Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06439 and MPMX19_06440 overlap by 4 nucleotides MPMX19_06440 and MPMX19_06441 are separated by 473 nucleotides
MPMX19_06439: MPMX19_06439 - hypothetical protein, at 213,216 to 214,691
_06439
MPMX19_06440: MPMX19_06440 - ISNCY family transposase ISBli29, at 214,688 to 215,506
_06440
MPMX19_06441: MPMX19_06441 - Transcriptional activator protein CopR, at 215,980 to 216,660
_06441
Position (kb)
214
215
216 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 213.787 kb on + strand, within MPMX19_06439 at 213.788 kb on - strand, within MPMX19_06439 at 213.933 kb on + strand, within MPMX19_06439 at 213.933 kb on + strand, within MPMX19_06439 at 213.933 kb on + strand, within MPMX19_06439 at 213.933 kb on + strand, within MPMX19_06439 at 213.933 kb on + strand, within MPMX19_06439 at 213.933 kb on + strand, within MPMX19_06439 at 213.933 kb on + strand, within MPMX19_06439 at 213.933 kb on + strand, within MPMX19_06439 at 213.933 kb on + strand, within MPMX19_06439 at 213.933 kb on + strand, within MPMX19_06439 at 213.933 kb on + strand, within MPMX19_06439 at 213.934 kb on - strand, within MPMX19_06439 at 213.934 kb on - strand, within MPMX19_06439 at 213.934 kb on - strand, within MPMX19_06439 at 213.934 kb on - strand, within MPMX19_06439 at 213.934 kb on - strand, within MPMX19_06439 at 213.934 kb on - strand, within MPMX19_06439 at 214.008 kb on + strand, within MPMX19_06439 at 214.172 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.185 kb on + strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.186 kb on - strand, within MPMX19_06439 at 214.190 kb on + strand, within MPMX19_06439 at 214.356 kb on + strand, within MPMX19_06439 at 214.356 kb on + strand, within MPMX19_06439 at 214.357 kb on - strand, within MPMX19_06439 at 214.357 kb on - strand, within MPMX19_06439 at 214.357 kb on - strand, within MPMX19_06439 at 214.357 kb on - strand, within MPMX19_06439 at 214.408 kb on - strand, within MPMX19_06439 at 214.551 kb on - strand at 214.778 kb on + strand, within MPMX19_06440 at 214.778 kb on + strand, within MPMX19_06440 at 214.779 kb on - strand, within MPMX19_06440 at 214.779 kb on - strand, within MPMX19_06440 at 214.779 kb on - strand, within MPMX19_06440 at 214.867 kb on + strand, within MPMX19_06440 at 214.907 kb on + strand, within MPMX19_06440 at 214.907 kb on + strand, within MPMX19_06440 at 214.907 kb on + strand, within MPMX19_06440 at 214.907 kb on + strand, within MPMX19_06440 at 214.907 kb on + strand, within MPMX19_06440 at 214.907 kb on + strand, within MPMX19_06440 at 214.907 kb on + strand, within MPMX19_06440 at 214.907 kb on + strand, within MPMX19_06440 at 214.907 kb on + strand, within MPMX19_06440 at 214.908 kb on - strand, within MPMX19_06440 at 214.908 kb on - strand, within MPMX19_06440 at 214.908 kb on - strand, within MPMX19_06440 at 214.908 kb on - strand, within MPMX19_06440 at 214.908 kb on - strand, within MPMX19_06440 at 214.908 kb on - strand, within MPMX19_06440 at 214.940 kb on + strand, within MPMX19_06440 at 214.941 kb on - strand, within MPMX19_06440 at 215.223 kb on - strand, within MPMX19_06440 at 215.223 kb on - strand, within MPMX19_06440 at 215.223 kb on - strand, within MPMX19_06440 at 215.223 kb on - strand, within MPMX19_06440 at 215.249 kb on + strand, within MPMX19_06440 at 215.249 kb on + strand, within MPMX19_06440 at 215.381 kb on - strand, within MPMX19_06440 at 215.381 kb on - strand, within MPMX19_06440 at 215.381 kb on - strand, within MPMX19_06440 at 215.483 kb on - strand at 215.504 kb on + strand at 215.504 kb on + strand at 215.504 kb on + strand at 215.504 kb on + strand at 215.504 kb on + strand at 215.504 kb on + strand at 215.504 kb on + strand at 215.504 kb on + strand at 215.505 kb on - strand at 215.505 kb on - strand at 215.505 kb on - strand at 215.528 kb on + strand at 215.528 kb on + strand at 215.528 kb on + strand at 215.578 kb on - strand at 215.578 kb on - strand at 215.578 kb on - strand at 215.626 kb on + strand at 215.626 kb on + strand at 215.626 kb on + strand at 215.627 kb on - strand at 215.627 kb on - strand at 215.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 213,787 + MPMX19_06439 0.39 +0.9 213,788 - MPMX19_06439 0.39 -0.9 213,933 + MPMX19_06439 0.49 +0.3 213,933 + MPMX19_06439 0.49 -0.1 213,933 + MPMX19_06439 0.49 +3.3 213,933 + MPMX19_06439 0.49 -1.4 213,933 + MPMX19_06439 0.49 -0.7 213,933 + MPMX19_06439 0.49 -0.1 213,933 + MPMX19_06439 0.49 +0.7 213,933 + MPMX19_06439 0.49 -0.7 213,933 + MPMX19_06439 0.49 -0.9 213,933 + MPMX19_06439 0.49 -0.7 213,933 + MPMX19_06439 0.49 +1.0 213,934 - MPMX19_06439 0.49 -1.7 213,934 - MPMX19_06439 0.49 -0.3 213,934 - MPMX19_06439 0.49 +1.3 213,934 - MPMX19_06439 0.49 -1.1 213,934 - MPMX19_06439 0.49 -0.5 213,934 - MPMX19_06439 0.49 -0.6 214,008 + MPMX19_06439 0.54 -1.2 214,172 + MPMX19_06439 0.65 +0.7 214,185 + MPMX19_06439 0.66 +0.4 214,185 + MPMX19_06439 0.66 -0.1 214,185 + MPMX19_06439 0.66 -0.1 214,185 + MPMX19_06439 0.66 +0.7 214,185 + MPMX19_06439 0.66 -1.3 214,185 + MPMX19_06439 0.66 -0.7 214,185 + MPMX19_06439 0.66 +0.8 214,185 + MPMX19_06439 0.66 -0.4 214,185 + MPMX19_06439 0.66 -2.0 214,185 + MPMX19_06439 0.66 +0.6 214,185 + MPMX19_06439 0.66 -1.1 214,185 + MPMX19_06439 0.66 -1.0 214,185 + MPMX19_06439 0.66 -0.8 214,185 + MPMX19_06439 0.66 +0.1 214,185 + MPMX19_06439 0.66 -1.4 214,185 + MPMX19_06439 0.66 -0.6 214,185 + MPMX19_06439 0.66 +1.3 214,185 + MPMX19_06439 0.66 -0.7 214,185 + MPMX19_06439 0.66 +0.3 214,185 + MPMX19_06439 0.66 -0.8 214,186 - MPMX19_06439 0.66 +0.6 214,186 - MPMX19_06439 0.66 +0.3 214,186 - MPMX19_06439 0.66 -0.7 214,186 - MPMX19_06439 0.66 +0.4 214,186 - MPMX19_06439 0.66 -1.2 214,186 - MPMX19_06439 0.66 -1.2 214,186 - MPMX19_06439 0.66 -0.3 214,186 - MPMX19_06439 0.66 -0.2 214,186 - MPMX19_06439 0.66 -0.6 214,186 - MPMX19_06439 0.66 +0.4 214,186 - MPMX19_06439 0.66 -0.5 214,186 - MPMX19_06439 0.66 +0.2 214,186 - MPMX19_06439 0.66 +1.1 214,186 - MPMX19_06439 0.66 -1.2 214,186 - MPMX19_06439 0.66 +0.4 214,186 - MPMX19_06439 0.66 -1.6 214,186 - MPMX19_06439 0.66 -1.7 214,186 - MPMX19_06439 0.66 -0.7 214,186 - MPMX19_06439 0.66 -0.9 214,186 - MPMX19_06439 0.66 -0.1 214,190 + MPMX19_06439 0.66 +1.4 214,356 + MPMX19_06439 0.77 -1.8 214,356 + MPMX19_06439 0.77 -0.2 214,357 - MPMX19_06439 0.77 -0.2 214,357 - MPMX19_06439 0.77 -0.4 214,357 - MPMX19_06439 0.77 +0.3 214,357 - MPMX19_06439 0.77 -1.1 214,408 - MPMX19_06439 0.81 -1.6 214,551 - -0.6 214,778 + MPMX19_06440 0.11 +0.5 214,778 + MPMX19_06440 0.11 -0.1 214,779 - MPMX19_06440 0.11 +0.3 214,779 - MPMX19_06440 0.11 +0.4 214,779 - MPMX19_06440 0.11 -1.9 214,867 + MPMX19_06440 0.22 -1.4 214,907 + MPMX19_06440 0.27 -0.3 214,907 + MPMX19_06440 0.27 -0.7 214,907 + MPMX19_06440 0.27 +0.2 214,907 + MPMX19_06440 0.27 +0.0 214,907 + MPMX19_06440 0.27 -0.9 214,907 + MPMX19_06440 0.27 +0.4 214,907 + MPMX19_06440 0.27 +0.3 214,907 + MPMX19_06440 0.27 -2.0 214,907 + MPMX19_06440 0.27 -1.6 214,908 - MPMX19_06440 0.27 -0.1 214,908 - MPMX19_06440 0.27 -0.3 214,908 - MPMX19_06440 0.27 -0.6 214,908 - MPMX19_06440 0.27 -0.4 214,908 - MPMX19_06440 0.27 -1.6 214,908 - MPMX19_06440 0.27 -0.4 214,940 + MPMX19_06440 0.31 -1.3 214,941 - MPMX19_06440 0.31 +0.3 215,223 - MPMX19_06440 0.65 -0.3 215,223 - MPMX19_06440 0.65 +0.7 215,223 - MPMX19_06440 0.65 -1.7 215,223 - MPMX19_06440 0.65 +1.0 215,249 + MPMX19_06440 0.68 +0.7 215,249 + MPMX19_06440 0.68 -1.4 215,381 - MPMX19_06440 0.85 -1.8 215,381 - MPMX19_06440 0.85 +0.7 215,381 - MPMX19_06440 0.85 -1.1 215,483 - +1.8 215,504 + +0.1 215,504 + -0.9 215,504 + -1.2 215,504 + +0.3 215,504 + -1.1 215,504 + -0.2 215,504 + +0.7 215,504 + -0.7 215,505 - -0.9 215,505 - +0.3 215,505 - -2.0 215,528 + +0.7 215,528 + +1.9 215,528 + +1.3 215,578 - +2.3 215,578 - -0.6 215,578 - -1.6 215,626 + -1.4 215,626 + -0.6 215,626 + -0.3 215,627 - +0.1 215,627 - -0.6 215,988 - +1.7
Or see this region's nucleotide sequence