Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06309

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06308 and MPMX19_06309 are separated by 590 nucleotidesMPMX19_06309 and MPMX19_06310 are separated by 125 nucleotidesMPMX19_06310 and MPMX19_06311 are separated by 55 nucleotides MPMX19_06308: MPMX19_06308 - hypothetical protein, at 71,901 to 72,500 _06308 MPMX19_06309: MPMX19_06309 - hypothetical protein, at 73,091 to 73,396 _06309 MPMX19_06310: MPMX19_06310 - hypothetical protein, at 73,522 to 73,719 _06310 MPMX19_06311: MPMX19_06311 - Serine/threonine-protein kinase toxin HipA, at 73,775 to 75,061 _06311 Position (kb) 73 74Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.381 kb on + strand, within MPMX19_06308at 72.381 kb on + strand, within MPMX19_06308at 72.381 kb on + strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.666 kb on + strandat 72.666 kb on + strandat 72.733 kb on + strandat 72.802 kb on + strandat 72.802 kb on + strandat 72.803 kb on - strandat 72.809 kb on + strandat 72.809 kb on + strandat 73.050 kb on + strandat 73.050 kb on + strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.118 kb on - strandat 73.118 kb on - strandat 73.118 kb on - strandat 73.118 kb on - strandat 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.238 kb on + strand, within MPMX19_06309at 73.246 kb on + strand, within MPMX19_06309at 73.246 kb on + strand, within MPMX19_06309at 73.448 kb on + strandat 73.449 kb on - strandat 73.475 kb on + strandat 73.475 kb on + strandat 73.475 kb on + strandat 73.475 kb on + strandat 73.476 kb on - strandat 73.476 kb on - strandat 73.491 kb on + strandat 73.501 kb on + strandat 73.501 kb on + strandat 73.501 kb on + strandat 73.502 kb on - strandat 73.502 kb on - strandat 73.538 kb on + strandat 73.538 kb on + strandat 73.539 kb on - strandat 73.539 kb on - strandat 73.568 kb on + strand, within MPMX19_06310at 74.112 kb on + strand, within MPMX19_06311at 74.112 kb on + strand, within MPMX19_06311at 74.113 kb on - strand, within MPMX19_06311at 74.113 kb on - strand, within MPMX19_06311at 74.113 kb on - strand, within MPMX19_06311at 74.113 kb on - strand, within MPMX19_06311at 74.152 kb on + strand, within MPMX19_06311at 74.152 kb on + strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.310 kb on + strand, within MPMX19_06311at 74.310 kb on + strand, within MPMX19_06311at 74.310 kb on + strand, within MPMX19_06311at 74.311 kb on - strand, within MPMX19_06311at 74.311 kb on - strand, within MPMX19_06311

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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72,238 + MPMX19_06308 0.56 -1.2
72,238 + MPMX19_06308 0.56 -1.0
72,238 + MPMX19_06308 0.56 +0.8
72,238 + MPMX19_06308 0.56 -0.7
72,238 + MPMX19_06308 0.56 -1.1
72,238 + MPMX19_06308 0.56 -2.1
72,238 + MPMX19_06308 0.56 -2.3
72,238 + MPMX19_06308 0.56 -1.1
72,238 + MPMX19_06308 0.56 +1.3
72,238 + MPMX19_06308 0.56 -0.2
72,238 + MPMX19_06308 0.56 +0.4
72,238 + MPMX19_06308 0.56 +0.5
72,238 + MPMX19_06308 0.56 -0.6
72,238 + MPMX19_06308 0.56 -0.7
72,238 + MPMX19_06308 0.56 -0.9
72,238 + MPMX19_06308 0.56 -0.6
72,238 + MPMX19_06308 0.56 -0.7
72,238 + MPMX19_06308 0.56 -1.6
72,239 - MPMX19_06308 0.56 +1.3
72,239 - MPMX19_06308 0.56 -1.2
72,239 - MPMX19_06308 0.56 -0.4
72,239 - MPMX19_06308 0.56 -1.7
72,239 - MPMX19_06308 0.56 +0.1
72,239 - MPMX19_06308 0.56 -0.9
72,239 - MPMX19_06308 0.56 -1.0
72,239 - MPMX19_06308 0.56 -0.9
72,239 - MPMX19_06308 0.56 +0.1
72,381 + MPMX19_06308 0.80 +1.3
72,381 + MPMX19_06308 0.80 -0.1
72,381 + MPMX19_06308 0.80 +0.3
72,382 - MPMX19_06308 0.80 +1.4
72,382 - MPMX19_06308 0.80 -0.5
72,382 - MPMX19_06308 0.80 -1.1
72,382 - MPMX19_06308 0.80 -0.6
72,382 - MPMX19_06308 0.80 +1.8
72,382 - MPMX19_06308 0.80 -1.6
72,666 + -1.2
72,666 + -1.1
72,733 + +0.1
72,802 + -2.8
72,802 + +0.1
72,803 - -0.8
72,809 + -1.0
72,809 + +0.3
73,050 + -0.5
73,050 + +0.0
73,051 - +1.4
73,051 - -1.0
73,051 - -1.1
73,051 - +0.8
73,051 - +0.5
73,051 - +0.1
73,118 - +0.0
73,118 - +1.3
73,118 - -2.0
73,118 - -0.1
73,188 - MPMX19_06309 0.32 -0.1
73,188 - MPMX19_06309 0.32 -2.0
73,188 - MPMX19_06309 0.32 -1.2
73,188 - MPMX19_06309 0.32 -1.1
73,188 - MPMX19_06309 0.32 +0.4
73,188 - MPMX19_06309 0.32 -1.1
73,188 - MPMX19_06309 0.32 -0.6
73,188 - MPMX19_06309 0.32 -1.4
73,238 + MPMX19_06309 0.48 -2.1
73,246 + MPMX19_06309 0.51 -0.3
73,246 + MPMX19_06309 0.51 -1.2
73,448 + +0.2
73,449 - -0.3
73,475 + -0.2
73,475 + +0.1
73,475 + -0.1
73,475 + -0.3
73,476 - -0.5
73,476 - +0.3
73,491 + -0.9
73,501 + -2.2
73,501 + -0.8
73,501 + -1.7
73,502 - -1.5
73,502 - -1.1
73,538 + -1.5
73,538 + -1.3
73,539 - -0.3
73,539 - +0.3
73,568 + MPMX19_06310 0.23 -0.1
74,112 + MPMX19_06311 0.26 -0.6
74,112 + MPMX19_06311 0.26 -0.7
74,113 - MPMX19_06311 0.26 -2.0
74,113 - MPMX19_06311 0.26 +1.3
74,113 - MPMX19_06311 0.26 -0.3
74,113 - MPMX19_06311 0.26 -0.1
74,152 + MPMX19_06311 0.29 +0.0
74,152 + MPMX19_06311 0.29 -0.1
74,153 - MPMX19_06311 0.29 -0.4
74,153 - MPMX19_06311 0.29 -2.2
74,153 - MPMX19_06311 0.29 -0.4
74,153 - MPMX19_06311 0.29 +0.2
74,153 - MPMX19_06311 0.29 -0.9
74,153 - MPMX19_06311 0.29 -2.1
74,153 - MPMX19_06311 0.29 -0.6
74,157 + MPMX19_06311 0.30 +0.6
74,157 + MPMX19_06311 0.30 +0.7
74,157 + MPMX19_06311 0.30 +1.8
74,157 + MPMX19_06311 0.30 +0.9
74,157 + MPMX19_06311 0.30 +0.4
74,157 + MPMX19_06311 0.30 -0.2
74,157 + MPMX19_06311 0.30 -0.6
74,158 - MPMX19_06311 0.30 -0.4
74,158 - MPMX19_06311 0.30 -2.1
74,158 - MPMX19_06311 0.30 -1.1
74,158 - MPMX19_06311 0.30 -2.2
74,158 - MPMX19_06311 0.30 -0.9
74,158 - MPMX19_06311 0.30 +0.7
74,158 - MPMX19_06311 0.30 +1.9
74,158 - MPMX19_06311 0.30 +0.1
74,158 - MPMX19_06311 0.30 -1.1
74,158 - MPMX19_06311 0.30 -0.9
74,310 + MPMX19_06311 0.42 -1.1
74,310 + MPMX19_06311 0.42 -2.2
74,310 + MPMX19_06311 0.42 -0.2
74,311 - MPMX19_06311 0.42 -1.2
74,311 - MPMX19_06311 0.42 -1.2

Or see this region's nucleotide sequence