Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06248

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06247 and MPMX19_06248 are separated by 352 nucleotides MPMX19_06247: MPMX19_06247 - hypothetical protein, at 438,878 to 440,188 _06247 MPMX19_06248: MPMX19_06248 - Zinc transporter ZitB, at 440,541 to 441,521 _06248 Position (kb) 440 441 442Strain fitness (log2 ratio) -2 -1 0 1 2 3at 439.851 kb on + strand, within MPMX19_06247at 439.851 kb on + strand, within MPMX19_06247at 439.851 kb on + strand, within MPMX19_06247at 439.851 kb on + strand, within MPMX19_06247at 439.851 kb on + strand, within MPMX19_06247at 439.851 kb on + strand, within MPMX19_06247at 439.851 kb on + strand, within MPMX19_06247at 439.851 kb on + strand, within MPMX19_06247at 439.851 kb on + strand, within MPMX19_06247at 439.851 kb on + strand, within MPMX19_06247at 439.851 kb on + strand, within MPMX19_06247at 439.851 kb on + strand, within MPMX19_06247at 439.851 kb on + strand, within MPMX19_06247at 439.851 kb on + strand, within MPMX19_06247at 439.851 kb on + strand, within MPMX19_06247at 439.852 kb on - strand, within MPMX19_06247at 439.852 kb on - strand, within MPMX19_06247at 439.852 kb on - strand, within MPMX19_06247at 439.852 kb on - strand, within MPMX19_06247at 439.852 kb on - strand, within MPMX19_06247at 439.852 kb on - strand, within MPMX19_06247at 439.852 kb on - strand, within MPMX19_06247at 439.852 kb on - strand, within MPMX19_06247at 439.852 kb on - strand, within MPMX19_06247at 439.852 kb on - strand, within MPMX19_06247at 439.962 kb on + strand, within MPMX19_06247at 439.962 kb on + strand, within MPMX19_06247at 439.963 kb on - strand, within MPMX19_06247at 440.272 kb on + strandat 440.272 kb on + strandat 440.272 kb on + strandat 440.272 kb on + strandat 440.272 kb on + strandat 440.272 kb on + strandat 440.272 kb on + strandat 440.272 kb on + strandat 440.290 kb on + strandat 440.290 kb on + strandat 440.368 kb on + strandat 440.368 kb on + strandat 440.368 kb on + strandat 440.368 kb on + strandat 440.368 kb on + strandat 440.368 kb on + strandat 440.374 kb on + strandat 440.842 kb on + strand, within MPMX19_06248at 440.842 kb on + strand, within MPMX19_06248at 440.843 kb on - strand, within MPMX19_06248at 440.843 kb on - strand, within MPMX19_06248at 440.905 kb on + strand, within MPMX19_06248at 440.905 kb on + strand, within MPMX19_06248at 440.906 kb on - strand, within MPMX19_06248at 441.184 kb on + strand, within MPMX19_06248at 441.184 kb on + strand, within MPMX19_06248at 441.184 kb on + strand, within MPMX19_06248at 441.184 kb on + strand, within MPMX19_06248at 441.184 kb on + strand, within MPMX19_06248at 441.184 kb on + strand, within MPMX19_06248at 441.184 kb on + strand, within MPMX19_06248at 441.184 kb on + strand, within MPMX19_06248at 441.184 kb on + strand, within MPMX19_06248at 441.184 kb on + strand, within MPMX19_06248at 441.184 kb on + strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.185 kb on - strand, within MPMX19_06248at 441.244 kb on + strand, within MPMX19_06248at 441.244 kb on + strand, within MPMX19_06248at 441.244 kb on + strand, within MPMX19_06248at 441.244 kb on + strand, within MPMX19_06248at 441.244 kb on + strand, within MPMX19_06248at 441.244 kb on + strand, within MPMX19_06248at 441.244 kb on + strand, within MPMX19_06248at 441.244 kb on + strand, within MPMX19_06248at 441.245 kb on - strand, within MPMX19_06248at 441.245 kb on - strand, within MPMX19_06248at 441.245 kb on - strand, within MPMX19_06248at 441.245 kb on - strand, within MPMX19_06248at 441.245 kb on - strand, within MPMX19_06248at 441.245 kb on - strand, within MPMX19_06248at 441.245 kb on - strand, within MPMX19_06248at 441.246 kb on + strand, within MPMX19_06248at 441.246 kb on + strand, within MPMX19_06248at 441.246 kb on + strand, within MPMX19_06248at 441.246 kb on + strand, within MPMX19_06248at 441.246 kb on + strand, within MPMX19_06248at 441.247 kb on - strand, within MPMX19_06248at 441.247 kb on - strand, within MPMX19_06248at 441.260 kb on - strand, within MPMX19_06248at 441.894 kb on + strandat 441.895 kb on - strandat 441.897 kb on + strandat 441.898 kb on - strandat 441.972 kb on + strandat 442.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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439,851 + MPMX19_06247 0.74 +1.0
439,851 + MPMX19_06247 0.74 -0.2
439,851 + MPMX19_06247 0.74 -1.7
439,851 + MPMX19_06247 0.74 -0.2
439,851 + MPMX19_06247 0.74 -1.1
439,851 + MPMX19_06247 0.74 -1.4
439,851 + MPMX19_06247 0.74 -0.7
439,851 + MPMX19_06247 0.74 -0.4
439,851 + MPMX19_06247 0.74 +0.0
439,851 + MPMX19_06247 0.74 -0.6
439,851 + MPMX19_06247 0.74 +0.0
439,851 + MPMX19_06247 0.74 +0.5
439,851 + MPMX19_06247 0.74 -0.4
439,851 + MPMX19_06247 0.74 -0.4
439,851 + MPMX19_06247 0.74 -1.0
439,852 - MPMX19_06247 0.74 -0.5
439,852 - MPMX19_06247 0.74 -0.6
439,852 - MPMX19_06247 0.74 +0.2
439,852 - MPMX19_06247 0.74 +0.2
439,852 - MPMX19_06247 0.74 -0.5
439,852 - MPMX19_06247 0.74 -1.4
439,852 - MPMX19_06247 0.74 -0.7
439,852 - MPMX19_06247 0.74 -1.3
439,852 - MPMX19_06247 0.74 -0.6
439,852 - MPMX19_06247 0.74 -0.6
439,962 + MPMX19_06247 0.83 +0.0
439,962 + MPMX19_06247 0.83 -0.1
439,963 - MPMX19_06247 0.83 -1.5
440,272 + -1.8
440,272 + -2.1
440,272 + -0.4
440,272 + -0.1
440,272 + -0.6
440,272 + -0.3
440,272 + -1.4
440,272 + -0.2
440,290 + +0.6
440,290 + -1.8
440,368 + +0.6
440,368 + +0.6
440,368 + +0.2
440,368 + -0.1
440,368 + -0.2
440,368 + -0.2
440,374 + -1.3
440,842 + MPMX19_06248 0.31 +1.2
440,842 + MPMX19_06248 0.31 +0.2
440,843 - MPMX19_06248 0.31 -0.8
440,843 - MPMX19_06248 0.31 +1.2
440,905 + MPMX19_06248 0.37 -0.2
440,905 + MPMX19_06248 0.37 +0.7
440,906 - MPMX19_06248 0.37 -0.0
441,184 + MPMX19_06248 0.66 +0.1
441,184 + MPMX19_06248 0.66 -0.8
441,184 + MPMX19_06248 0.66 -0.4
441,184 + MPMX19_06248 0.66 +0.2
441,184 + MPMX19_06248 0.66 +1.6
441,184 + MPMX19_06248 0.66 -1.9
441,184 + MPMX19_06248 0.66 +0.4
441,184 + MPMX19_06248 0.66 +0.6
441,184 + MPMX19_06248 0.66 +1.8
441,184 + MPMX19_06248 0.66 -0.5
441,184 + MPMX19_06248 0.66 -0.1
441,185 - MPMX19_06248 0.66 +0.9
441,185 - MPMX19_06248 0.66 +0.4
441,185 - MPMX19_06248 0.66 -1.0
441,185 - MPMX19_06248 0.66 -0.4
441,185 - MPMX19_06248 0.66 +0.0
441,185 - MPMX19_06248 0.66 -0.8
441,185 - MPMX19_06248 0.66 -1.3
441,185 - MPMX19_06248 0.66 -0.1
441,185 - MPMX19_06248 0.66 -0.3
441,185 - MPMX19_06248 0.66 -2.7
441,185 - MPMX19_06248 0.66 -1.1
441,185 - MPMX19_06248 0.66 -1.2
441,185 - MPMX19_06248 0.66 -2.6
441,185 - MPMX19_06248 0.66 -0.1
441,185 - MPMX19_06248 0.66 +1.1
441,185 - MPMX19_06248 0.66 +0.4
441,185 - MPMX19_06248 0.66 +0.5
441,185 - MPMX19_06248 0.66 -0.5
441,185 - MPMX19_06248 0.66 -0.9
441,185 - MPMX19_06248 0.66 -0.8
441,185 - MPMX19_06248 0.66 -2.0
441,185 - MPMX19_06248 0.66 +1.5
441,185 - MPMX19_06248 0.66 +0.1
441,185 - MPMX19_06248 0.66 -0.6
441,244 + MPMX19_06248 0.72 -0.2
441,244 + MPMX19_06248 0.72 +0.0
441,244 + MPMX19_06248 0.72 -1.7
441,244 + MPMX19_06248 0.72 -0.8
441,244 + MPMX19_06248 0.72 +2.8
441,244 + MPMX19_06248 0.72 -0.5
441,244 + MPMX19_06248 0.72 -0.8
441,244 + MPMX19_06248 0.72 +0.2
441,245 - MPMX19_06248 0.72 +0.8
441,245 - MPMX19_06248 0.72 +0.0
441,245 - MPMX19_06248 0.72 -2.0
441,245 - MPMX19_06248 0.72 +0.1
441,245 - MPMX19_06248 0.72 -1.2
441,245 - MPMX19_06248 0.72 -0.4
441,245 - MPMX19_06248 0.72 -1.1
441,246 + MPMX19_06248 0.72 -1.2
441,246 + MPMX19_06248 0.72 -0.0
441,246 + MPMX19_06248 0.72 +0.5
441,246 + MPMX19_06248 0.72 +0.8
441,246 + MPMX19_06248 0.72 +1.2
441,247 - MPMX19_06248 0.72 -1.5
441,247 - MPMX19_06248 0.72 +0.2
441,260 - MPMX19_06248 0.73 +0.2
441,894 + -0.3
441,895 - +0.8
441,897 + -0.1
441,898 - -0.8
441,972 + -0.4
442,324 + -0.4

Or see this region's nucleotide sequence