Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06409 and MPMX19_06410 are separated by 121 nucleotides MPMX19_06410 and MPMX19_06411 are separated by 207 nucleotides MPMX19_06411 and MPMX19_06412 overlap by 4 nucleotides
MPMX19_06409: MPMX19_06409 - hypothetical protein, at 176,603 to 177,874
_06409
MPMX19_06410: MPMX19_06410 - hypothetical protein, at 177,996 to 178,355
_06410
MPMX19_06411: MPMX19_06411 - Adaptive-response sensory-kinase SasA, at 178,563 to 179,909
_06411
MPMX19_06412: MPMX19_06412 - Transcriptional regulatory protein OmpR, at 179,906 to 180,505
_06412
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2 at 177.579 kb on + strand, within MPMX19_06409 at 177.579 kb on + strand, within MPMX19_06409 at 177.579 kb on + strand, within MPMX19_06409 at 177.579 kb on + strand, within MPMX19_06409 at 177.579 kb on + strand, within MPMX19_06409 at 177.579 kb on + strand, within MPMX19_06409 at 177.580 kb on - strand, within MPMX19_06409 at 177.580 kb on - strand, within MPMX19_06409 at 177.580 kb on - strand, within MPMX19_06409 at 177.580 kb on - strand, within MPMX19_06409 at 177.613 kb on - strand, within MPMX19_06409 at 177.613 kb on - strand, within MPMX19_06409 at 177.685 kb on + strand, within MPMX19_06409 at 177.685 kb on + strand, within MPMX19_06409 at 177.685 kb on + strand, within MPMX19_06409 at 177.685 kb on + strand, within MPMX19_06409 at 177.685 kb on + strand, within MPMX19_06409 at 177.686 kb on - strand, within MPMX19_06409 at 177.686 kb on - strand, within MPMX19_06409 at 177.686 kb on - strand, within MPMX19_06409 at 177.878 kb on + strand at 177.878 kb on + strand at 177.878 kb on + strand at 177.878 kb on + strand at 177.878 kb on + strand at 177.878 kb on + strand at 177.878 kb on + strand at 177.878 kb on + strand at 177.878 kb on + strand at 177.879 kb on - strand at 177.879 kb on - strand at 177.879 kb on - strand at 177.950 kb on - strand at 178.175 kb on + strand, within MPMX19_06410 at 178.175 kb on + strand, within MPMX19_06410 at 178.176 kb on - strand, within MPMX19_06410 at 178.379 kb on + strand at 178.391 kb on - strand at 178.564 kb on + strand at 178.564 kb on + strand at 178.564 kb on - strand at 178.565 kb on - strand at 178.565 kb on - strand at 178.596 kb on + strand at 178.596 kb on + strand at 178.597 kb on - strand at 178.597 kb on - strand at 178.625 kb on + strand at 178.625 kb on + strand at 178.626 kb on - strand at 178.626 kb on - strand at 178.626 kb on - strand at 178.626 kb on - strand at 178.626 kb on - strand at 178.788 kb on - strand, within MPMX19_06411 at 178.819 kb on - strand, within MPMX19_06411 at 178.819 kb on - strand, within MPMX19_06411 at 178.819 kb on - strand, within MPMX19_06411 at 178.837 kb on + strand, within MPMX19_06411 at 178.837 kb on + strand, within MPMX19_06411 at 178.838 kb on - strand, within MPMX19_06411 at 178.838 kb on - strand, within MPMX19_06411 at 178.838 kb on - strand, within MPMX19_06411 at 178.842 kb on + strand, within MPMX19_06411 at 178.843 kb on - strand, within MPMX19_06411 at 178.924 kb on + strand, within MPMX19_06411 at 178.924 kb on + strand, within MPMX19_06411 at 178.924 kb on + strand, within MPMX19_06411 at 178.925 kb on - strand, within MPMX19_06411 at 178.925 kb on - strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.930 kb on - strand, within MPMX19_06411 at 178.930 kb on - strand, within MPMX19_06411 at 178.930 kb on - strand, within MPMX19_06411 at 179.046 kb on + strand, within MPMX19_06411 at 179.199 kb on - strand, within MPMX19_06411 at 179.199 kb on - strand, within MPMX19_06411 at 179.419 kb on - strand, within MPMX19_06411 at 179.419 kb on - strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.529 kb on + strand, within MPMX19_06411 at 179.529 kb on + strand, within MPMX19_06411 at 179.530 kb on - strand, within MPMX19_06411 at 179.530 kb on - strand, within MPMX19_06411 at 179.530 kb on - strand, within MPMX19_06411 at 179.622 kb on + strand, within MPMX19_06411 at 179.622 kb on + strand, within MPMX19_06411 at 179.622 kb on + strand, within MPMX19_06411 at 179.623 kb on - strand, within MPMX19_06411 at 179.623 kb on - strand, within MPMX19_06411 at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.868 kb on - strand at 179.868 kb on - strand at 179.868 kb on - strand at 179.890 kb on - strand at 179.937 kb on + strand at 179.937 kb on + strand at 179.938 kb on - strand at 179.938 kb on - strand at 179.938 kb on - strand at 179.959 kb on + strand at 179.960 kb on - strand at 179.960 kb on - strand at 179.960 kb on - strand at 180.036 kb on + strand, within MPMX19_06412 at 180.036 kb on + strand, within MPMX19_06412 at 180.037 kb on - strand, within MPMX19_06412 at 180.037 kb on - strand, within MPMX19_06412 at 180.126 kb on + strand, within MPMX19_06412 at 180.126 kb on + strand, within MPMX19_06412 at 180.127 kb on - strand, within MPMX19_06412 at 180.127 kb on - strand, within MPMX19_06412 at 180.212 kb on + strand, within MPMX19_06412 at 180.213 kb on - strand, within MPMX19_06412 at 180.213 kb on - strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.353 kb on - strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.458 kb on + strand at 180.458 kb on + strand at 180.458 kb on + strand at 180.458 kb on + strand at 180.458 kb on + strand at 180.459 kb on - strand at 180.459 kb on - strand at 180.476 kb on + strand at 180.476 kb on + strand at 180.476 kb on + strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.493 kb on + strand at 180.493 kb on + strand at 180.494 kb on - strand at 180.520 kb on + strand at 180.521 kb on - strand at 180.613 kb on + strand at 180.613 kb on + strand at 180.613 kb on + strand at 180.613 kb on + strand at 180.614 kb on - strand at 180.614 kb on - strand at 180.614 kb on - strand at 180.614 kb on - strand at 180.631 kb on + strand at 180.632 kb on - strand at 180.661 kb on + strand at 180.661 kb on + strand at 180.662 kb on - strand at 180.662 kb on - strand at 180.781 kb on + strand at 180.781 kb on + strand at 180.781 kb on + strand at 180.781 kb on + strand at 180.782 kb on - strand at 180.782 kb on - strand at 180.782 kb on - strand at 180.782 kb on - strand at 180.808 kb on + strand at 180.809 kb on - strand at 180.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 177,579 + MPMX19_06409 0.77 -1.6 177,579 + MPMX19_06409 0.77 -1.3 177,579 + MPMX19_06409 0.77 -0.7 177,579 + MPMX19_06409 0.77 +0.3 177,579 + MPMX19_06409 0.77 +0.9 177,579 + MPMX19_06409 0.77 +0.1 177,580 - MPMX19_06409 0.77 +0.7 177,580 - MPMX19_06409 0.77 -0.6 177,580 - MPMX19_06409 0.77 -2.2 177,580 - MPMX19_06409 0.77 -0.1 177,613 - MPMX19_06409 0.79 +1.0 177,613 - MPMX19_06409 0.79 +1.4 177,685 + MPMX19_06409 0.85 +0.4 177,685 + MPMX19_06409 0.85 -1.2 177,685 + MPMX19_06409 0.85 +0.7 177,685 + MPMX19_06409 0.85 -1.0 177,685 + MPMX19_06409 0.85 +0.7 177,686 - MPMX19_06409 0.85 -0.1 177,686 - MPMX19_06409 0.85 -2.1 177,686 - MPMX19_06409 0.85 -1.1 177,878 + -1.0 177,878 + +0.0 177,878 + -0.1 177,878 + -1.1 177,878 + -1.6 177,878 + -0.7 177,878 + -1.7 177,878 + -0.6 177,878 + -0.4 177,879 - +0.8 177,879 - -0.2 177,879 - +0.3 177,950 - -1.6 178,175 + MPMX19_06410 0.50 +0.7 178,175 + MPMX19_06410 0.50 +0.3 178,176 - MPMX19_06410 0.50 -0.9 178,379 + -0.2 178,391 - -0.4 178,564 + -1.2 178,564 + +0.7 178,564 - -1.0 178,565 - -0.1 178,565 - +1.3 178,596 + -1.4 178,596 + +0.7 178,597 - -1.1 178,597 - -0.6 178,625 + +0.3 178,625 + -0.4 178,626 - -0.3 178,626 - -1.3 178,626 - -0.2 178,626 - -1.1 178,626 - -1.3 178,788 - MPMX19_06411 0.17 -0.2 178,819 - MPMX19_06411 0.19 +0.5 178,819 - MPMX19_06411 0.19 +0.7 178,819 - MPMX19_06411 0.19 +1.5 178,837 + MPMX19_06411 0.20 +0.3 178,837 + MPMX19_06411 0.20 -1.1 178,838 - MPMX19_06411 0.20 +0.1 178,838 - MPMX19_06411 0.20 -0.4 178,838 - MPMX19_06411 0.20 +1.5 178,842 + MPMX19_06411 0.21 -0.3 178,843 - MPMX19_06411 0.21 -0.0 178,924 + MPMX19_06411 0.27 +0.8 178,924 + MPMX19_06411 0.27 -0.9 178,924 + MPMX19_06411 0.27 -1.4 178,925 - MPMX19_06411 0.27 -1.4 178,925 - MPMX19_06411 0.27 -0.3 178,929 + MPMX19_06411 0.27 +1.4 178,929 + MPMX19_06411 0.27 +0.1 178,929 + MPMX19_06411 0.27 +0.7 178,929 + MPMX19_06411 0.27 +0.7 178,929 + MPMX19_06411 0.27 +0.0 178,929 + MPMX19_06411 0.27 -1.0 178,930 - MPMX19_06411 0.27 +0.7 178,930 - MPMX19_06411 0.27 -0.5 178,930 - MPMX19_06411 0.27 -1.2 179,046 + MPMX19_06411 0.36 +1.8 179,199 - MPMX19_06411 0.47 +0.7 179,199 - MPMX19_06411 0.47 -0.6 179,419 - MPMX19_06411 0.64 -0.4 179,419 - MPMX19_06411 0.64 -0.1 179,524 + MPMX19_06411 0.71 -0.9 179,524 + MPMX19_06411 0.71 +0.4 179,524 + MPMX19_06411 0.71 -1.2 179,524 + MPMX19_06411 0.71 +0.2 179,524 + MPMX19_06411 0.71 -0.4 179,524 + MPMX19_06411 0.71 +1.3 179,524 + MPMX19_06411 0.71 -1.4 179,524 + MPMX19_06411 0.71 +0.7 179,525 - MPMX19_06411 0.71 +0.8 179,525 - MPMX19_06411 0.71 -1.1 179,525 - MPMX19_06411 0.71 +1.1 179,525 - MPMX19_06411 0.71 +1.4 179,525 - MPMX19_06411 0.71 +0.3 179,525 - MPMX19_06411 0.71 -1.7 179,529 + MPMX19_06411 0.72 -0.6 179,529 + MPMX19_06411 0.72 -1.8 179,530 - MPMX19_06411 0.72 +0.7 179,530 - MPMX19_06411 0.72 -0.6 179,530 - MPMX19_06411 0.72 -1.2 179,622 + MPMX19_06411 0.79 -1.7 179,622 + MPMX19_06411 0.79 -0.1 179,622 + MPMX19_06411 0.79 +1.0 179,623 - MPMX19_06411 0.79 +0.9 179,623 - MPMX19_06411 0.79 -1.3 179,804 + -0.3 179,804 + +0.5 179,804 + -0.5 179,804 + -0.4 179,804 + -1.3 179,804 + -0.8 179,804 + +1.3 179,804 + -0.1 179,804 + -1.0 179,804 + -0.3 179,804 + +0.7 179,804 + -0.1 179,804 + -1.1 179,805 - +0.4 179,805 - -0.1 179,805 - -0.6 179,805 - -0.9 179,805 - -1.0 179,805 - -1.5 179,805 - +0.7 179,805 - -0.6 179,805 - +1.3 179,805 - -1.2 179,805 - -2.1 179,805 - -0.4 179,805 - +0.1 179,805 - -0.3 179,805 - +0.6 179,868 - -0.5 179,868 - -0.7 179,868 - -1.5 179,890 - -0.9 179,937 + -0.7 179,937 + +0.4 179,938 - -0.7 179,938 - -0.6 179,938 - -0.6 179,959 + -1.3 179,960 - -1.1 179,960 - +0.3 179,960 - -1.8 180,036 + MPMX19_06412 0.22 -0.2 180,036 + MPMX19_06412 0.22 -0.3 180,037 - MPMX19_06412 0.22 -0.3 180,037 - MPMX19_06412 0.22 -0.1 180,126 + MPMX19_06412 0.37 +0.4 180,126 + MPMX19_06412 0.37 +1.0 180,127 - MPMX19_06412 0.37 -1.3 180,127 - MPMX19_06412 0.37 -1.6 180,212 + MPMX19_06412 0.51 -0.2 180,213 - MPMX19_06412 0.51 -0.1 180,213 - MPMX19_06412 0.51 -0.6 180,318 + MPMX19_06412 0.69 -0.1 180,318 + MPMX19_06412 0.69 -1.2 180,318 + MPMX19_06412 0.69 -0.8 180,318 + MPMX19_06412 0.69 -1.5 180,318 + MPMX19_06412 0.69 -0.1 180,319 - MPMX19_06412 0.69 -0.1 180,319 - MPMX19_06412 0.69 +0.4 180,319 - MPMX19_06412 0.69 -0.6 180,319 - MPMX19_06412 0.69 -0.0 180,353 - MPMX19_06412 0.74 +0.7 180,439 + MPMX19_06412 0.89 -1.3 180,439 + MPMX19_06412 0.89 +1.1 180,439 + MPMX19_06412 0.89 -0.7 180,439 + MPMX19_06412 0.89 -1.3 180,440 - MPMX19_06412 0.89 -0.9 180,440 - MPMX19_06412 0.89 -1.6 180,440 - MPMX19_06412 0.89 -0.6 180,440 - MPMX19_06412 0.89 +0.4 180,458 + +1.0 180,458 + -0.9 180,458 + +0.3 180,458 + +1.7 180,458 + +0.3 180,459 - -1.1 180,459 - -0.9 180,476 + -0.4 180,476 + -0.1 180,476 + -0.5 180,477 - +0.3 180,477 - -1.9 180,477 - -0.3 180,477 - +0.4 180,477 - -0.2 180,493 + -0.6 180,493 + +1.3 180,494 - -0.8 180,520 + -0.9 180,521 - -0.1 180,613 + -0.2 180,613 + +0.7 180,613 + -0.6 180,613 + -0.9 180,614 - -1.1 180,614 - -1.6 180,614 - -1.4 180,614 - -1.1 180,631 + -0.1 180,632 - +0.1 180,661 + -0.3 180,661 + -0.3 180,662 - -0.9 180,662 - -1.1 180,781 + -1.6 180,781 + -0.6 180,781 + +0.1 180,781 + -0.8 180,782 - -0.9 180,782 - +0.6 180,782 - -2.7 180,782 - -1.2 180,808 + +0.4 180,809 - +0.7 180,896 + -0.2
Or see this region's nucleotide sequence