Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06440

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06439 and MPMX19_06440 overlap by 4 nucleotidesMPMX19_06440 and MPMX19_06441 are separated by 473 nucleotides MPMX19_06439: MPMX19_06439 - hypothetical protein, at 213,216 to 214,691 _06439 MPMX19_06440: MPMX19_06440 - ISNCY family transposase ISBli29, at 214,688 to 215,506 _06440 MPMX19_06441: MPMX19_06441 - Transcriptional activator protein CopR, at 215,980 to 216,660 _06441 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2 3at 213.787 kb on + strand, within MPMX19_06439at 213.788 kb on - strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 214.008 kb on + strand, within MPMX19_06439at 214.172 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.185 kb on + strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.186 kb on - strand, within MPMX19_06439at 214.190 kb on + strand, within MPMX19_06439at 214.356 kb on + strand, within MPMX19_06439at 214.356 kb on + strand, within MPMX19_06439at 214.357 kb on - strand, within MPMX19_06439at 214.357 kb on - strand, within MPMX19_06439at 214.357 kb on - strand, within MPMX19_06439at 214.357 kb on - strand, within MPMX19_06439at 214.408 kb on - strand, within MPMX19_06439at 214.551 kb on - strandat 214.778 kb on + strand, within MPMX19_06440at 214.778 kb on + strand, within MPMX19_06440at 214.779 kb on - strand, within MPMX19_06440at 214.779 kb on - strand, within MPMX19_06440at 214.779 kb on - strand, within MPMX19_06440at 214.867 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.907 kb on + strand, within MPMX19_06440at 214.908 kb on - strand, within MPMX19_06440at 214.908 kb on - strand, within MPMX19_06440at 214.908 kb on - strand, within MPMX19_06440at 214.908 kb on - strand, within MPMX19_06440at 214.908 kb on - strand, within MPMX19_06440at 214.908 kb on - strand, within MPMX19_06440at 214.940 kb on + strand, within MPMX19_06440at 214.941 kb on - strand, within MPMX19_06440at 215.223 kb on - strand, within MPMX19_06440at 215.223 kb on - strand, within MPMX19_06440at 215.223 kb on - strand, within MPMX19_06440at 215.223 kb on - strand, within MPMX19_06440at 215.249 kb on + strand, within MPMX19_06440at 215.249 kb on + strand, within MPMX19_06440at 215.381 kb on - strand, within MPMX19_06440at 215.381 kb on - strand, within MPMX19_06440at 215.381 kb on - strand, within MPMX19_06440at 215.483 kb on - strandat 215.504 kb on + strandat 215.504 kb on + strandat 215.504 kb on + strandat 215.504 kb on + strandat 215.504 kb on + strandat 215.504 kb on + strandat 215.504 kb on + strandat 215.504 kb on + strandat 215.505 kb on - strandat 215.505 kb on - strandat 215.505 kb on - strandat 215.528 kb on + strandat 215.528 kb on + strandat 215.528 kb on + strandat 215.578 kb on - strandat 215.578 kb on - strandat 215.578 kb on - strandat 215.626 kb on + strandat 215.626 kb on + strandat 215.626 kb on + strandat 215.627 kb on - strandat 215.627 kb on - strandat 215.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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213,787 + MPMX19_06439 0.39 +0.9
213,788 - MPMX19_06439 0.39 -0.9
213,933 + MPMX19_06439 0.49 +0.3
213,933 + MPMX19_06439 0.49 -0.1
213,933 + MPMX19_06439 0.49 +3.3
213,933 + MPMX19_06439 0.49 -1.4
213,933 + MPMX19_06439 0.49 -0.7
213,933 + MPMX19_06439 0.49 -0.1
213,933 + MPMX19_06439 0.49 +0.7
213,933 + MPMX19_06439 0.49 -0.7
213,933 + MPMX19_06439 0.49 -0.9
213,933 + MPMX19_06439 0.49 -0.7
213,933 + MPMX19_06439 0.49 +1.0
213,934 - MPMX19_06439 0.49 -1.7
213,934 - MPMX19_06439 0.49 -0.3
213,934 - MPMX19_06439 0.49 +1.3
213,934 - MPMX19_06439 0.49 -1.1
213,934 - MPMX19_06439 0.49 -0.5
213,934 - MPMX19_06439 0.49 -0.6
214,008 + MPMX19_06439 0.54 -1.2
214,172 + MPMX19_06439 0.65 +0.7
214,185 + MPMX19_06439 0.66 +0.4
214,185 + MPMX19_06439 0.66 -0.1
214,185 + MPMX19_06439 0.66 -0.1
214,185 + MPMX19_06439 0.66 +0.7
214,185 + MPMX19_06439 0.66 -1.3
214,185 + MPMX19_06439 0.66 -0.7
214,185 + MPMX19_06439 0.66 +0.8
214,185 + MPMX19_06439 0.66 -0.4
214,185 + MPMX19_06439 0.66 -2.0
214,185 + MPMX19_06439 0.66 +0.6
214,185 + MPMX19_06439 0.66 -1.1
214,185 + MPMX19_06439 0.66 -1.0
214,185 + MPMX19_06439 0.66 -0.8
214,185 + MPMX19_06439 0.66 +0.1
214,185 + MPMX19_06439 0.66 -1.4
214,185 + MPMX19_06439 0.66 -0.6
214,185 + MPMX19_06439 0.66 +1.3
214,185 + MPMX19_06439 0.66 -0.7
214,185 + MPMX19_06439 0.66 +0.3
214,185 + MPMX19_06439 0.66 -0.8
214,186 - MPMX19_06439 0.66 +0.6
214,186 - MPMX19_06439 0.66 +0.3
214,186 - MPMX19_06439 0.66 -0.7
214,186 - MPMX19_06439 0.66 +0.4
214,186 - MPMX19_06439 0.66 -1.2
214,186 - MPMX19_06439 0.66 -1.2
214,186 - MPMX19_06439 0.66 -0.3
214,186 - MPMX19_06439 0.66 -0.2
214,186 - MPMX19_06439 0.66 -0.6
214,186 - MPMX19_06439 0.66 +0.4
214,186 - MPMX19_06439 0.66 -0.5
214,186 - MPMX19_06439 0.66 +0.2
214,186 - MPMX19_06439 0.66 +1.1
214,186 - MPMX19_06439 0.66 -1.2
214,186 - MPMX19_06439 0.66 +0.4
214,186 - MPMX19_06439 0.66 -1.6
214,186 - MPMX19_06439 0.66 -1.7
214,186 - MPMX19_06439 0.66 -0.7
214,186 - MPMX19_06439 0.66 -0.9
214,186 - MPMX19_06439 0.66 -0.1
214,190 + MPMX19_06439 0.66 +1.4
214,356 + MPMX19_06439 0.77 -1.8
214,356 + MPMX19_06439 0.77 -0.2
214,357 - MPMX19_06439 0.77 -0.2
214,357 - MPMX19_06439 0.77 -0.4
214,357 - MPMX19_06439 0.77 +0.3
214,357 - MPMX19_06439 0.77 -1.1
214,408 - MPMX19_06439 0.81 -1.6
214,551 - -0.6
214,778 + MPMX19_06440 0.11 +0.5
214,778 + MPMX19_06440 0.11 -0.1
214,779 - MPMX19_06440 0.11 +0.3
214,779 - MPMX19_06440 0.11 +0.4
214,779 - MPMX19_06440 0.11 -1.9
214,867 + MPMX19_06440 0.22 -1.4
214,907 + MPMX19_06440 0.27 -0.3
214,907 + MPMX19_06440 0.27 -0.7
214,907 + MPMX19_06440 0.27 +0.2
214,907 + MPMX19_06440 0.27 +0.0
214,907 + MPMX19_06440 0.27 -0.9
214,907 + MPMX19_06440 0.27 +0.4
214,907 + MPMX19_06440 0.27 +0.3
214,907 + MPMX19_06440 0.27 -2.0
214,907 + MPMX19_06440 0.27 -1.6
214,908 - MPMX19_06440 0.27 -0.1
214,908 - MPMX19_06440 0.27 -0.3
214,908 - MPMX19_06440 0.27 -0.6
214,908 - MPMX19_06440 0.27 -0.4
214,908 - MPMX19_06440 0.27 -1.6
214,908 - MPMX19_06440 0.27 -0.4
214,940 + MPMX19_06440 0.31 -1.3
214,941 - MPMX19_06440 0.31 +0.3
215,223 - MPMX19_06440 0.65 -0.3
215,223 - MPMX19_06440 0.65 +0.7
215,223 - MPMX19_06440 0.65 -1.7
215,223 - MPMX19_06440 0.65 +1.0
215,249 + MPMX19_06440 0.68 +0.7
215,249 + MPMX19_06440 0.68 -1.4
215,381 - MPMX19_06440 0.85 -1.8
215,381 - MPMX19_06440 0.85 +0.7
215,381 - MPMX19_06440 0.85 -1.1
215,483 - +1.8
215,504 + +0.1
215,504 + -0.9
215,504 + -1.2
215,504 + +0.3
215,504 + -1.1
215,504 + -0.2
215,504 + +0.7
215,504 + -0.7
215,505 - -0.9
215,505 - +0.3
215,505 - -2.0
215,528 + +0.7
215,528 + +1.9
215,528 + +1.3
215,578 - +2.3
215,578 - -0.6
215,578 - -1.6
215,626 + -1.4
215,626 + -0.6
215,626 + -0.3
215,627 - +0.1
215,627 - -0.6
215,988 - +1.7

Or see this region's nucleotide sequence