Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06239

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06237 and MPMX19_06238 are separated by 230 nucleotidesMPMX19_06238 and MPMX19_06239 overlap by 26 nucleotidesMPMX19_06239 and MPMX19_06240 overlap by 4 nucleotides MPMX19_06237: MPMX19_06237 - hypothetical protein, at 426,196 to 427,155 _06237 MPMX19_06238: MPMX19_06238 - L-aspartate/glutamate-specific racemase, at 427,386 to 428,111 _06238 MPMX19_06239: MPMX19_06239 - Transcriptional regulatory protein BtsR, at 428,086 to 428,814 _06239 MPMX19_06240: MPMX19_06240 - Sensor histidine kinase BtsS, at 428,811 to 430,508 _06240 Position (kb) 428 429Strain fitness (log2 ratio) -2 -1 0 1 2at 427.109 kb on + strandat 427.110 kb on - strandat 427.110 kb on - strandat 427.110 kb on - strandat 427.110 kb on - strandat 427.250 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.443 kb on + strandat 427.444 kb on - strandat 427.446 kb on + strandat 427.446 kb on + strandat 427.447 kb on - strandat 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.875 kb on + strand, within MPMX19_06238at 427.875 kb on + strand, within MPMX19_06238at 427.875 kb on + strand, within MPMX19_06238at 427.876 kb on - strand, within MPMX19_06238at 427.876 kb on - strand, within MPMX19_06238at 427.876 kb on - strand, within MPMX19_06238at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.514 kb on - strand, within MPMX19_06239at 428.514 kb on - strand, within MPMX19_06239at 428.514 kb on - strand, within MPMX19_06239at 428.514 kb on - strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.550 kb on - strand, within MPMX19_06239at 428.550 kb on - strand, within MPMX19_06239at 428.550 kb on - strand, within MPMX19_06239at 428.550 kb on - strand, within MPMX19_06239at 428.893 kb on + strandat 428.893 kb on + strandat 428.893 kb on + strandat 428.893 kb on + strandat 428.894 kb on - strandat 428.894 kb on - strandat 428.894 kb on - strandat 428.894 kb on - strandat 428.905 kb on + strandat 428.906 kb on - strandat 429.196 kb on + strand, within MPMX19_06240at 429.196 kb on + strand, within MPMX19_06240at 429.196 kb on + strand, within MPMX19_06240at 429.197 kb on - strand, within MPMX19_06240at 429.197 kb on - strand, within MPMX19_06240at 429.424 kb on + strand, within MPMX19_06240at 429.425 kb on - strand, within MPMX19_06240at 429.517 kb on + strand, within MPMX19_06240at 429.517 kb on + strand, within MPMX19_06240at 429.517 kb on + strand, within MPMX19_06240at 429.517 kb on + strand, within MPMX19_06240at 429.517 kb on + strand, within MPMX19_06240at 429.517 kb on + strand, within MPMX19_06240at 429.518 kb on - strand, within MPMX19_06240at 429.613 kb on + strand, within MPMX19_06240at 429.614 kb on - strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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427,109 + -0.2
427,110 - -0.1
427,110 - -0.4
427,110 - -0.7
427,110 - -0.2
427,250 + -0.6
427,274 + +0.2
427,274 + -0.2
427,274 + +1.0
427,274 + -0.6
427,274 + -1.8
427,274 + +0.8
427,274 + -0.3
427,275 - -0.8
427,275 - +0.5
427,275 - -2.0
427,275 - -1.0
427,275 - +0.8
427,275 - +1.2
427,275 - +1.6
427,443 + +0.4
427,444 - +0.1
427,446 + -2.6
427,446 + -0.5
427,447 - +0.2
427,791 + MPMX19_06238 0.56 -1.8
427,791 + MPMX19_06238 0.56 -0.4
427,791 + MPMX19_06238 0.56 -0.4
427,791 + MPMX19_06238 0.56 -0.9
427,791 + MPMX19_06238 0.56 -1.3
427,791 + MPMX19_06238 0.56 -0.1
427,791 + MPMX19_06238 0.56 -0.4
427,791 + MPMX19_06238 0.56 +0.4
427,791 + MPMX19_06238 0.56 +1.0
427,791 + MPMX19_06238 0.56 -0.9
427,791 + MPMX19_06238 0.56 -1.0
427,791 + MPMX19_06238 0.56 -0.3
427,791 + MPMX19_06238 0.56 -0.0
427,791 + MPMX19_06238 0.56 -1.4
427,792 - MPMX19_06238 0.56 -0.6
427,792 - MPMX19_06238 0.56 -0.7
427,792 - MPMX19_06238 0.56 +0.7
427,792 - MPMX19_06238 0.56 -2.0
427,792 - MPMX19_06238 0.56 +0.2
427,792 - MPMX19_06238 0.56 +0.1
427,792 - MPMX19_06238 0.56 +0.6
427,792 - MPMX19_06238 0.56 +0.6
427,792 - MPMX19_06238 0.56 -0.2
427,792 - MPMX19_06238 0.56 -0.6
427,792 - MPMX19_06238 0.56 -1.8
427,792 - MPMX19_06238 0.56 -1.3
427,792 - MPMX19_06238 0.56 +0.0
427,875 + MPMX19_06238 0.67 +0.0
427,875 + MPMX19_06238 0.67 -1.2
427,875 + MPMX19_06238 0.67 -1.5
427,876 - MPMX19_06238 0.67 +1.2
427,876 - MPMX19_06238 0.67 +0.6
427,876 - MPMX19_06238 0.67 -0.4
428,318 + MPMX19_06239 0.32 -0.1
428,318 + MPMX19_06239 0.32 +0.1
428,318 + MPMX19_06239 0.32 -0.1
428,318 + MPMX19_06239 0.32 +1.1
428,318 + MPMX19_06239 0.32 +0.1
428,318 + MPMX19_06239 0.32 -1.9
428,318 + MPMX19_06239 0.32 -1.0
428,318 + MPMX19_06239 0.32 -1.7
428,318 + MPMX19_06239 0.32 +0.3
428,319 - MPMX19_06239 0.32 -2.0
428,319 - MPMX19_06239 0.32 +1.9
428,319 - MPMX19_06239 0.32 +0.1
428,319 - MPMX19_06239 0.32 +0.4
428,319 - MPMX19_06239 0.32 +0.1
428,319 - MPMX19_06239 0.32 -1.6
428,319 - MPMX19_06239 0.32 -1.4
428,319 - MPMX19_06239 0.32 -0.9
428,319 - MPMX19_06239 0.32 -0.1
428,319 - MPMX19_06239 0.32 +0.2
428,319 - MPMX19_06239 0.32 +0.3
428,345 + MPMX19_06239 0.36 +0.3
428,345 + MPMX19_06239 0.36 +0.6
428,345 + MPMX19_06239 0.36 +0.9
428,345 + MPMX19_06239 0.36 -0.1
428,345 + MPMX19_06239 0.36 -1.9
428,345 + MPMX19_06239 0.36 -0.4
428,346 - MPMX19_06239 0.36 -1.6
428,346 - MPMX19_06239 0.36 -1.1
428,346 - MPMX19_06239 0.36 -2.1
428,346 - MPMX19_06239 0.36 -0.5
428,346 - MPMX19_06239 0.36 -1.0
428,346 - MPMX19_06239 0.36 -0.5
428,346 - MPMX19_06239 0.36 -0.1
428,346 - MPMX19_06239 0.36 -0.7
428,346 - MPMX19_06239 0.36 -0.6
428,346 - MPMX19_06239 0.36 +0.1
428,513 + MPMX19_06239 0.59 +0.2
428,513 + MPMX19_06239 0.59 -0.5
428,513 + MPMX19_06239 0.59 -0.8
428,513 + MPMX19_06239 0.59 -1.4
428,513 + MPMX19_06239 0.59 +0.0
428,513 + MPMX19_06239 0.59 -1.3
428,513 + MPMX19_06239 0.59 -1.5
428,513 + MPMX19_06239 0.59 -0.8
428,514 - MPMX19_06239 0.59 -1.4
428,514 - MPMX19_06239 0.59 -0.4
428,514 - MPMX19_06239 0.59 +0.9
428,514 - MPMX19_06239 0.59 -0.9
428,549 + MPMX19_06239 0.64 -1.9
428,549 + MPMX19_06239 0.64 -1.1
428,549 + MPMX19_06239 0.64 -0.2
428,549 + MPMX19_06239 0.64 -0.6
428,549 + MPMX19_06239 0.64 +0.4
428,550 - MPMX19_06239 0.64 +0.1
428,550 - MPMX19_06239 0.64 -1.0
428,550 - MPMX19_06239 0.64 +1.5
428,550 - MPMX19_06239 0.64 -0.6
428,893 + +0.0
428,893 + -1.0
428,893 + +0.3
428,893 + -0.0
428,894 - -1.4
428,894 - -1.5
428,894 - -1.7
428,894 - +0.8
428,905 + -0.9
428,906 - -0.8
429,196 + MPMX19_06240 0.23 -0.5
429,196 + MPMX19_06240 0.23 -0.6
429,196 + MPMX19_06240 0.23 +0.2
429,197 - MPMX19_06240 0.23 -0.6
429,197 - MPMX19_06240 0.23 +1.2
429,424 + MPMX19_06240 0.36 -0.5
429,425 - MPMX19_06240 0.36 -0.4
429,517 + MPMX19_06240 0.42 -0.1
429,517 + MPMX19_06240 0.42 +0.4
429,517 + MPMX19_06240 0.42 -0.3
429,517 + MPMX19_06240 0.42 +0.9
429,517 + MPMX19_06240 0.42 -0.5
429,517 + MPMX19_06240 0.42 -0.5
429,518 - MPMX19_06240 0.42 +0.2
429,613 + MPMX19_06240 0.47 -1.0
429,614 - MPMX19_06240 0.47 -0.1
429,637 + MPMX19_06240 0.49 +0.6
429,637 + MPMX19_06240 0.49 -1.0
429,637 + MPMX19_06240 0.49 -0.5
429,637 + MPMX19_06240 0.49 +0.1
429,637 + MPMX19_06240 0.49 -1.6
429,637 + MPMX19_06240 0.49 -1.0
429,637 + MPMX19_06240 0.49 -2.0
429,637 + MPMX19_06240 0.49 +0.0
429,637 + MPMX19_06240 0.49 +1.9
429,638 - MPMX19_06240 0.49 +0.2
429,638 - MPMX19_06240 0.49 -2.4
429,638 - MPMX19_06240 0.49 +0.5
429,638 - MPMX19_06240 0.49 +2.2
429,638 - MPMX19_06240 0.49 -1.8
429,638 - MPMX19_06240 0.49 -0.9
429,638 - MPMX19_06240 0.49 -0.8
429,638 - MPMX19_06240 0.49 -0.4
429,638 - MPMX19_06240 0.49 +1.4
429,638 - MPMX19_06240 0.49 -0.2
429,638 - MPMX19_06240 0.49 -0.3
429,638 - MPMX19_06240 0.49 -0.7
429,638 - MPMX19_06240 0.49 -0.4
429,638 - MPMX19_06240 0.49 -1.1

Or see this region's nucleotide sequence