Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06203

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06201 and MPMX19_06202 overlap by 4 nucleotidesMPMX19_06202 and MPMX19_06203 are separated by 4 nucleotidesMPMX19_06203 and MPMX19_06204 overlap by 11 nucleotidesMPMX19_06204 and MPMX19_06205 are separated by 186 nucleotides MPMX19_06201: MPMX19_06201 - hypothetical protein, at 388,966 to 389,757 _06201 MPMX19_06202: MPMX19_06202 - hypothetical protein, at 389,754 to 390,149 _06202 MPMX19_06203: MPMX19_06203 - flagellum biosynthesis repressor protein FlbT, at 390,154 to 390,639 _06203 MPMX19_06204: MPMX19_06204 - hypothetical protein, at 390,629 to 391,033 _06204 MPMX19_06205: MPMX19_06205 - hypothetical protein, at 391,220 to 392,464 _06205 Position (kb) 390 391Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 389.243 kb on + strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.243 kb on + strand, within MPMX19_06201at 389.244 kb on - strand, within MPMX19_06201at 389.244 kb on - strand, within MPMX19_06201at 389.244 kb on - strand, within MPMX19_06201at 389.244 kb on - strand, within MPMX19_06201at 389.282 kb on + strand, within MPMX19_06201at 389.283 kb on - strand, within MPMX19_06201at 389.283 kb on - strand, within MPMX19_06201at 389.283 kb on - strand, within MPMX19_06201at 389.318 kb on + strand, within MPMX19_06201at 389.318 kb on + strand, within MPMX19_06201at 389.319 kb on - strand, within MPMX19_06201at 389.381 kb on + strand, within MPMX19_06201at 389.381 kb on + strand, within MPMX19_06201at 389.381 kb on + strand, within MPMX19_06201at 389.381 kb on + strand, within MPMX19_06201at 389.381 kb on + strand, within MPMX19_06201at 389.381 kb on + strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.382 kb on - strand, within MPMX19_06201at 389.504 kb on + strand, within MPMX19_06201at 389.504 kb on + strand, within MPMX19_06201at 389.505 kb on - strand, within MPMX19_06201at 389.505 kb on - strand, within MPMX19_06201at 389.505 kb on - strand, within MPMX19_06201at 389.660 kb on + strand, within MPMX19_06201at 389.660 kb on + strand, within MPMX19_06201at 389.660 kb on + strand, within MPMX19_06201at 389.660 kb on + strand, within MPMX19_06201at 389.660 kb on + strand, within MPMX19_06201at 389.661 kb on - strand, within MPMX19_06201at 389.661 kb on - strand, within MPMX19_06201at 389.661 kb on - strand, within MPMX19_06201at 389.661 kb on - strand, within MPMX19_06201at 389.708 kb on + strandat 389.709 kb on - strandat 389.709 kb on - strandat 389.709 kb on - strandat 389.709 kb on - strandat 389.837 kb on - strand, within MPMX19_06202at 389.893 kb on + strand, within MPMX19_06202at 389.893 kb on + strand, within MPMX19_06202at 389.894 kb on - strand, within MPMX19_06202at 389.894 kb on - strand, within MPMX19_06202at 390.217 kb on + strand, within MPMX19_06203at 390.217 kb on + strand, within MPMX19_06203at 390.218 kb on - strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.314 kb on + strand, within MPMX19_06203at 390.314 kb on + strand, within MPMX19_06203at 390.314 kb on + strand, within MPMX19_06203at 390.315 kb on - strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.471 kb on - strand, within MPMX19_06203at 390.471 kb on - strand, within MPMX19_06203at 390.471 kb on - strand, within MPMX19_06203at 390.471 kb on - strand, within MPMX19_06203at 390.560 kb on + strand, within MPMX19_06203at 390.561 kb on - strand, within MPMX19_06203at 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.639 kb on + strandat 390.639 kb on + strandat 390.640 kb on - strandat 390.640 kb on - strandat 390.640 kb on - strandat 390.640 kb on - strandat 390.640 kb on - strandat 391.017 kb on + strandat 391.018 kb on - strandat 391.221 kb on + strandat 391.221 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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389,243 + MPMX19_06201 0.35 +1.2
389,243 + MPMX19_06201 0.35 -0.3
389,243 + MPMX19_06201 0.35 -0.4
389,243 + MPMX19_06201 0.35 +0.1
389,243 + MPMX19_06201 0.35 -1.0
389,243 + MPMX19_06201 0.35 +0.5
389,243 + MPMX19_06201 0.35 -0.5
389,243 + MPMX19_06201 0.35 -0.6
389,244 - MPMX19_06201 0.35 +0.2
389,244 - MPMX19_06201 0.35 +1.4
389,244 - MPMX19_06201 0.35 -1.7
389,244 - MPMX19_06201 0.35 -1.5
389,282 + MPMX19_06201 0.40 +0.7
389,283 - MPMX19_06201 0.40 -0.4
389,283 - MPMX19_06201 0.40 -0.8
389,283 - MPMX19_06201 0.40 -1.6
389,318 + MPMX19_06201 0.44 -1.0
389,318 + MPMX19_06201 0.44 +0.1
389,319 - MPMX19_06201 0.45 -0.3
389,381 + MPMX19_06201 0.52 +1.4
389,381 + MPMX19_06201 0.52 -0.5
389,381 + MPMX19_06201 0.52 -0.4
389,381 + MPMX19_06201 0.52 +0.4
389,381 + MPMX19_06201 0.52 -0.1
389,381 + MPMX19_06201 0.52 -2.1
389,382 - MPMX19_06201 0.53 -0.7
389,382 - MPMX19_06201 0.53 -0.4
389,382 - MPMX19_06201 0.53 +0.3
389,382 - MPMX19_06201 0.53 -1.1
389,382 - MPMX19_06201 0.53 -0.8
389,382 - MPMX19_06201 0.53 +0.1
389,382 - MPMX19_06201 0.53 +0.8
389,382 - MPMX19_06201 0.53 -0.2
389,382 - MPMX19_06201 0.53 +0.9
389,382 - MPMX19_06201 0.53 -1.1
389,382 - MPMX19_06201 0.53 -1.5
389,504 + MPMX19_06201 0.68 -2.1
389,504 + MPMX19_06201 0.68 +1.4
389,505 - MPMX19_06201 0.68 -1.0
389,505 - MPMX19_06201 0.68 +0.0
389,505 - MPMX19_06201 0.68 -0.8
389,660 + MPMX19_06201 0.88 +1.4
389,660 + MPMX19_06201 0.88 -1.4
389,660 + MPMX19_06201 0.88 +0.2
389,660 + MPMX19_06201 0.88 -0.3
389,660 + MPMX19_06201 0.88 +0.2
389,661 - MPMX19_06201 0.88 +0.8
389,661 - MPMX19_06201 0.88 -0.5
389,661 - MPMX19_06201 0.88 -0.4
389,661 - MPMX19_06201 0.88 +0.0
389,708 + -0.9
389,709 - +0.7
389,709 - +0.9
389,709 - -1.7
389,709 - -0.0
389,837 - MPMX19_06202 0.21 +0.5
389,893 + MPMX19_06202 0.35 +1.2
389,893 + MPMX19_06202 0.35 -1.5
389,894 - MPMX19_06202 0.35 -1.3
389,894 - MPMX19_06202 0.35 +0.4
390,217 + MPMX19_06203 0.13 +1.3
390,217 + MPMX19_06203 0.13 +0.2
390,218 - MPMX19_06203 0.13 -1.3
390,275 + MPMX19_06203 0.25 -1.0
390,275 + MPMX19_06203 0.25 -0.7
390,275 + MPMX19_06203 0.25 +1.1
390,275 + MPMX19_06203 0.25 -0.2
390,275 + MPMX19_06203 0.25 -0.0
390,275 + MPMX19_06203 0.25 -0.7
390,275 + MPMX19_06203 0.25 +0.5
390,275 + MPMX19_06203 0.25 +0.3
390,275 + MPMX19_06203 0.25 -1.7
390,275 + MPMX19_06203 0.25 -0.3
390,275 + MPMX19_06203 0.25 -1.3
390,275 + MPMX19_06203 0.25 +0.7
390,275 + MPMX19_06203 0.25 -0.5
390,275 + MPMX19_06203 0.25 -1.3
390,275 + MPMX19_06203 0.25 +0.7
390,276 - MPMX19_06203 0.25 +0.5
390,276 - MPMX19_06203 0.25 -1.0
390,276 - MPMX19_06203 0.25 -0.9
390,276 - MPMX19_06203 0.25 -0.5
390,276 - MPMX19_06203 0.25 +1.5
390,276 - MPMX19_06203 0.25 -1.0
390,276 - MPMX19_06203 0.25 -0.1
390,276 - MPMX19_06203 0.25 +0.6
390,276 - MPMX19_06203 0.25 +0.6
390,276 - MPMX19_06203 0.25 -1.4
390,311 + MPMX19_06203 0.32 -0.6
390,311 + MPMX19_06203 0.32 +0.2
390,311 + MPMX19_06203 0.32 +1.6
390,311 + MPMX19_06203 0.32 +0.1
390,311 + MPMX19_06203 0.32 -0.6
390,311 + MPMX19_06203 0.32 -0.5
390,311 + MPMX19_06203 0.32 +0.4
390,311 + MPMX19_06203 0.32 -0.3
390,312 - MPMX19_06203 0.33 +0.2
390,312 - MPMX19_06203 0.33 +0.7
390,312 - MPMX19_06203 0.33 -0.5
390,312 - MPMX19_06203 0.33 +0.8
390,312 - MPMX19_06203 0.33 -0.3
390,312 - MPMX19_06203 0.33 +0.3
390,312 - MPMX19_06203 0.33 -0.8
390,314 + MPMX19_06203 0.33 -1.1
390,314 + MPMX19_06203 0.33 +0.2
390,314 + MPMX19_06203 0.33 -2.2
390,315 - MPMX19_06203 0.33 -0.2
390,386 + MPMX19_06203 0.48 +0.2
390,386 + MPMX19_06203 0.48 -1.3
390,386 + MPMX19_06203 0.48 -0.8
390,386 + MPMX19_06203 0.48 -0.7
390,386 + MPMX19_06203 0.48 +0.6
390,386 + MPMX19_06203 0.48 -0.8
390,386 + MPMX19_06203 0.48 -1.5
390,386 + MPMX19_06203 0.48 -0.5
390,386 + MPMX19_06203 0.48 -1.9
390,387 - MPMX19_06203 0.48 +0.7
390,387 - MPMX19_06203 0.48 -1.3
390,387 - MPMX19_06203 0.48 +0.0
390,387 - MPMX19_06203 0.48 -1.4
390,387 - MPMX19_06203 0.48 -0.6
390,387 - MPMX19_06203 0.48 -0.8
390,470 + MPMX19_06203 0.65 +0.2
390,470 + MPMX19_06203 0.65 -0.1
390,470 + MPMX19_06203 0.65 -0.5
390,470 + MPMX19_06203 0.65 +0.5
390,470 + MPMX19_06203 0.65 -0.1
390,471 - MPMX19_06203 0.65 -0.2
390,471 - MPMX19_06203 0.65 +0.4
390,471 - MPMX19_06203 0.65 -1.1
390,471 - MPMX19_06203 0.65 -1.9
390,560 + MPMX19_06203 0.84 -0.5
390,561 - MPMX19_06203 0.84 +0.8
390,630 + -1.0
390,630 + -0.3
390,630 + -0.7
390,630 + +0.9
390,630 + -0.4
390,630 + -1.4
390,630 + -0.1
390,630 + +1.2
390,630 + -3.0
390,630 + -0.3
390,630 + -0.4
390,630 + -1.6
390,630 + -0.1
390,630 + +0.2
390,630 + +1.4
390,630 + -1.3
390,630 + +0.0
390,630 + -1.5
390,630 + -1.0
390,630 + -0.1
390,630 + -0.1
390,630 + -0.8
390,630 + +1.2
390,630 + -2.6
390,630 + +0.8
390,631 - +1.5
390,631 - -0.6
390,631 - +0.9
390,631 - +0.9
390,631 - +0.1
390,631 - +0.6
390,631 - +0.4
390,631 - -0.7
390,631 - -1.3
390,631 - -0.8
390,631 - -1.1
390,631 - -1.7
390,631 - +0.4
390,631 - +1.9
390,631 - +0.3
390,631 - +0.4
390,631 - +0.3
390,631 - -1.8
390,631 - -1.2
390,631 - -0.8
390,631 - -2.2
390,639 + +0.2
390,639 + -0.8
390,640 - +0.9
390,640 - -0.2
390,640 - -0.3
390,640 - +0.9
390,640 - +0.6
391,017 + -0.5
391,018 - +0.4
391,221 + +0.1
391,221 + -1.0

Or see this region's nucleotide sequence