Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06230 and MPMX19_06231 are separated by 611 nucleotides MPMX19_06231 and MPMX19_06232 are separated by 88 nucleotides
MPMX19_06230: MPMX19_06230 - hypothetical protein, at 418,002 to 418,658
_06230
MPMX19_06231: MPMX19_06231 - Ribonuclease J, at 419,270 to 420,790
_06231
MPMX19_06232: MPMX19_06232 - Pyruvate/proton symporter BtsT, at 420,879 to 422,684
_06232
Position (kb) 419
420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 418.281 kb on - strand, within MPMX19_06230 at 418.281 kb on - strand, within MPMX19_06230 at 418.281 kb on - strand, within MPMX19_06230 at 418.513 kb on + strand, within MPMX19_06230 at 418.522 kb on + strand, within MPMX19_06230 at 418.613 kb on + strand at 418.614 kb on - strand at 418.662 kb on + strand at 418.662 kb on + strand at 418.679 kb on + strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.725 kb on - strand at 418.735 kb on + strand at 418.736 kb on - strand at 418.736 kb on - strand at 418.736 kb on - strand at 418.736 kb on - strand at 418.809 kb on + strand at 418.809 kb on + strand at 418.809 kb on + strand at 418.809 kb on + strand at 418.810 kb on - strand at 418.810 kb on - strand at 418.810 kb on - strand at 418.811 kb on + strand at 418.811 kb on + strand at 418.812 kb on - strand at 418.812 kb on - strand at 418.823 kb on + strand at 418.823 kb on + strand at 418.830 kb on - strand at 418.968 kb on + strand at 418.968 kb on + strand at 418.968 kb on + strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.986 kb on + strand at 418.986 kb on + strand at 418.986 kb on + strand at 418.986 kb on + strand at 418.987 kb on - strand at 418.987 kb on - strand at 419.080 kb on - strand at 419.116 kb on + strand at 419.116 kb on + strand at 419.116 kb on + strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.247 kb on + strand at 419.247 kb on + strand at 419.247 kb on + strand at 419.247 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.478 kb on - strand, within MPMX19_06231 at 419.478 kb on - strand, within MPMX19_06231 at 419.478 kb on - strand, within MPMX19_06231 at 419.635 kb on + strand, within MPMX19_06231 at 419.681 kb on + strand, within MPMX19_06231 at 419.681 kb on + strand, within MPMX19_06231 at 419.681 kb on + strand, within MPMX19_06231 at 419.681 kb on + strand, within MPMX19_06231 at 419.681 kb on + strand, within MPMX19_06231 at 419.681 kb on + strand, within MPMX19_06231 at 419.682 kb on - strand, within MPMX19_06231 at 419.682 kb on - strand, within MPMX19_06231 at 419.682 kb on - strand, within MPMX19_06231 at 419.682 kb on - strand, within MPMX19_06231 at 419.682 kb on - strand, within MPMX19_06231 at 419.682 kb on - strand, within MPMX19_06231 at 419.682 kb on - strand, within MPMX19_06231 at 420.212 kb on + strand, within MPMX19_06231 at 420.212 kb on + strand, within MPMX19_06231 at 420.212 kb on + strand, within MPMX19_06231 at 420.530 kb on + strand, within MPMX19_06231 at 420.530 kb on + strand, within MPMX19_06231 at 420.530 kb on + strand, within MPMX19_06231 at 420.530 kb on + strand, within MPMX19_06231 at 420.530 kb on + strand, within MPMX19_06231 at 420.530 kb on + strand, within MPMX19_06231 at 420.530 kb on + strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.863 kb on + strand at 420.864 kb on - strand at 421.018 kb on + strand at 421.018 kb on + strand at 421.018 kb on + strand at 421.018 kb on + strand at 421.018 kb on + strand at 421.019 kb on - strand at 421.019 kb on - strand at 421.019 kb on - strand at 421.019 kb on - strand at 421.019 kb on - strand at 421.019 kb on - strand at 421.019 kb on - strand at 421.042 kb on + strand at 421.042 kb on + strand at 421.042 kb on + strand at 421.043 kb on - strand at 421.043 kb on - strand at 421.093 kb on + strand, within MPMX19_06232 at 421.093 kb on + strand, within MPMX19_06232 at 421.093 kb on + strand, within MPMX19_06232 at 421.094 kb on - strand, within MPMX19_06232 at 421.094 kb on - strand, within MPMX19_06232 at 421.094 kb on - strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.249 kb on + strand, within MPMX19_06232 at 421.249 kb on + strand, within MPMX19_06232 at 421.249 kb on + strand, within MPMX19_06232 at 421.249 kb on + strand, within MPMX19_06232 at 421.249 kb on + strand, within MPMX19_06232 at 421.250 kb on - strand, within MPMX19_06232 at 421.250 kb on - strand, within MPMX19_06232 at 421.250 kb on - strand, within MPMX19_06232 at 421.250 kb on - strand, within MPMX19_06232 at 421.250 kb on - strand, within MPMX19_06232 at 421.250 kb on - strand, within MPMX19_06232 at 421.250 kb on - strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.325 kb on - strand, within MPMX19_06232 at 421.325 kb on - strand, within MPMX19_06232 at 421.325 kb on - strand, within MPMX19_06232 at 421.325 kb on - strand, within MPMX19_06232 at 421.325 kb on - strand, within MPMX19_06232 at 421.325 kb on - strand, within MPMX19_06232 at 421.325 kb on - strand, within MPMX19_06232 at 421.354 kb on + strand, within MPMX19_06232 at 421.432 kb on + strand, within MPMX19_06232 at 421.432 kb on + strand, within MPMX19_06232 at 421.432 kb on + strand, within MPMX19_06232 at 421.432 kb on + strand, within MPMX19_06232 at 421.433 kb on - strand, within MPMX19_06232 at 421.433 kb on - strand, within MPMX19_06232 at 421.433 kb on - strand, within MPMX19_06232 at 421.520 kb on - strand, within MPMX19_06232 at 421.520 kb on - strand, within MPMX19_06232 at 421.615 kb on + strand, within MPMX19_06232 at 421.615 kb on + strand, within MPMX19_06232 at 421.616 kb on - strand, within MPMX19_06232 at 421.616 kb on - strand, within MPMX19_06232 at 421.616 kb on - strand, within MPMX19_06232 at 421.616 kb on - strand, within MPMX19_06232
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 418,281 - MPMX19_06230 0.42 -0.7 418,281 - MPMX19_06230 0.42 +0.6 418,281 - MPMX19_06230 0.42 -0.4 418,513 + MPMX19_06230 0.78 -1.2 418,522 + MPMX19_06230 0.79 -0.6 418,613 + +0.6 418,614 - -0.6 418,662 + -0.3 418,662 + -0.0 418,679 + -0.5 418,680 - -2.1 418,680 - +1.0 418,680 - -2.1 418,680 - -0.6 418,680 - -0.7 418,725 - +0.1 418,735 + -1.3 418,736 - -0.5 418,736 - -1.7 418,736 - +1.1 418,736 - +0.1 418,809 + +0.2 418,809 + +0.0 418,809 + +1.6 418,809 + -0.3 418,810 - +0.6 418,810 - +1.9 418,810 - +1.1 418,811 + -0.8 418,811 + -0.8 418,812 - -0.2 418,812 - -0.5 418,823 + -1.6 418,823 + +0.5 418,830 - -1.0 418,968 + -0.5 418,968 + -1.4 418,968 + +0.4 418,969 - -1.5 418,969 - -0.1 418,969 - +1.5 418,969 - -0.9 418,969 - -1.0 418,969 - -1.0 418,986 + -0.4 418,986 + +1.5 418,986 + -0.1 418,986 + -0.6 418,987 - -0.6 418,987 - -1.1 419,080 - +0.5 419,116 + -0.4 419,116 + -1.3 419,116 + -0.9 419,117 - +0.6 419,117 - -0.6 419,117 - +1.0 419,117 - -0.9 419,117 - +0.4 419,117 - -1.0 419,117 - +0.0 419,117 - -1.1 419,247 + +0.2 419,247 + -1.3 419,247 + +0.2 419,247 + +3.2 419,258 + -0.6 419,258 + -0.7 419,258 + -0.7 419,258 + +2.0 419,258 + +0.2 419,259 - +0.9 419,259 - -0.0 419,259 - -2.0 419,259 - +0.7 419,259 - -0.4 419,477 + MPMX19_06231 0.14 +0.6 419,477 + MPMX19_06231 0.14 -1.5 419,477 + MPMX19_06231 0.14 -0.3 419,477 + MPMX19_06231 0.14 +0.7 419,477 + MPMX19_06231 0.14 -0.8 419,477 + MPMX19_06231 0.14 -1.1 419,477 + MPMX19_06231 0.14 -0.8 419,478 - MPMX19_06231 0.14 -1.2 419,478 - MPMX19_06231 0.14 -0.2 419,478 - MPMX19_06231 0.14 +0.4 419,635 + MPMX19_06231 0.24 -1.6 419,681 + MPMX19_06231 0.27 -0.6 419,681 + MPMX19_06231 0.27 -1.1 419,681 + MPMX19_06231 0.27 -1.8 419,681 + MPMX19_06231 0.27 +1.2 419,681 + MPMX19_06231 0.27 +1.0 419,681 + MPMX19_06231 0.27 -2.3 419,682 - MPMX19_06231 0.27 -0.1 419,682 - MPMX19_06231 0.27 -0.6 419,682 - MPMX19_06231 0.27 -0.7 419,682 - MPMX19_06231 0.27 +0.2 419,682 - MPMX19_06231 0.27 -0.8 419,682 - MPMX19_06231 0.27 -0.4 419,682 - MPMX19_06231 0.27 +1.5 420,212 + MPMX19_06231 0.62 -1.1 420,212 + MPMX19_06231 0.62 +0.6 420,212 + MPMX19_06231 0.62 -0.9 420,530 + MPMX19_06231 0.83 -0.3 420,530 + MPMX19_06231 0.83 -1.2 420,530 + MPMX19_06231 0.83 -1.0 420,530 + MPMX19_06231 0.83 -0.9 420,530 + MPMX19_06231 0.83 +0.9 420,530 + MPMX19_06231 0.83 -0.8 420,530 + MPMX19_06231 0.83 -1.6 420,531 - MPMX19_06231 0.83 +0.0 420,531 - MPMX19_06231 0.83 -2.1 420,531 - MPMX19_06231 0.83 +0.8 420,531 - MPMX19_06231 0.83 +0.7 420,531 - MPMX19_06231 0.83 -1.5 420,531 - MPMX19_06231 0.83 -0.9 420,531 - MPMX19_06231 0.83 -0.3 420,531 - MPMX19_06231 0.83 -0.3 420,583 + MPMX19_06231 0.86 -0.5 420,583 + MPMX19_06231 0.86 -1.0 420,583 + MPMX19_06231 0.86 -1.6 420,583 + MPMX19_06231 0.86 +1.6 420,583 + MPMX19_06231 0.86 +0.5 420,583 + MPMX19_06231 0.86 -2.8 420,583 + MPMX19_06231 0.86 +0.4 420,583 + MPMX19_06231 0.86 -0.3 420,583 + MPMX19_06231 0.86 +0.0 420,584 - MPMX19_06231 0.86 +0.5 420,584 - MPMX19_06231 0.86 -2.7 420,584 - MPMX19_06231 0.86 +0.9 420,584 - MPMX19_06231 0.86 -1.5 420,584 - MPMX19_06231 0.86 -1.1 420,584 - MPMX19_06231 0.86 -1.6 420,584 - MPMX19_06231 0.86 -1.6 420,584 - MPMX19_06231 0.86 -0.5 420,584 - MPMX19_06231 0.86 +1.6 420,863 + -0.4 420,864 - +0.2 421,018 + -0.3 421,018 + +0.5 421,018 + +0.8 421,018 + -0.4 421,018 + +0.2 421,019 - -0.4 421,019 - -0.6 421,019 - -0.2 421,019 - -2.1 421,019 - +0.5 421,019 - +0.4 421,019 - -0.6 421,042 + -0.4 421,042 + +0.6 421,042 + +0.9 421,043 - -0.5 421,043 - -0.0 421,093 + MPMX19_06232 0.12 -0.5 421,093 + MPMX19_06232 0.12 -0.6 421,093 + MPMX19_06232 0.12 +0.6 421,094 - MPMX19_06232 0.12 -0.7 421,094 - MPMX19_06232 0.12 -1.5 421,094 - MPMX19_06232 0.12 +0.8 421,123 + MPMX19_06232 0.14 -1.0 421,123 + MPMX19_06232 0.14 +0.2 421,123 + MPMX19_06232 0.14 -0.1 421,123 + MPMX19_06232 0.14 -1.3 421,123 + MPMX19_06232 0.14 -0.1 421,123 + MPMX19_06232 0.14 +0.7 421,123 + MPMX19_06232 0.14 -1.6 421,123 + MPMX19_06232 0.14 -0.8 421,123 + MPMX19_06232 0.14 +1.9 421,123 + MPMX19_06232 0.14 +0.5 421,123 + MPMX19_06232 0.14 +1.0 421,123 + MPMX19_06232 0.14 +0.4 421,123 + MPMX19_06232 0.14 +0.9 421,123 + MPMX19_06232 0.14 -0.1 421,123 + MPMX19_06232 0.14 -0.7 421,124 - MPMX19_06232 0.14 -0.1 421,124 - MPMX19_06232 0.14 +0.4 421,124 - MPMX19_06232 0.14 -0.2 421,124 - MPMX19_06232 0.14 -1.4 421,124 - MPMX19_06232 0.14 -0.9 421,124 - MPMX19_06232 0.14 -1.6 421,124 - MPMX19_06232 0.14 +1.3 421,124 - MPMX19_06232 0.14 -0.1 421,124 - MPMX19_06232 0.14 -1.5 421,124 - MPMX19_06232 0.14 -0.1 421,124 - MPMX19_06232 0.14 -1.0 421,124 - MPMX19_06232 0.14 -1.1 421,124 - MPMX19_06232 0.14 -1.6 421,124 - MPMX19_06232 0.14 -0.1 421,124 - MPMX19_06232 0.14 -0.4 421,124 - MPMX19_06232 0.14 +0.6 421,124 - MPMX19_06232 0.14 +0.6 421,249 + MPMX19_06232 0.20 +0.1 421,249 + MPMX19_06232 0.20 -2.0 421,249 + MPMX19_06232 0.20 -1.0 421,249 + MPMX19_06232 0.20 -0.3 421,249 + MPMX19_06232 0.20 -1.0 421,250 - MPMX19_06232 0.21 -0.1 421,250 - MPMX19_06232 0.21 -1.3 421,250 - MPMX19_06232 0.21 +0.1 421,250 - MPMX19_06232 0.21 -1.9 421,250 - MPMX19_06232 0.21 -1.6 421,250 - MPMX19_06232 0.21 +1.0 421,250 - MPMX19_06232 0.21 -1.0 421,324 + MPMX19_06232 0.25 -2.2 421,324 + MPMX19_06232 0.25 +0.2 421,324 + MPMX19_06232 0.25 -1.4 421,324 + MPMX19_06232 0.25 -0.6 421,324 + MPMX19_06232 0.25 -1.1 421,324 + MPMX19_06232 0.25 +0.1 421,324 + MPMX19_06232 0.25 -0.3 421,324 + MPMX19_06232 0.25 -1.0 421,324 + MPMX19_06232 0.25 -0.0 421,324 + MPMX19_06232 0.25 -1.1 421,325 - MPMX19_06232 0.25 -0.6 421,325 - MPMX19_06232 0.25 -0.1 421,325 - MPMX19_06232 0.25 -0.7 421,325 - MPMX19_06232 0.25 -1.0 421,325 - MPMX19_06232 0.25 +1.4 421,325 - MPMX19_06232 0.25 -0.8 421,325 - MPMX19_06232 0.25 +0.5 421,354 + MPMX19_06232 0.26 +1.0 421,432 + MPMX19_06232 0.31 +0.2 421,432 + MPMX19_06232 0.31 -1.1 421,432 + MPMX19_06232 0.31 -2.7 421,432 + MPMX19_06232 0.31 +1.6 421,433 - MPMX19_06232 0.31 -0.3 421,433 - MPMX19_06232 0.31 -1.8 421,433 - MPMX19_06232 0.31 -0.3 421,520 - MPMX19_06232 0.35 +0.6 421,520 - MPMX19_06232 0.35 -1.5 421,615 + MPMX19_06232 0.41 -0.7 421,615 + MPMX19_06232 0.41 -2.1 421,616 - MPMX19_06232 0.41 -1.0 421,616 - MPMX19_06232 0.41 -0.3 421,616 - MPMX19_06232 0.41 +0.0 421,616 - MPMX19_06232 0.41 -2.5
Or see this region's nucleotide sequence