Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06431 and MPMX19_06432 are separated by 98 nucleotides MPMX19_06432 and MPMX19_06433 are separated by 229 nucleotides MPMX19_06433 and MPMX19_06434 are separated by 69 nucleotides
MPMX19_06431: MPMX19_06431 - hypothetical protein, at 204,387 to 204,713
_06431
MPMX19_06432: MPMX19_06432 - Copper chaperone CopZ, at 204,812 to 205,012
_06432
MPMX19_06433: MPMX19_06433 - Tn3 family transposase ISAzs17, at 205,242 to 205,946
_06433
MPMX19_06434: MPMX19_06434 - Tyrosine recombinase XerD, at 206,016 to 207,152
_06434
Position (kb) 205
206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 204.388 kb on + strand at 204.388 kb on + strand at 204.388 kb on + strand at 204.389 kb on - strand at 204.389 kb on - strand at 204.389 kb on - strand at 204.389 kb on - strand at 204.389 kb on - strand at 204.389 kb on - strand at 204.389 kb on - strand at 204.738 kb on + strand at 204.738 kb on + strand at 204.738 kb on + strand at 204.739 kb on - strand at 204.739 kb on - strand at 204.739 kb on - strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 205.056 kb on - strand at 205.056 kb on - strand at 205.056 kb on - strand at 205.056 kb on - strand at 205.072 kb on + strand at 205.073 kb on - strand at 205.073 kb on - strand at 205.106 kb on + strand at 205.106 kb on + strand at 205.106 kb on + strand at 205.106 kb on + strand at 205.107 kb on - strand at 205.107 kb on - strand at 205.144 kb on - strand at 205.152 kb on + strand at 205.194 kb on + strand at 205.194 kb on + strand at 205.194 kb on + strand at 205.195 kb on - strand at 205.195 kb on - strand at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.337 kb on + strand, within MPMX19_06433 at 205.383 kb on + strand, within MPMX19_06433 at 205.383 kb on + strand, within MPMX19_06433 at 205.383 kb on + strand, within MPMX19_06433 at 205.384 kb on - strand, within MPMX19_06433 at 205.384 kb on - strand, within MPMX19_06433 at 205.384 kb on - strand, within MPMX19_06433 at 205.384 kb on - strand, within MPMX19_06433 at 205.429 kb on + strand, within MPMX19_06433 at 205.429 kb on + strand, within MPMX19_06433 at 205.429 kb on + strand, within MPMX19_06433 at 205.430 kb on - strand, within MPMX19_06433 at 205.430 kb on - strand, within MPMX19_06433 at 205.430 kb on - strand, within MPMX19_06433 at 205.430 kb on - strand, within MPMX19_06433 at 205.451 kb on + strand, within MPMX19_06433 at 205.452 kb on - strand, within MPMX19_06433 at 205.452 kb on - strand, within MPMX19_06433 at 205.626 kb on + strand, within MPMX19_06433 at 205.626 kb on + strand, within MPMX19_06433 at 205.626 kb on + strand, within MPMX19_06433 at 205.626 kb on + strand, within MPMX19_06433 at 205.626 kb on + strand, within MPMX19_06433 at 205.627 kb on - strand, within MPMX19_06433 at 205.627 kb on - strand, within MPMX19_06433 at 205.627 kb on - strand, within MPMX19_06433 at 205.627 kb on - strand, within MPMX19_06433 at 205.627 kb on - strand, within MPMX19_06433 at 205.627 kb on - strand, within MPMX19_06433 at 205.627 kb on - strand, within MPMX19_06433 at 205.861 kb on + strand, within MPMX19_06433 at 205.862 kb on - strand, within MPMX19_06433 at 205.889 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.949 kb on + strand at 205.949 kb on + strand at 205.949 kb on + strand at 205.949 kb on + strand at 205.949 kb on + strand at 205.950 kb on - strand at 205.950 kb on - strand at 205.950 kb on - strand at 206.015 kb on + strand at 206.015 kb on + strand at 206.015 kb on + strand at 206.015 kb on + strand at 206.015 kb on + strand at 206.015 kb on + strand at 206.015 kb on + strand at 206.015 kb on + strand at 206.016 kb on - strand at 206.016 kb on - strand at 206.016 kb on - strand at 206.016 kb on - strand at 206.016 kb on - strand at 206.016 kb on - strand at 206.016 kb on - strand at 206.154 kb on + strand, within MPMX19_06434 at 206.155 kb on - strand, within MPMX19_06434 at 206.346 kb on - strand, within MPMX19_06434 at 206.379 kb on + strand, within MPMX19_06434 at 206.380 kb on - strand, within MPMX19_06434 at 206.380 kb on - strand, within MPMX19_06434 at 206.688 kb on + strand, within MPMX19_06434 at 206.689 kb on - strand, within MPMX19_06434 at 206.689 kb on - strand, within MPMX19_06434 at 206.710 kb on + strand, within MPMX19_06434 at 206.710 kb on + strand, within MPMX19_06434 at 206.711 kb on - strand, within MPMX19_06434 at 206.711 kb on - strand, within MPMX19_06434 at 206.711 kb on - strand, within MPMX19_06434 at 206.711 kb on - strand, within MPMX19_06434 at 206.811 kb on + strand, within MPMX19_06434 at 206.811 kb on + strand, within MPMX19_06434 at 206.811 kb on + strand, within MPMX19_06434 at 206.811 kb on + strand, within MPMX19_06434 at 206.811 kb on + strand, within MPMX19_06434 at 206.811 kb on + strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.850 kb on + strand, within MPMX19_06434 at 206.860 kb on + strand, within MPMX19_06434 at 206.860 kb on + strand, within MPMX19_06434 at 206.861 kb on - strand, within MPMX19_06434 at 206.901 kb on + strand, within MPMX19_06434 at 206.902 kb on - strand, within MPMX19_06434
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 204,388 + -0.4 204,388 + -0.1 204,388 + -0.4 204,389 - +0.7 204,389 - -0.6 204,389 - -0.2 204,389 - -0.7 204,389 - -0.1 204,389 - +0.8 204,389 - +0.7 204,738 + -0.2 204,738 + +0.2 204,738 + -1.0 204,739 - -1.3 204,739 - -0.3 204,739 - +0.8 204,740 + -0.1 204,740 + -0.2 204,740 + -0.2 204,740 + -0.3 204,740 + +0.7 204,740 + -0.8 204,740 + +0.1 204,740 + -0.1 204,740 + +0.5 204,740 + +0.2 204,740 + -1.2 204,741 - -1.2 204,741 - -1.1 204,741 - -0.3 204,741 - -0.6 204,741 - -0.3 204,741 - -0.7 204,741 - +1.4 204,741 - -0.4 204,741 - -0.4 204,741 - +2.3 204,741 - +0.8 204,741 - -0.7 205,056 - -0.2 205,056 - -1.3 205,056 - -0.9 205,056 - -0.2 205,072 + -0.4 205,073 - +0.2 205,073 - -0.9 205,106 + -1.4 205,106 + -0.6 205,106 + -0.7 205,106 + +0.9 205,107 - -1.1 205,107 - -1.4 205,144 - -0.6 205,152 + -0.6 205,194 + -0.3 205,194 + +0.5 205,194 + +0.3 205,195 - +0.9 205,195 - -1.3 205,318 + MPMX19_06433 0.11 +0.3 205,318 + MPMX19_06433 0.11 -0.6 205,318 + MPMX19_06433 0.11 -1.6 205,318 + MPMX19_06433 0.11 +1.7 205,318 + MPMX19_06433 0.11 -0.2 205,318 + MPMX19_06433 0.11 +0.7 205,318 + MPMX19_06433 0.11 -1.4 205,318 + MPMX19_06433 0.11 +0.1 205,318 + MPMX19_06433 0.11 +1.3 205,318 + MPMX19_06433 0.11 -1.4 205,318 + MPMX19_06433 0.11 -0.7 205,318 + MPMX19_06433 0.11 -1.1 205,318 + MPMX19_06433 0.11 +0.3 205,318 + MPMX19_06433 0.11 +0.5 205,318 + MPMX19_06433 0.11 -1.1 205,319 - MPMX19_06433 0.11 -0.3 205,319 - MPMX19_06433 0.11 +0.3 205,319 - MPMX19_06433 0.11 -0.1 205,319 - MPMX19_06433 0.11 -1.7 205,319 - MPMX19_06433 0.11 +0.4 205,319 - MPMX19_06433 0.11 -0.2 205,319 - MPMX19_06433 0.11 -2.2 205,319 - MPMX19_06433 0.11 -1.6 205,319 - MPMX19_06433 0.11 +0.8 205,319 - MPMX19_06433 0.11 -0.1 205,319 - MPMX19_06433 0.11 -0.2 205,319 - MPMX19_06433 0.11 -1.2 205,319 - MPMX19_06433 0.11 -1.1 205,319 - MPMX19_06433 0.11 -1.7 205,337 + MPMX19_06433 0.13 +1.5 205,383 + MPMX19_06433 0.20 +1.7 205,383 + MPMX19_06433 0.20 -0.7 205,383 + MPMX19_06433 0.20 +0.9 205,384 - MPMX19_06433 0.20 -0.1 205,384 - MPMX19_06433 0.20 -0.8 205,384 - MPMX19_06433 0.20 -0.5 205,384 - MPMX19_06433 0.20 -1.3 205,429 + MPMX19_06433 0.27 +0.8 205,429 + MPMX19_06433 0.27 +2.3 205,429 + MPMX19_06433 0.27 +0.6 205,430 - MPMX19_06433 0.27 -0.1 205,430 - MPMX19_06433 0.27 -0.6 205,430 - MPMX19_06433 0.27 +1.1 205,430 - MPMX19_06433 0.27 -0.4 205,451 + MPMX19_06433 0.30 +0.6 205,452 - MPMX19_06433 0.30 +0.4 205,452 - MPMX19_06433 0.30 -1.4 205,626 + MPMX19_06433 0.54 +0.3 205,626 + MPMX19_06433 0.54 -1.3 205,626 + MPMX19_06433 0.54 +0.4 205,626 + MPMX19_06433 0.54 +0.5 205,626 + MPMX19_06433 0.54 +0.1 205,627 - MPMX19_06433 0.55 -1.1 205,627 - MPMX19_06433 0.55 +0.4 205,627 - MPMX19_06433 0.55 +0.1 205,627 - MPMX19_06433 0.55 +0.5 205,627 - MPMX19_06433 0.55 -0.8 205,627 - MPMX19_06433 0.55 -0.7 205,627 - MPMX19_06433 0.55 -0.8 205,861 + MPMX19_06433 0.88 +0.0 205,862 - MPMX19_06433 0.88 -0.6 205,889 + -0.2 205,923 + -0.7 205,923 + -0.8 205,923 + -3.7 205,923 + -1.1 205,923 + +1.8 205,923 + -1.8 205,923 + -1.4 205,923 + +0.0 205,923 + -2.3 205,923 + +0.0 205,924 - -0.8 205,924 - -0.5 205,924 - -0.7 205,924 - -0.9 205,924 - -0.3 205,924 - -0.9 205,924 - -0.1 205,924 - -0.5 205,924 - -2.4 205,924 - -1.8 205,924 - +0.9 205,947 + -0.7 205,947 + -1.1 205,947 + -2.3 205,947 + +1.3 205,947 + +0.7 205,947 + -0.9 205,947 + -0.6 205,947 + -1.1 205,947 + -1.3 205,947 + +0.5 205,947 + +0.3 205,947 + -0.6 205,947 + -0.4 205,947 + +0.9 205,948 - -0.9 205,948 - -0.3 205,948 - -0.7 205,948 - -2.6 205,948 - -0.7 205,948 - -1.1 205,948 - -0.5 205,948 - +1.0 205,948 - -0.1 205,948 - -2.0 205,948 - -1.8 205,948 - +2.3 205,948 - -1.6 205,949 + +0.5 205,949 + -0.6 205,949 + -1.1 205,949 + -2.5 205,949 + -1.2 205,950 - -2.6 205,950 - +0.7 205,950 - +0.3 206,015 + -0.6 206,015 + -3.1 206,015 + -1.1 206,015 + -0.9 206,015 + -1.3 206,015 + +0.4 206,015 + +0.4 206,015 + +0.1 206,016 - -1.1 206,016 - -1.2 206,016 - -0.2 206,016 - -0.2 206,016 - -1.2 206,016 - +0.1 206,016 - +0.1 206,154 + MPMX19_06434 0.12 -0.6 206,155 - MPMX19_06434 0.12 +0.3 206,346 - MPMX19_06434 0.29 -1.1 206,379 + MPMX19_06434 0.32 +0.6 206,380 - MPMX19_06434 0.32 -0.8 206,380 - MPMX19_06434 0.32 -0.9 206,688 + MPMX19_06434 0.59 -0.1 206,689 - MPMX19_06434 0.59 +0.6 206,689 - MPMX19_06434 0.59 +0.9 206,710 + MPMX19_06434 0.61 -1.2 206,710 + MPMX19_06434 0.61 -0.4 206,711 - MPMX19_06434 0.61 -0.6 206,711 - MPMX19_06434 0.61 -0.9 206,711 - MPMX19_06434 0.61 -0.9 206,711 - MPMX19_06434 0.61 -0.7 206,811 + MPMX19_06434 0.70 -0.5 206,811 + MPMX19_06434 0.70 -1.6 206,811 + MPMX19_06434 0.70 -0.6 206,811 + MPMX19_06434 0.70 -0.2 206,811 + MPMX19_06434 0.70 -0.1 206,811 + MPMX19_06434 0.70 -2.2 206,812 - MPMX19_06434 0.70 +0.7 206,812 - MPMX19_06434 0.70 -0.3 206,812 - MPMX19_06434 0.70 -0.4 206,812 - MPMX19_06434 0.70 -0.0 206,812 - MPMX19_06434 0.70 -0.9 206,812 - MPMX19_06434 0.70 -1.2 206,812 - MPMX19_06434 0.70 -1.5 206,812 - MPMX19_06434 0.70 -0.6 206,850 + MPMX19_06434 0.73 -0.2 206,860 + MPMX19_06434 0.74 -0.9 206,860 + MPMX19_06434 0.74 -0.2 206,861 - MPMX19_06434 0.74 +1.0 206,901 + MPMX19_06434 0.78 -2.3 206,902 - MPMX19_06434 0.78 -0.3
Or see this region's nucleotide sequence