Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06197 and MPMX19_06198 are separated by 72 nucleotides MPMX19_06198 and MPMX19_06199 are separated by 57 nucleotides MPMX19_06199 and MPMX19_06200 are separated by 366 nucleotides
MPMX19_06197: MPMX19_06197 - hypothetical protein, at 384,931 to 385,536
_06197
MPMX19_06198: MPMX19_06198 - hypothetical protein, at 385,609 to 385,992
_06198
MPMX19_06199: MPMX19_06199 - GTPase HflX, at 386,050 to 387,396
_06199
MPMX19_06200: MPMX19_06200 - hypothetical protein, at 387,763 to 388,926
_06200
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 385.100 kb on - strand, within MPMX19_06197 at 385.100 kb on - strand, within MPMX19_06197 at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.990 kb on + strand at 385.990 kb on + strand at 385.990 kb on + strand at 385.991 kb on - strand at 386.171 kb on + strand at 386.171 kb on + strand at 386.171 kb on + strand at 386.172 kb on - strand at 386.172 kb on - strand at 386.172 kb on - strand at 386.721 kb on - strand, within MPMX19_06199 at 386.945 kb on + strand, within MPMX19_06199 at 386.945 kb on + strand, within MPMX19_06199 at 386.945 kb on + strand, within MPMX19_06199 at 386.946 kb on - strand, within MPMX19_06199 at 387.234 kb on + strand, within MPMX19_06199 at 387.234 kb on + strand, within MPMX19_06199 at 387.234 kb on + strand, within MPMX19_06199 at 387.234 kb on + strand, within MPMX19_06199 at 387.234 kb on + strand, within MPMX19_06199 at 387.235 kb on - strand, within MPMX19_06199 at 387.235 kb on - strand, within MPMX19_06199 at 387.235 kb on - strand, within MPMX19_06199 at 387.235 kb on - strand, within MPMX19_06199 at 387.235 kb on - strand, within MPMX19_06199 at 387.235 kb on - strand, within MPMX19_06199 at 387.235 kb on - strand, within MPMX19_06199 at 387.390 kb on + strand at 387.390 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.671 kb on + strand at 387.671 kb on + strand at 387.671 kb on + strand at 387.671 kb on + strand at 387.671 kb on + strand at 387.671 kb on + strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.705 kb on + strand at 387.705 kb on + strand at 387.705 kb on + strand at 387.705 kb on + strand at 387.705 kb on + strand at 387.705 kb on + strand at 387.705 kb on + strand at 387.706 kb on - strand at 387.706 kb on - strand at 387.706 kb on - strand at 387.706 kb on - strand at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.199 kb on + strand, within MPMX19_06200 at 388.199 kb on + strand, within MPMX19_06200 at 388.200 kb on - strand, within MPMX19_06200 at 388.226 kb on + strand, within MPMX19_06200 at 388.226 kb on + strand, within MPMX19_06200 at 388.226 kb on + strand, within MPMX19_06200 at 388.226 kb on + strand, within MPMX19_06200 at 388.226 kb on + strand, within MPMX19_06200 at 388.226 kb on + strand, within MPMX19_06200 at 388.226 kb on + strand, within MPMX19_06200 at 388.227 kb on - strand, within MPMX19_06200 at 388.227 kb on - strand, within MPMX19_06200 at 388.227 kb on - strand, within MPMX19_06200 at 388.227 kb on - strand, within MPMX19_06200 at 388.227 kb on - strand, within MPMX19_06200 at 388.227 kb on - strand, within MPMX19_06200 at 388.376 kb on + strand, within MPMX19_06200 at 388.376 kb on + strand, within MPMX19_06200 at 388.376 kb on + strand, within MPMX19_06200 at 388.376 kb on + strand, within MPMX19_06200 at 388.376 kb on + strand, within MPMX19_06200 at 388.376 kb on + strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 385,100 - MPMX19_06197 0.28 +0.5 385,100 - MPMX19_06197 0.28 -1.5 385,477 + +0.1 385,477 + -0.6 385,477 + -0.6 385,477 + -1.5 385,477 + +1.0 385,477 + -1.0 385,477 + -1.7 385,477 + -1.6 385,478 - +1.6 385,478 - +0.6 385,478 - -1.4 385,478 - -0.3 385,478 - -0.0 385,478 - -0.4 385,750 + MPMX19_06198 0.37 +0.7 385,750 + MPMX19_06198 0.37 +0.9 385,750 + MPMX19_06198 0.37 +0.1 385,750 + MPMX19_06198 0.37 -0.4 385,750 + MPMX19_06198 0.37 -1.2 385,750 + MPMX19_06198 0.37 -1.9 385,750 + MPMX19_06198 0.37 -0.4 385,750 + MPMX19_06198 0.37 -1.0 385,750 + MPMX19_06198 0.37 -0.4 385,750 + MPMX19_06198 0.37 +0.2 385,751 - MPMX19_06198 0.37 +1.1 385,751 - MPMX19_06198 0.37 -0.4 385,751 - MPMX19_06198 0.37 +0.0 385,751 - MPMX19_06198 0.37 -0.6 385,751 - MPMX19_06198 0.37 +0.9 385,966 + -1.2 385,966 + -0.2 385,966 + -1.5 385,966 + -0.4 385,966 + -0.1 385,966 + -2.8 385,966 + -1.1 385,966 + +0.8 385,966 + -1.4 385,967 - -1.0 385,967 - +1.2 385,967 - -0.6 385,967 - +0.4 385,967 - +0.2 385,967 - -0.0 385,967 - -0.3 385,967 - -1.0 385,967 - -0.6 385,967 - -0.1 385,990 + +1.2 385,990 + -1.8 385,990 + -0.9 385,991 - -0.5 386,171 + +1.2 386,171 + -0.4 386,171 + -1.0 386,172 - -1.2 386,172 - -0.8 386,172 - -1.3 386,721 - MPMX19_06199 0.50 +0.6 386,945 + MPMX19_06199 0.66 +1.2 386,945 + MPMX19_06199 0.66 -1.1 386,945 + MPMX19_06199 0.66 +1.3 386,946 - MPMX19_06199 0.67 +0.4 387,234 + MPMX19_06199 0.88 -0.7 387,234 + MPMX19_06199 0.88 +0.8 387,234 + MPMX19_06199 0.88 -0.1 387,234 + MPMX19_06199 0.88 +0.4 387,234 + MPMX19_06199 0.88 -1.7 387,235 - MPMX19_06199 0.88 -1.0 387,235 - MPMX19_06199 0.88 +1.1 387,235 - MPMX19_06199 0.88 -1.3 387,235 - MPMX19_06199 0.88 -1.4 387,235 - MPMX19_06199 0.88 +1.0 387,235 - MPMX19_06199 0.88 +0.6 387,235 - MPMX19_06199 0.88 +0.1 387,390 + -1.9 387,390 + +0.6 387,606 + -0.1 387,606 + -0.7 387,606 + -0.6 387,606 + +0.0 387,606 + -0.6 387,606 + +1.0 387,606 + -2.0 387,606 + -0.7 387,606 + -0.2 387,606 + +0.6 387,606 + -1.8 387,606 + +0.7 387,606 + -0.1 387,606 + -0.6 387,606 + +1.5 387,607 - -0.1 387,607 - +1.2 387,607 - -0.7 387,607 - +0.1 387,607 - -0.7 387,607 - +0.6 387,607 - -2.7 387,607 - +0.8 387,607 - +0.1 387,607 - -1.0 387,607 - -2.6 387,607 - -0.8 387,607 - +1.9 387,607 - +0.3 387,607 - +0.8 387,671 + -0.1 387,671 + -0.7 387,671 + -0.5 387,671 + -0.1 387,671 + -0.6 387,671 + -0.3 387,672 - -0.3 387,672 - +0.3 387,672 - +0.9 387,672 - +0.5 387,672 - +0.3 387,672 - -0.2 387,672 - -0.5 387,672 - +0.9 387,672 - -1.0 387,672 - +0.1 387,705 + -2.0 387,705 + +0.1 387,705 + -0.7 387,705 + -1.6 387,705 + -0.5 387,705 + -1.8 387,705 + -1.2 387,706 - +1.5 387,706 - -0.7 387,706 - -1.1 387,706 - +0.0 388,130 + MPMX19_06200 0.32 -1.0 388,130 + MPMX19_06200 0.32 -0.6 388,130 + MPMX19_06200 0.32 -1.1 388,130 + MPMX19_06200 0.32 -0.6 388,130 + MPMX19_06200 0.32 +0.6 388,130 + MPMX19_06200 0.32 -0.0 388,130 + MPMX19_06200 0.32 -1.1 388,130 + MPMX19_06200 0.32 -0.3 388,130 + MPMX19_06200 0.32 -0.4 388,130 + MPMX19_06200 0.32 -0.7 388,131 - MPMX19_06200 0.32 +0.6 388,131 - MPMX19_06200 0.32 -1.3 388,131 - MPMX19_06200 0.32 +1.0 388,131 - MPMX19_06200 0.32 +0.2 388,131 - MPMX19_06200 0.32 +0.2 388,131 - MPMX19_06200 0.32 -0.7 388,131 - MPMX19_06200 0.32 -0.1 388,131 - MPMX19_06200 0.32 -0.1 388,131 - MPMX19_06200 0.32 -0.6 388,131 - MPMX19_06200 0.32 +0.3 388,131 - MPMX19_06200 0.32 -1.3 388,131 - MPMX19_06200 0.32 +0.9 388,131 - MPMX19_06200 0.32 -1.1 388,199 + MPMX19_06200 0.37 +0.0 388,199 + MPMX19_06200 0.37 -0.5 388,200 - MPMX19_06200 0.38 -0.1 388,226 + MPMX19_06200 0.40 -1.7 388,226 + MPMX19_06200 0.40 -0.1 388,226 + MPMX19_06200 0.40 -0.2 388,226 + MPMX19_06200 0.40 -0.2 388,226 + MPMX19_06200 0.40 +0.5 388,226 + MPMX19_06200 0.40 -2.1 388,226 + MPMX19_06200 0.40 -0.8 388,227 - MPMX19_06200 0.40 +1.2 388,227 - MPMX19_06200 0.40 -0.5 388,227 - MPMX19_06200 0.40 +0.2 388,227 - MPMX19_06200 0.40 -0.4 388,227 - MPMX19_06200 0.40 -0.0 388,227 - MPMX19_06200 0.40 -0.6 388,376 + MPMX19_06200 0.53 +1.6 388,376 + MPMX19_06200 0.53 -1.3 388,376 + MPMX19_06200 0.53 -0.1 388,376 + MPMX19_06200 0.53 +0.6 388,376 + MPMX19_06200 0.53 -1.6 388,376 + MPMX19_06200 0.53 -2.2 388,377 - MPMX19_06200 0.53 -0.5 388,377 - MPMX19_06200 0.53 +0.9 388,377 - MPMX19_06200 0.53 -0.2 388,377 - MPMX19_06200 0.53 -0.7 388,377 - MPMX19_06200 0.53 -0.7 388,377 - MPMX19_06200 0.53 -1.1 388,377 - MPMX19_06200 0.53 -1.3 388,377 - MPMX19_06200 0.53 -1.7 388,377 - MPMX19_06200 0.53 -0.3 388,377 - MPMX19_06200 0.53 +0.4
Or see this region's nucleotide sequence