Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06249 and MPMX19_06250 are separated by 191 nucleotides MPMX19_06250 and MPMX19_06251 overlap by 4 nucleotides
MPMX19_06249: MPMX19_06249 - hypothetical protein, at 1 to 930
_06249
MPMX19_06250: MPMX19_06250 - hypothetical protein, at 1,122 to 1,751
_06250
MPMX19_06251: MPMX19_06251 - hypothetical protein, at 1,748 to 2,320
_06251
Position (kb)
1
2 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 0.939 kb on + strand at 0.939 kb on + strand at 0.939 kb on + strand at 0.939 kb on + strand at 0.939 kb on + strand at 0.939 kb on + strand at 0.983 kb on + strand at 0.983 kb on + strand at 0.984 kb on - strand at 0.984 kb on - strand at 2.394 kb on + strand at 2.395 kb on - strand at 2.460 kb on + strand at 2.460 kb on + strand at 2.460 kb on + strand at 2.460 kb on + strand at 2.461 kb on - strand at 2.461 kb on - strand at 2.563 kb on + strand at 2.666 kb on - strand at 2.713 kb on + strand at 2.713 kb on + strand at 2.713 kb on + strand at 2.713 kb on + strand at 2.713 kb on + strand at 2.713 kb on + strand at 2.713 kb on + strand at 2.713 kb on + strand at 2.714 kb on - strand at 2.714 kb on - strand at 2.714 kb on - strand at 2.714 kb on - strand at 2.714 kb on - strand at 2.714 kb on - strand at 2.714 kb on - strand at 2.714 kb on - strand at 2.714 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 939 + +0.2 939 + -0.3 939 + -0.6 939 + -1.2 939 + -0.2 939 + -0.8 983 + -0.8 983 + -0.6 984 - +1.4 984 - -1.8 2,394 + +1.3 2,395 - -0.3 2,460 + -0.9 2,460 + -0.9 2,460 + +0.3 2,460 + +0.7 2,461 - +1.8 2,461 - +1.3 2,563 + -1.2 2,666 - -0.6 2,713 + +0.4 2,713 + -0.1 2,713 + -1.0 2,713 + -0.3 2,713 + +0.4 2,713 + -0.7 2,713 + -0.4 2,713 + +0.1 2,714 - -0.9 2,714 - -0.3 2,714 - -1.1 2,714 - -0.1 2,714 - +3.3 2,714 - +0.3 2,714 - -1.4 2,714 - +1.9 2,714 - +1.3
Or see this region's nucleotide sequence