + MPMX19_06453 0.62 -2.3 228,278 + MPMX19_06453 0.62 +1.5 228,278 + MPMX19_06453 0.62 -0.7 228,278 + MPMX19_06453 0.62 +0.7 228,278 + MPMX19_06453 0.62 -0.9 228,279 - MPMX19_06453 0.62 +0.9 228,279 - MPMX19_06453 0.62 -2.1 228,279 - MPMX19_06453 0.62 +0.4 228,279 - MPMX19_06453 0.62 +0.6 228,279 - MPMX19_06453 0.62 +0.4 228,279 - MPMX19_06453 0.62 -1.3 228,279 - MPMX19_06453 0.62 -2.1 228,279 - MPMX19_06453 0.62 -0.7 228,507 - MPMX19_06453 0.88 -0.7 228,596 + -0.4 228,597 - -0.4 228,597 - -1.7 228,617 + +0.9 228,617 + +0.3 228,617 + -0.1 228,618 - -1.1 228,618 - +0.4 228,618 - -1.5 228,618 - +2.3 228,618 - +0.4 228,618 - -0.2 228,630 + +0.3 228,630 + -0.3 228,630 + +1.7 228,630 + -0.6 228,631 - -0.5 228,631 - +1.0 228,652 + -1.3 228,653 - -0.2 228,653 - -1.0 228,667 + -0.1 228,684 + -1.2 228,684 + +2.3 228,684 + -0.3 228,684 + -1.6 228,685 - -0.2 228,685 - -1.0 228,685 - -3.4 228,685 - -0.4 228,685 - +1.4
Or see this region's nucleotide sequence