Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06276

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06275 and MPMX19_06276 are separated by 66 nucleotidesMPMX19_06276 and MPMX19_06277 are separated by 27 nucleotides MPMX19_06275: MPMX19_06275 - Argininosuccinate lyase, at 22,824 to 24,365 _06275 MPMX19_06276: MPMX19_06276 - hypothetical protein, at 24,432 to 25,361 _06276 MPMX19_06277: MPMX19_06277 - hypothetical protein, at 25,389 to 26,615 _06277 Position (kb) 24 25 26Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 23.470 kb on + strand, within MPMX19_06275at 23.470 kb on + strand, within MPMX19_06275at 23.470 kb on + strand, within MPMX19_06275at 23.470 kb on + strand, within MPMX19_06275at 23.470 kb on + strand, within MPMX19_06275at 23.471 kb on - strand, within MPMX19_06275at 23.471 kb on - strand, within MPMX19_06275at 23.471 kb on - strand, within MPMX19_06275at 23.471 kb on - strand, within MPMX19_06275at 23.471 kb on - strand, within MPMX19_06275at 23.471 kb on - strand, within MPMX19_06275at 23.730 kb on + strand, within MPMX19_06275at 23.730 kb on + strand, within MPMX19_06275at 23.730 kb on + strand, within MPMX19_06275at 23.731 kb on - strand, within MPMX19_06275at 23.731 kb on - strand, within MPMX19_06275at 23.731 kb on - strand, within MPMX19_06275at 23.731 kb on - strand, within MPMX19_06275at 23.731 kb on - strand, within MPMX19_06275at 23.731 kb on - strand, within MPMX19_06275at 23.731 kb on - strand, within MPMX19_06275at 23.824 kb on + strand, within MPMX19_06275at 23.824 kb on + strand, within MPMX19_06275at 23.824 kb on + strand, within MPMX19_06275at 23.824 kb on + strand, within MPMX19_06275at 23.825 kb on - strand, within MPMX19_06275at 23.825 kb on - strand, within MPMX19_06275at 23.825 kb on - strand, within MPMX19_06275at 23.825 kb on - strand, within MPMX19_06275at 23.825 kb on - strand, within MPMX19_06275at 23.825 kb on - strand, within MPMX19_06275at 23.825 kb on - strand, within MPMX19_06275at 23.825 kb on - strand, within MPMX19_06275at 23.825 kb on - strand, within MPMX19_06275at 23.825 kb on - strand, within MPMX19_06275at 23.827 kb on + strand, within MPMX19_06275at 23.827 kb on + strand, within MPMX19_06275at 23.828 kb on - strand, within MPMX19_06275at 23.860 kb on + strand, within MPMX19_06275at 23.861 kb on - strand, within MPMX19_06275at 23.869 kb on + strand, within MPMX19_06275at 23.870 kb on - strand, within MPMX19_06275at 23.870 kb on - strand, within MPMX19_06275at 23.870 kb on - strand, within MPMX19_06275at 23.870 kb on - strand, within MPMX19_06275at 23.870 kb on - strand, within MPMX19_06275at 23.870 kb on - strand, within MPMX19_06275at 23.870 kb on - strand, within MPMX19_06275at 23.870 kb on - strand, within MPMX19_06275at 23.870 kb on - strand, within MPMX19_06275at 24.061 kb on + strand, within MPMX19_06275at 24.061 kb on + strand, within MPMX19_06275at 24.061 kb on + strand, within MPMX19_06275at 24.061 kb on + strand, within MPMX19_06275at 24.061 kb on + strand, within MPMX19_06275at 24.061 kb on + strand, within MPMX19_06275at 24.061 kb on + strand, within MPMX19_06275at 24.062 kb on - strand, within MPMX19_06275at 24.062 kb on - strand, within MPMX19_06275at 24.062 kb on - strand, within MPMX19_06275at 24.062 kb on - strand, within MPMX19_06275at 24.062 kb on - strand, within MPMX19_06275at 24.062 kb on - strand, within MPMX19_06275at 24.062 kb on - strand, within MPMX19_06275at 24.062 kb on - strand, within MPMX19_06275at 24.062 kb on - strand, within MPMX19_06275at 24.062 kb on - strand, within MPMX19_06275at 24.070 kb on + strand, within MPMX19_06275at 24.070 kb on + strand, within MPMX19_06275at 24.071 kb on - strand, within MPMX19_06275at 24.071 kb on - strand, within MPMX19_06275at 24.079 kb on + strand, within MPMX19_06275at 24.079 kb on + strand, within MPMX19_06275at 24.079 kb on + strand, within MPMX19_06275at 24.079 kb on + strand, within MPMX19_06275at 24.079 kb on + strand, within MPMX19_06275at 24.079 kb on + strand, within MPMX19_06275at 24.079 kb on + strand, within MPMX19_06275at 24.080 kb on - strand, within MPMX19_06275at 24.080 kb on - strand, within MPMX19_06275at 24.080 kb on - strand, within MPMX19_06275at 24.080 kb on - strand, within MPMX19_06275at 24.080 kb on - strand, within MPMX19_06275at 24.080 kb on - strand, within MPMX19_06275at 24.080 kb on - strand, within MPMX19_06275at 24.080 kb on - strand, within MPMX19_06275at 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.808 kb on + strand, within MPMX19_06276at 24.808 kb on + strand, within MPMX19_06276at 24.809 kb on - strand, within MPMX19_06276at 24.817 kb on + strand, within MPMX19_06276at 24.817 kb on + strand, within MPMX19_06276at 24.817 kb on + strand, within MPMX19_06276at 24.817 kb on + strand, within MPMX19_06276at 24.817 kb on + strand, within MPMX19_06276at 24.817 kb on + strand, within MPMX19_06276at 24.817 kb on + strand, within MPMX19_06276at 24.818 kb on - strand, within MPMX19_06276at 24.818 kb on - strand, within MPMX19_06276at 24.818 kb on - strand, within MPMX19_06276at 24.818 kb on - strand, within MPMX19_06276at 24.818 kb on - strand, within MPMX19_06276at 24.818 kb on - strand, within MPMX19_06276at 25.000 kb on - strand, within MPMX19_06276at 25.000 kb on - strand, within MPMX19_06276at 25.213 kb on + strand, within MPMX19_06276at 25.213 kb on + strand, within MPMX19_06276at 25.213 kb on + strand, within MPMX19_06276at 25.213 kb on + strand, within MPMX19_06276at 25.213 kb on + strand, within MPMX19_06276at 25.214 kb on - strand, within MPMX19_06276at 25.542 kb on + strand, within MPMX19_06277at 25.542 kb on + strand, within MPMX19_06277at 25.543 kb on - strand, within MPMX19_06277at 25.543 kb on - strand, within MPMX19_06277at 25.544 kb on + strand, within MPMX19_06277at 25.544 kb on + strand, within MPMX19_06277at 25.544 kb on + strand, within MPMX19_06277at 25.544 kb on + strand, within MPMX19_06277at 25.544 kb on + strand, within MPMX19_06277at 25.545 kb on - strand, within MPMX19_06277at 25.545 kb on - strand, within MPMX19_06277at 25.545 kb on - strand, within MPMX19_06277at 25.545 kb on - strand, within MPMX19_06277at 25.564 kb on + strand, within MPMX19_06277at 25.689 kb on + strand, within MPMX19_06277at 25.689 kb on + strand, within MPMX19_06277at 25.689 kb on + strand, within MPMX19_06277at 25.689 kb on + strand, within MPMX19_06277at 25.689 kb on + strand, within MPMX19_06277at 25.689 kb on + strand, within MPMX19_06277at 25.690 kb on - strand, within MPMX19_06277at 25.690 kb on - strand, within MPMX19_06277at 25.690 kb on - strand, within MPMX19_06277at 25.690 kb on - strand, within MPMX19_06277at 25.690 kb on - strand, within MPMX19_06277at 25.690 kb on - strand, within MPMX19_06277at 25.690 kb on - strand, within MPMX19_06277at 26.024 kb on - strand, within MPMX19_06277at 26.026 kb on + strand, within MPMX19_06277at 26.026 kb on + strand, within MPMX19_06277at 26.027 kb on - strand, within MPMX19_06277at 26.027 kb on - strand, within MPMX19_06277at 26.027 kb on - strand, within MPMX19_06277at 26.344 kb on - strand, within MPMX19_06277at 26.344 kb on - strand, within MPMX19_06277

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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23,470 + MPMX19_06275 0.42 -0.6
23,470 + MPMX19_06275 0.42 -0.6
23,470 + MPMX19_06275 0.42 +0.1
23,470 + MPMX19_06275 0.42 +0.6
23,470 + MPMX19_06275 0.42 +0.7
23,471 - MPMX19_06275 0.42 -0.7
23,471 - MPMX19_06275 0.42 +0.9
23,471 - MPMX19_06275 0.42 +1.0
23,471 - MPMX19_06275 0.42 -1.9
23,471 - MPMX19_06275 0.42 -0.1
23,471 - MPMX19_06275 0.42 +0.2
23,730 + MPMX19_06275 0.59 -0.3
23,730 + MPMX19_06275 0.59 +0.9
23,730 + MPMX19_06275 0.59 -0.7
23,731 - MPMX19_06275 0.59 -1.4
23,731 - MPMX19_06275 0.59 -2.6
23,731 - MPMX19_06275 0.59 -1.2
23,731 - MPMX19_06275 0.59 +0.4
23,731 - MPMX19_06275 0.59 +0.3
23,731 - MPMX19_06275 0.59 -2.1
23,731 - MPMX19_06275 0.59 -0.6
23,824 + MPMX19_06275 0.65 +0.0
23,824 + MPMX19_06275 0.65 -1.4
23,824 + MPMX19_06275 0.65 -1.9
23,824 + MPMX19_06275 0.65 -1.4
23,825 - MPMX19_06275 0.65 -0.1
23,825 - MPMX19_06275 0.65 -0.3
23,825 - MPMX19_06275 0.65 -0.1
23,825 - MPMX19_06275 0.65 -0.3
23,825 - MPMX19_06275 0.65 +0.8
23,825 - MPMX19_06275 0.65 +0.3
23,825 - MPMX19_06275 0.65 -1.1
23,825 - MPMX19_06275 0.65 -0.2
23,825 - MPMX19_06275 0.65 -0.9
23,825 - MPMX19_06275 0.65 +0.2
23,827 + MPMX19_06275 0.65 -0.9
23,827 + MPMX19_06275 0.65 -0.1
23,828 - MPMX19_06275 0.65 -0.7
23,860 + MPMX19_06275 0.67 -0.4
23,861 - MPMX19_06275 0.67 -0.4
23,869 + MPMX19_06275 0.68 -0.7
23,870 - MPMX19_06275 0.68 -1.0
23,870 - MPMX19_06275 0.68 -0.6
23,870 - MPMX19_06275 0.68 -0.1
23,870 - MPMX19_06275 0.68 -0.7
23,870 - MPMX19_06275 0.68 -1.4
23,870 - MPMX19_06275 0.68 -1.1
23,870 - MPMX19_06275 0.68 -2.2
23,870 - MPMX19_06275 0.68 -0.2
23,870 - MPMX19_06275 0.68 -1.1
24,061 + MPMX19_06275 0.80 +0.0
24,061 + MPMX19_06275 0.80 +0.1
24,061 + MPMX19_06275 0.80 -1.2
24,061 + MPMX19_06275 0.80 +0.3
24,061 + MPMX19_06275 0.80 -0.3
24,061 + MPMX19_06275 0.80 +0.7
24,061 + MPMX19_06275 0.80 -3.1
24,062 - MPMX19_06275 0.80 +0.4
24,062 - MPMX19_06275 0.80 -0.9
24,062 - MPMX19_06275 0.80 +0.9
24,062 - MPMX19_06275 0.80 +0.8
24,062 - MPMX19_06275 0.80 +0.5
24,062 - MPMX19_06275 0.80 -0.2
24,062 - MPMX19_06275 0.80 -0.2
24,062 - MPMX19_06275 0.80 -1.3
24,062 - MPMX19_06275 0.80 -0.6
24,062 - MPMX19_06275 0.80 -0.6
24,070 + MPMX19_06275 0.81 +0.4
24,070 + MPMX19_06275 0.81 -1.0
24,071 - MPMX19_06275 0.81 -0.1
24,071 - MPMX19_06275 0.81 -1.1
24,079 + MPMX19_06275 0.81 -0.9
24,079 + MPMX19_06275 0.81 -1.2
24,079 + MPMX19_06275 0.81 -0.1
24,079 + MPMX19_06275 0.81 +0.1
24,079 + MPMX19_06275 0.81 -0.2
24,079 + MPMX19_06275 0.81 +0.4
24,079 + MPMX19_06275 0.81 -2.7
24,080 - MPMX19_06275 0.81 -0.7
24,080 - MPMX19_06275 0.81 -1.1
24,080 - MPMX19_06275 0.81 -1.4
24,080 - MPMX19_06275 0.81 -1.1
24,080 - MPMX19_06275 0.81 -1.8
24,080 - MPMX19_06275 0.81 -0.1
24,080 - MPMX19_06275 0.81 +0.9
24,080 - MPMX19_06275 0.81 -0.6
24,400 + +0.7
24,400 + +0.6
24,400 + -1.2
24,400 + +2.0
24,400 + -0.5
24,400 + -0.4
24,400 + +1.3
24,400 + -0.5
24,400 + -0.5
24,400 + -0.7
24,400 + -0.9
24,400 + +1.1
24,401 - -0.6
24,401 - -0.7
24,401 - +0.3
24,401 - +0.3
24,401 - +1.3
24,401 - +0.1
24,401 - -0.7
24,401 - -1.3
24,401 - -2.1
24,401 - -0.2
24,401 - -0.6
24,401 - -1.9
24,401 - -0.3
24,808 + MPMX19_06276 0.40 -2.4
24,808 + MPMX19_06276 0.40 -0.3
24,809 - MPMX19_06276 0.41 -1.7
24,817 + MPMX19_06276 0.41 -0.9
24,817 + MPMX19_06276 0.41 -0.2
24,817 + MPMX19_06276 0.41 +1.1
24,817 + MPMX19_06276 0.41 +1.3
24,817 + MPMX19_06276 0.41 -2.3
24,817 + MPMX19_06276 0.41 -0.7
24,817 + MPMX19_06276 0.41 -1.1
24,818 - MPMX19_06276 0.42 +0.7
24,818 - MPMX19_06276 0.42 -0.1
24,818 - MPMX19_06276 0.42 +0.1
24,818 - MPMX19_06276 0.42 -0.3
24,818 - MPMX19_06276 0.42 -0.3
24,818 - MPMX19_06276 0.42 -2.6
25,000 - MPMX19_06276 0.61 -1.3
25,000 - MPMX19_06276 0.61 -0.3
25,213 + MPMX19_06276 0.84 -0.7
25,213 + MPMX19_06276 0.84 -0.1
25,213 + MPMX19_06276 0.84 +0.1
25,213 + MPMX19_06276 0.84 -1.1
25,213 + MPMX19_06276 0.84 -0.2
25,214 - MPMX19_06276 0.84 +2.7
25,542 + MPMX19_06277 0.12 -1.7
25,542 + MPMX19_06277 0.12 -0.8
25,543 - MPMX19_06277 0.13 +0.7
25,543 - MPMX19_06277 0.13 +0.1
25,544 + MPMX19_06277 0.13 -0.3
25,544 + MPMX19_06277 0.13 -1.2
25,544 + MPMX19_06277 0.13 +0.3
25,544 + MPMX19_06277 0.13 +0.0
25,544 + MPMX19_06277 0.13 -0.9
25,545 - MPMX19_06277 0.13 +0.4
25,545 - MPMX19_06277 0.13 +0.3
25,545 - MPMX19_06277 0.13 -0.6
25,545 - MPMX19_06277 0.13 -0.4
25,564 + MPMX19_06277 0.14 -1.4
25,689 + MPMX19_06277 0.24 -0.7
25,689 + MPMX19_06277 0.24 +1.8
25,689 + MPMX19_06277 0.24 +0.3
25,689 + MPMX19_06277 0.24 +0.1
25,689 + MPMX19_06277 0.24 -0.9
25,689 + MPMX19_06277 0.24 -0.6
25,690 - MPMX19_06277 0.25 -1.2
25,690 - MPMX19_06277 0.25 -1.6
25,690 - MPMX19_06277 0.25 -1.8
25,690 - MPMX19_06277 0.25 -0.2
25,690 - MPMX19_06277 0.25 -0.7
25,690 - MPMX19_06277 0.25 -2.1
25,690 - MPMX19_06277 0.25 +0.3
26,024 - MPMX19_06277 0.52 +1.4
26,026 + MPMX19_06277 0.52 -1.2
26,026 + MPMX19_06277 0.52 -1.4
26,027 - MPMX19_06277 0.52 -1.1
26,027 - MPMX19_06277 0.52 +1.3
26,027 - MPMX19_06277 0.52 -0.9
26,344 - MPMX19_06277 0.78 -0.5
26,344 - MPMX19_06277 0.78 -1.0

Or see this region's nucleotide sequence