Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06259 and MPMX19_06260 are separated by 853 nucleotides MPMX19_06260 and MPMX19_06261 are separated by 166 nucleotides MPMX19_06261 and MPMX19_06262 are separated by 20 nucleotides MPMX19_06262 and MPMX19_06263 overlap by 4 nucleotides
MPMX19_06259: MPMX19_06259 - hypothetical protein, at 11,517 to 11,873
_06259
MPMX19_06260: MPMX19_06260 - hypothetical protein, at 12,727 to 13,389
_06260
MPMX19_06261: MPMX19_06261 - hypothetical protein, at 13,556 to 13,984
_06261
MPMX19_06262: MPMX19_06262 - hypothetical protein, at 14,005 to 14,142
_06262
MPMX19_06263: MPMX19_06263 - hypothetical protein, at 14,139 to 14,441
_06263
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 11.763 kb on + strand, within MPMX19_06259 at 11.764 kb on - strand, within MPMX19_06259 at 11.905 kb on + strand at 11.905 kb on + strand at 11.905 kb on + strand at 11.906 kb on - strand at 11.906 kb on - strand at 11.906 kb on - strand at 11.949 kb on + strand at 11.949 kb on + strand at 11.949 kb on + strand at 11.949 kb on + strand at 11.949 kb on + strand at 11.949 kb on + strand at 11.949 kb on + strand at 11.949 kb on + strand at 11.949 kb on + strand at 11.949 kb on + strand at 11.950 kb on - strand at 11.950 kb on - strand at 11.950 kb on - strand at 11.950 kb on - strand at 11.950 kb on - strand at 12.056 kb on + strand at 12.056 kb on + strand at 12.056 kb on + strand at 12.056 kb on + strand at 12.056 kb on + strand at 12.057 kb on - strand at 12.057 kb on - strand at 12.057 kb on - strand at 12.057 kb on - strand at 12.199 kb on + strand at 12.199 kb on + strand at 12.199 kb on + strand at 12.199 kb on + strand at 12.199 kb on + strand at 12.199 kb on + strand at 12.199 kb on + strand at 12.199 kb on + strand at 12.199 kb on + strand at 12.200 kb on - strand at 12.200 kb on - strand at 12.200 kb on - strand at 12.200 kb on - strand at 12.200 kb on - strand at 12.200 kb on - strand at 12.200 kb on - strand at 12.280 kb on + strand at 12.280 kb on + strand at 12.280 kb on + strand at 12.281 kb on - strand at 12.398 kb on + strand at 12.398 kb on + strand at 12.398 kb on + strand at 12.398 kb on + strand at 12.398 kb on + strand at 12.398 kb on + strand at 12.398 kb on + strand at 12.398 kb on + strand at 12.398 kb on + strand at 12.398 kb on + strand at 12.398 kb on + strand at 12.398 kb on + strand at 12.398 kb on + strand at 12.398 kb on + strand at 12.398 kb on + strand at 12.399 kb on - strand at 12.399 kb on - strand at 12.399 kb on - strand at 12.399 kb on - strand at 12.399 kb on - strand at 12.399 kb on - strand at 12.399 kb on - strand at 12.399 kb on - strand at 12.399 kb on - strand at 12.399 kb on - strand at 12.427 kb on + strand at 12.489 kb on - strand at 12.489 kb on - strand at 12.489 kb on - strand at 12.489 kb on - strand at 12.513 kb on - strand at 12.570 kb on + strand at 12.570 kb on + strand at 12.570 kb on + strand at 12.570 kb on + strand at 12.571 kb on - strand at 12.571 kb on - strand at 12.571 kb on - strand at 12.666 kb on + strand at 12.666 kb on + strand at 12.666 kb on + strand at 12.667 kb on - strand at 12.667 kb on - strand at 12.667 kb on - strand at 12.667 kb on - strand at 12.667 kb on - strand at 12.667 kb on - strand at 12.667 kb on - strand at 12.700 kb on + strand at 12.866 kb on + strand, within MPMX19_06260 at 12.866 kb on + strand, within MPMX19_06260 at 12.866 kb on + strand, within MPMX19_06260 at 12.866 kb on + strand, within MPMX19_06260 at 12.866 kb on + strand, within MPMX19_06260 at 12.867 kb on - strand, within MPMX19_06260 at 12.867 kb on - strand, within MPMX19_06260 at 12.867 kb on - strand, within MPMX19_06260 at 12.867 kb on - strand, within MPMX19_06260 at 13.089 kb on - strand, within MPMX19_06260 at 13.259 kb on + strand, within MPMX19_06260 at 13.259 kb on + strand, within MPMX19_06260 at 13.259 kb on + strand, within MPMX19_06260 at 13.260 kb on - strand, within MPMX19_06260 at 13.260 kb on - strand, within MPMX19_06260 at 13.365 kb on - strand at 13.365 kb on - strand at 13.365 kb on - strand at 13.365 kb on - strand at 13.405 kb on + strand at 13.405 kb on + strand at 13.405 kb on + strand at 13.406 kb on - strand at 13.406 kb on - strand at 13.406 kb on - strand at 13.406 kb on - strand at 13.406 kb on - strand at 13.410 kb on + strand at 13.411 kb on - strand at 13.411 kb on - strand at 13.411 kb on - strand at 13.415 kb on + strand at 13.416 kb on - strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.617 kb on + strand, within MPMX19_06261 at 13.617 kb on + strand, within MPMX19_06261 at 13.618 kb on - strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.756 kb on - strand, within MPMX19_06261 at 13.756 kb on - strand, within MPMX19_06261 at 13.756 kb on - strand, within MPMX19_06261 at 13.923 kb on + strand, within MPMX19_06261 at 13.923 kb on + strand, within MPMX19_06261 at 13.923 kb on + strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 14.007 kb on - strand at 14.215 kb on + strand, within MPMX19_06263 at 14.215 kb on + strand, within MPMX19_06263 at 14.215 kb on + strand, within MPMX19_06263 at 14.216 kb on - strand, within MPMX19_06263 at 14.216 kb on - strand, within MPMX19_06263 at 14.281 kb on + strand, within MPMX19_06263 at 14.281 kb on + strand, within MPMX19_06263
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 11,763 + MPMX19_06259 0.69 +0.6 11,764 - MPMX19_06259 0.69 +0.1 11,905 + -0.7 11,905 + -0.6 11,905 + -2.3 11,906 - +1.3 11,906 - -1.0 11,906 - +0.6 11,949 + -0.9 11,949 + +2.3 11,949 + +0.1 11,949 + +0.9 11,949 + -2.0 11,949 + +1.5 11,949 + -0.2 11,949 + -0.1 11,949 + +0.4 11,949 + -1.0 11,950 - -1.3 11,950 - -0.6 11,950 - +2.6 11,950 - +0.1 11,950 - -0.7 12,056 + +0.3 12,056 + -1.7 12,056 + -1.2 12,056 + +0.8 12,056 + -0.3 12,057 - -1.2 12,057 - -1.6 12,057 - -1.1 12,057 - -1.3 12,199 + -0.3 12,199 + -0.6 12,199 + +0.6 12,199 + -0.9 12,199 + +0.2 12,199 + -0.4 12,199 + -2.2 12,199 + -1.5 12,199 + -0.3 12,200 - -0.1 12,200 - -0.6 12,200 - -0.6 12,200 - -0.4 12,200 - -2.0 12,200 - -0.3 12,200 - +0.3 12,280 + +0.4 12,280 + -0.1 12,280 + +0.1 12,281 - +0.3 12,398 + -1.1 12,398 + -0.6 12,398 + -0.3 12,398 + -0.3 12,398 + +0.0 12,398 + -0.8 12,398 + -0.1 12,398 + -0.0 12,398 + +0.3 12,398 + -1.9 12,398 + +1.3 12,398 + -0.7 12,398 + +0.9 12,398 + -0.6 12,398 + +0.5 12,399 - -0.9 12,399 - -0.5 12,399 - -0.6 12,399 - -0.6 12,399 - -0.9 12,399 - -0.2 12,399 - +0.1 12,399 - -0.3 12,399 - +0.1 12,399 - +0.6 12,427 + -0.8 12,489 - -1.1 12,489 - -1.3 12,489 - -0.6 12,489 - -0.1 12,513 - -1.1 12,570 + -0.3 12,570 + -1.8 12,570 + +0.3 12,570 + +0.3 12,571 - -1.1 12,571 - +1.5 12,571 - -0.3 12,666 + +0.3 12,666 + -0.1 12,666 + +0.3 12,667 - -0.6 12,667 - +1.0 12,667 - -1.1 12,667 - +0.4 12,667 - -1.0 12,667 - +0.1 12,667 - +0.3 12,700 + +0.8 12,866 + MPMX19_06260 0.21 +0.3 12,866 + MPMX19_06260 0.21 -1.1 12,866 + MPMX19_06260 0.21 -0.2 12,866 + MPMX19_06260 0.21 -0.3 12,866 + MPMX19_06260 0.21 +0.6 12,867 - MPMX19_06260 0.21 +0.4 12,867 - MPMX19_06260 0.21 -1.7 12,867 - MPMX19_06260 0.21 +0.3 12,867 - MPMX19_06260 0.21 -0.4 13,089 - MPMX19_06260 0.55 -0.5 13,259 + MPMX19_06260 0.80 +0.4 13,259 + MPMX19_06260 0.80 +0.0 13,259 + MPMX19_06260 0.80 +0.1 13,260 - MPMX19_06260 0.80 +0.3 13,260 - MPMX19_06260 0.80 -0.2 13,365 - +1.3 13,365 - +0.9 13,365 - -0.8 13,365 - -0.2 13,405 + -0.7 13,405 + +0.7 13,405 + -0.1 13,406 - -2.4 13,406 - +0.3 13,406 - -0.6 13,406 - -1.1 13,406 - +0.0 13,410 + -0.2 13,411 - -0.9 13,411 - +1.1 13,411 - +0.3 13,415 + -0.3 13,416 - -0.1 13,450 + +0.5 13,450 + +0.4 13,450 + +0.0 13,450 + -0.6 13,450 + +0.3 13,450 + -1.4 13,450 + +0.9 13,450 + -1.2 13,451 - +0.3 13,451 - +0.1 13,451 - +0.2 13,451 - +0.3 13,451 - +1.7 13,451 - -0.4 13,451 - -0.3 13,451 - -0.2 13,451 - -0.2 13,451 - -1.2 13,617 + MPMX19_06261 0.14 -1.8 13,617 + MPMX19_06261 0.14 -1.1 13,618 - MPMX19_06261 0.14 -0.3 13,755 + MPMX19_06261 0.46 -0.1 13,755 + MPMX19_06261 0.46 +0.6 13,755 + MPMX19_06261 0.46 +0.8 13,755 + MPMX19_06261 0.46 -0.2 13,755 + MPMX19_06261 0.46 -0.5 13,756 - MPMX19_06261 0.47 +0.8 13,756 - MPMX19_06261 0.47 -2.0 13,756 - MPMX19_06261 0.47 +0.1 13,923 + MPMX19_06261 0.86 -1.3 13,923 + MPMX19_06261 0.86 -0.8 13,923 + MPMX19_06261 0.86 +0.5 13,924 - MPMX19_06261 0.86 -0.5 13,924 - MPMX19_06261 0.86 -1.0 13,924 - MPMX19_06261 0.86 -0.6 13,924 - MPMX19_06261 0.86 +0.8 13,924 - MPMX19_06261 0.86 +0.7 13,924 - MPMX19_06261 0.86 -0.3 13,924 - MPMX19_06261 0.86 +1.3 14,007 - -0.6 14,215 + MPMX19_06263 0.25 -0.9 14,215 + MPMX19_06263 0.25 -0.4 14,215 + MPMX19_06263 0.25 +0.6 14,216 - MPMX19_06263 0.25 +1.5 14,216 - MPMX19_06263 0.25 +0.0 14,281 + MPMX19_06263 0.47 -0.4 14,281 + MPMX19_06263 0.47 +0.3
Or see this region's nucleotide sequence