Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06235

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06234 and MPMX19_06235 are separated by 149 nucleotidesMPMX19_06235 and MPMX19_06236 are separated by 175 nucleotidesMPMX19_06236 and MPMX19_06237 overlap by 53 nucleotides MPMX19_06234: MPMX19_06234 - hypothetical protein, at 423,636 to 424,832 _06234 MPMX19_06235: MPMX19_06235 - Glycine cleavage system transcriptional activator, at 424,982 to 425,878 _06235 MPMX19_06236: MPMX19_06236 - hypothetical protein, at 426,054 to 426,248 _06236 MPMX19_06237: MPMX19_06237 - hypothetical protein, at 426,196 to 427,155 _06237 Position (kb) 424 425 426Strain fitness (log2 ratio) -2 -1 0 1at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.412 kb on + strand, within MPMX19_06234at 424.412 kb on + strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.447 kb on + strand, within MPMX19_06234at 424.447 kb on + strand, within MPMX19_06234at 424.666 kb on + strand, within MPMX19_06234at 424.696 kb on + strand, within MPMX19_06234at 424.696 kb on + strand, within MPMX19_06234at 424.696 kb on + strand, within MPMX19_06234at 424.696 kb on + strand, within MPMX19_06234at 424.697 kb on - strand, within MPMX19_06234at 424.738 kb on + strandat 424.738 kb on + strandat 424.738 kb on + strandat 424.738 kb on + strandat 424.738 kb on + strandat 424.738 kb on + strandat 424.738 kb on + strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.754 kb on - strandat 424.896 kb on + strandat 424.919 kb on + strandat 424.920 kb on - strandat 424.922 kb on + strandat 424.940 kb on + strandat 425.045 kb on + strandat 425.045 kb on + strandat 425.045 kb on + strandat 425.045 kb on + strandat 425.045 kb on + strandat 425.046 kb on - strandat 425.046 kb on - strandat 425.046 kb on - strandat 425.046 kb on - strandat 425.324 kb on + strand, within MPMX19_06235at 425.325 kb on - strand, within MPMX19_06235at 425.643 kb on + strand, within MPMX19_06235at 425.643 kb on + strand, within MPMX19_06235at 425.644 kb on - strand, within MPMX19_06235at 425.644 kb on - strand, within MPMX19_06235at 425.644 kb on - strand, within MPMX19_06235at 425.787 kb on - strand, within MPMX19_06235at 425.787 kb on - strand, within MPMX19_06235at 425.787 kb on - strand, within MPMX19_06235at 426.004 kb on + strandat 426.005 kb on - strandat 426.005 kb on - strandat 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.130 kb on - strand, within MPMX19_06236at 426.130 kb on - strand, within MPMX19_06236at 426.130 kb on - strand, within MPMX19_06236at 426.335 kb on + strand, within MPMX19_06237at 426.335 kb on + strand, within MPMX19_06237at 426.380 kb on + strand, within MPMX19_06237at 426.380 kb on + strand, within MPMX19_06237at 426.380 kb on + strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.383 kb on + strand, within MPMX19_06237at 426.383 kb on + strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.426 kb on - strand, within MPMX19_06237at 426.455 kb on + strand, within MPMX19_06237at 426.455 kb on + strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.558 kb on - strand, within MPMX19_06237at 426.558 kb on - strand, within MPMX19_06237at 426.641 kb on + strand, within MPMX19_06237at 426.642 kb on - strand, within MPMX19_06237

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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424,162 + MPMX19_06234 0.44 +0.2
424,162 + MPMX19_06234 0.44 -1.6
424,162 + MPMX19_06234 0.44 -0.7
424,162 + MPMX19_06234 0.44 -0.9
424,162 + MPMX19_06234 0.44 -1.0
424,162 + MPMX19_06234 0.44 -0.1
424,162 + MPMX19_06234 0.44 -0.8
424,162 + MPMX19_06234 0.44 -2.0
424,162 + MPMX19_06234 0.44 +0.2
424,162 + MPMX19_06234 0.44 +0.2
424,163 - MPMX19_06234 0.44 +0.2
424,163 - MPMX19_06234 0.44 -1.1
424,163 - MPMX19_06234 0.44 -0.5
424,163 - MPMX19_06234 0.44 -0.1
424,163 - MPMX19_06234 0.44 +1.2
424,163 - MPMX19_06234 0.44 +0.5
424,412 + MPMX19_06234 0.65 +0.0
424,412 + MPMX19_06234 0.65 -1.4
424,413 - MPMX19_06234 0.65 -2.7
424,413 - MPMX19_06234 0.65 -1.5
424,413 - MPMX19_06234 0.65 -1.7
424,413 - MPMX19_06234 0.65 +0.6
424,413 - MPMX19_06234 0.65 -0.4
424,413 - MPMX19_06234 0.65 -0.5
424,413 - MPMX19_06234 0.65 -1.3
424,413 - MPMX19_06234 0.65 -0.2
424,413 - MPMX19_06234 0.65 +0.8
424,413 - MPMX19_06234 0.65 -0.8
424,414 + MPMX19_06234 0.65 -0.8
424,414 + MPMX19_06234 0.65 -0.7
424,414 + MPMX19_06234 0.65 -0.3
424,414 + MPMX19_06234 0.65 -0.6
424,414 + MPMX19_06234 0.65 -0.5
424,414 + MPMX19_06234 0.65 +0.2
424,414 + MPMX19_06234 0.65 -1.5
424,414 + MPMX19_06234 0.65 -2.1
424,414 + MPMX19_06234 0.65 -0.6
424,414 + MPMX19_06234 0.65 -0.5
424,414 + MPMX19_06234 0.65 -0.6
424,414 + MPMX19_06234 0.65 -0.8
424,415 - MPMX19_06234 0.65 -0.4
424,415 - MPMX19_06234 0.65 -0.5
424,415 - MPMX19_06234 0.65 +0.7
424,415 - MPMX19_06234 0.65 -0.6
424,415 - MPMX19_06234 0.65 -0.9
424,415 - MPMX19_06234 0.65 +0.6
424,415 - MPMX19_06234 0.65 -0.3
424,415 - MPMX19_06234 0.65 -1.0
424,415 - MPMX19_06234 0.65 -0.6
424,415 - MPMX19_06234 0.65 -1.3
424,415 - MPMX19_06234 0.65 -0.7
424,415 - MPMX19_06234 0.65 -1.0
424,415 - MPMX19_06234 0.65 +0.0
424,415 - MPMX19_06234 0.65 -1.0
424,415 - MPMX19_06234 0.65 +0.2
424,415 - MPMX19_06234 0.65 -0.3
424,415 - MPMX19_06234 0.65 +0.3
424,415 - MPMX19_06234 0.65 -2.0
424,447 + MPMX19_06234 0.68 +0.6
424,447 + MPMX19_06234 0.68 -1.5
424,666 + MPMX19_06234 0.86 +1.5
424,696 + MPMX19_06234 0.89 +0.6
424,696 + MPMX19_06234 0.89 -0.0
424,696 + MPMX19_06234 0.89 -0.7
424,696 + MPMX19_06234 0.89 -1.7
424,697 - MPMX19_06234 0.89 -0.1
424,738 + -0.1
424,738 + +0.4
424,738 + -2.5
424,738 + -2.6
424,738 + -0.6
424,738 + -1.0
424,738 + -0.4
424,739 - -0.3
424,739 - -0.2
424,739 - -0.4
424,739 - +0.4
424,739 - -0.1
424,739 - -1.4
424,739 - -0.8
424,739 - +0.3
424,739 - +0.2
424,754 - +1.2
424,896 + +0.6
424,919 + -2.0
424,920 - -0.8
424,922 + +0.3
424,940 + -0.6
425,045 + -0.4
425,045 + -0.3
425,045 + +0.7
425,045 + -0.7
425,045 + +0.0
425,046 - -2.7
425,046 - -1.3
425,046 - -0.3
425,046 - +1.0
425,324 + MPMX19_06235 0.38 +0.3
425,325 - MPMX19_06235 0.38 -0.1
425,643 + MPMX19_06235 0.74 +0.3
425,643 + MPMX19_06235 0.74 -0.0
425,644 - MPMX19_06235 0.74 -1.3
425,644 - MPMX19_06235 0.74 +1.2
425,644 - MPMX19_06235 0.74 -2.0
425,787 - MPMX19_06235 0.90 -0.5
425,787 - MPMX19_06235 0.90 -0.8
425,787 - MPMX19_06235 0.90 +1.5
426,004 + -2.7
426,005 - -1.6
426,005 - -1.4
426,129 + MPMX19_06236 0.38 -1.1
426,129 + MPMX19_06236 0.38 -1.1
426,129 + MPMX19_06236 0.38 -0.6
426,129 + MPMX19_06236 0.38 -1.0
426,129 + MPMX19_06236 0.38 -0.9
426,129 + MPMX19_06236 0.38 -0.2
426,130 - MPMX19_06236 0.39 -0.5
426,130 - MPMX19_06236 0.39 -1.1
426,130 - MPMX19_06236 0.39 -1.0
426,335 + MPMX19_06237 0.14 -0.1
426,335 + MPMX19_06237 0.14 +1.4
426,380 + MPMX19_06237 0.19 +0.6
426,380 + MPMX19_06237 0.19 -1.5
426,380 + MPMX19_06237 0.19 +0.9
426,381 - MPMX19_06237 0.19 -1.2
426,381 - MPMX19_06237 0.19 -2.4
426,381 - MPMX19_06237 0.19 -0.3
426,381 - MPMX19_06237 0.19 -1.4
426,381 - MPMX19_06237 0.19 -0.1
426,383 + MPMX19_06237 0.19 -1.0
426,383 + MPMX19_06237 0.19 -2.2
426,384 - MPMX19_06237 0.20 +0.8
426,384 - MPMX19_06237 0.20 -0.3
426,384 - MPMX19_06237 0.20 +0.1
426,384 - MPMX19_06237 0.20 +0.2
426,384 - MPMX19_06237 0.20 -0.3
426,425 + MPMX19_06237 0.24 -1.0
426,425 + MPMX19_06237 0.24 -0.6
426,425 + MPMX19_06237 0.24 +0.6
426,425 + MPMX19_06237 0.24 -1.7
426,426 - MPMX19_06237 0.24 +0.4
426,455 + MPMX19_06237 0.27 +0.9
426,455 + MPMX19_06237 0.27 +0.2
426,456 - MPMX19_06237 0.27 -0.6
426,456 - MPMX19_06237 0.27 +0.5
426,456 - MPMX19_06237 0.27 -0.7
426,456 - MPMX19_06237 0.27 -0.6
426,456 - MPMX19_06237 0.27 -1.3
426,456 - MPMX19_06237 0.27 +0.1
426,456 - MPMX19_06237 0.27 -2.0
426,456 - MPMX19_06237 0.27 +0.6
426,456 - MPMX19_06237 0.27 +0.8
426,456 - MPMX19_06237 0.27 -0.4
426,456 - MPMX19_06237 0.27 -0.4
426,456 - MPMX19_06237 0.27 -0.7
426,536 + MPMX19_06237 0.35 +0.6
426,536 + MPMX19_06237 0.35 -0.3
426,536 + MPMX19_06237 0.35 -0.8
426,536 + MPMX19_06237 0.35 -0.1
426,536 + MPMX19_06237 0.35 -1.9
426,537 - MPMX19_06237 0.36 -0.7
426,537 - MPMX19_06237 0.36 +0.5
426,537 - MPMX19_06237 0.36 +0.6
426,537 - MPMX19_06237 0.36 -0.6
426,537 - MPMX19_06237 0.36 -1.0
426,537 - MPMX19_06237 0.36 -0.8
426,537 - MPMX19_06237 0.36 -1.3
426,537 - MPMX19_06237 0.36 -0.6
426,537 - MPMX19_06237 0.36 -0.7
426,537 - MPMX19_06237 0.36 -0.5
426,557 + MPMX19_06237 0.38 -1.9
426,557 + MPMX19_06237 0.38 -0.1
426,557 + MPMX19_06237 0.38 +0.6
426,557 + MPMX19_06237 0.38 +0.3
426,558 - MPMX19_06237 0.38 -1.1
426,558 - MPMX19_06237 0.38 -1.3
426,641 + MPMX19_06237 0.46 +0.3
426,642 - MPMX19_06237 0.46 -0.3

Or see this region's nucleotide sequence