Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06166 and MPMX19_06167 overlap by 4 nucleotides MPMX19_06167 and MPMX19_06168 are separated by 609 nucleotides MPMX19_06168 and MPMX19_06169 are separated by 36 nucleotides
MPMX19_06166: MPMX19_06166 - putative acyl-CoA dehydrogenase fadE25, at 353,404 to 354,621
_06166
MPMX19_06167: MPMX19_06167 - hypothetical protein, at 354,618 to 354,968
_06167
MPMX19_06168: MPMX19_06168 - hypothetical protein, at 355,578 to 358,229
_06168
MPMX19_06169: MPMX19_06169 - hypothetical protein, at 358,266 to 358,820
_06169
Position (kb) 355
356
357
358
359 Strain fitness (log2 ratio) -2
-1
0
1
2 at 354.781 kb on + strand, within MPMX19_06167 at 354.782 kb on - strand, within MPMX19_06167 at 354.782 kb on - strand, within MPMX19_06167 at 354.782 kb on - strand, within MPMX19_06167 at 354.943 kb on + strand at 354.944 kb on - strand at 355.006 kb on + strand at 355.006 kb on + strand at 355.007 kb on - strand at 355.007 kb on - strand at 355.007 kb on - strand at 355.007 kb on - strand at 355.089 kb on - strand at 355.100 kb on + strand at 355.100 kb on + strand at 355.101 kb on - strand at 355.142 kb on - strand at 355.142 kb on - strand at 355.162 kb on + strand at 355.162 kb on + strand at 355.162 kb on + strand at 355.162 kb on + strand at 355.162 kb on + strand at 355.163 kb on - strand at 355.163 kb on - strand at 355.163 kb on - strand at 355.163 kb on - strand at 355.163 kb on - strand at 355.163 kb on - strand at 355.326 kb on - strand at 355.326 kb on - strand at 355.629 kb on - strand at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.103 kb on + strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.104 kb on - strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.244 kb on + strand, within MPMX19_06168 at 356.245 kb on - strand, within MPMX19_06168 at 356.245 kb on - strand, within MPMX19_06168 at 356.340 kb on + strand, within MPMX19_06168 at 356.340 kb on + strand, within MPMX19_06168 at 356.340 kb on + strand, within MPMX19_06168 at 356.341 kb on - strand, within MPMX19_06168 at 356.341 kb on - strand, within MPMX19_06168 at 356.341 kb on - strand, within MPMX19_06168 at 356.341 kb on - strand, within MPMX19_06168 at 356.341 kb on - strand, within MPMX19_06168 at 356.715 kb on + strand, within MPMX19_06168 at 356.715 kb on + strand, within MPMX19_06168 at 356.715 kb on + strand, within MPMX19_06168 at 356.716 kb on - strand, within MPMX19_06168 at 356.716 kb on - strand, within MPMX19_06168 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.588 kb on + strand, within MPMX19_06169 at 358.588 kb on + strand, within MPMX19_06169 at 358.622 kb on - strand, within MPMX19_06169 at 358.622 kb on - strand, within MPMX19_06169 at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.971 kb on + strand at 358.971 kb on + strand at 358.992 kb on + strand at 358.992 kb on + strand at 358.993 kb on - strand at 358.993 kb on - strand at 359.002 kb on + strand at 359.208 kb on + strand at 359.208 kb on + strand at 359.209 kb on - strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.218 kb on - strand at 359.218 kb on - strand at 359.218 kb on - strand at 359.218 kb on - strand at 359.218 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 354,781 + MPMX19_06167 0.46 +0.2 354,782 - MPMX19_06167 0.47 -0.8 354,782 - MPMX19_06167 0.47 +0.0 354,782 - MPMX19_06167 0.47 +0.8 354,943 + -1.7 354,944 - -1.3 355,006 + +0.0 355,006 + +1.8 355,007 - +1.5 355,007 - -1.2 355,007 - -0.3 355,007 - -1.0 355,089 - +0.6 355,100 + +1.2 355,100 + -0.4 355,101 - +0.8 355,142 - +0.0 355,142 - +0.1 355,162 + +0.8 355,162 + -2.2 355,162 + -0.8 355,162 + +0.7 355,162 + -0.3 355,163 - -0.2 355,163 - -0.0 355,163 - +0.5 355,163 - -0.5 355,163 - -1.3 355,163 - -0.4 355,326 - +0.2 355,326 - +1.2 355,629 - -1.7 356,103 + MPMX19_06168 0.20 -0.1 356,103 + MPMX19_06168 0.20 +0.6 356,103 + MPMX19_06168 0.20 -0.1 356,103 + MPMX19_06168 0.20 +0.2 356,103 + MPMX19_06168 0.20 +1.0 356,103 + MPMX19_06168 0.20 -0.3 356,103 + MPMX19_06168 0.20 -0.6 356,103 + MPMX19_06168 0.20 -0.6 356,103 + MPMX19_06168 0.20 +0.0 356,103 + MPMX19_06168 0.20 -0.6 356,103 + MPMX19_06168 0.20 +0.6 356,103 + MPMX19_06168 0.20 +1.4 356,103 + MPMX19_06168 0.20 -0.1 356,103 + MPMX19_06168 0.20 -0.5 356,103 + MPMX19_06168 0.20 -0.3 356,104 - MPMX19_06168 0.20 +0.7 356,104 - MPMX19_06168 0.20 -0.3 356,104 - MPMX19_06168 0.20 -2.0 356,104 - MPMX19_06168 0.20 -1.5 356,104 - MPMX19_06168 0.20 +0.4 356,104 - MPMX19_06168 0.20 +0.0 356,104 - MPMX19_06168 0.20 +0.2 356,104 - MPMX19_06168 0.20 -0.5 356,104 - MPMX19_06168 0.20 -1.4 356,104 - MPMX19_06168 0.20 -0.7 356,104 - MPMX19_06168 0.20 +0.2 356,104 - MPMX19_06168 0.20 -1.1 356,244 + MPMX19_06168 0.25 +0.2 356,244 + MPMX19_06168 0.25 +1.5 356,244 + MPMX19_06168 0.25 +0.2 356,244 + MPMX19_06168 0.25 -0.1 356,244 + MPMX19_06168 0.25 +0.0 356,244 + MPMX19_06168 0.25 -0.1 356,244 + MPMX19_06168 0.25 -0.8 356,244 + MPMX19_06168 0.25 -0.5 356,245 - MPMX19_06168 0.25 -0.7 356,245 - MPMX19_06168 0.25 +0.5 356,340 + MPMX19_06168 0.29 +0.0 356,340 + MPMX19_06168 0.29 -0.7 356,340 + MPMX19_06168 0.29 -0.7 356,341 - MPMX19_06168 0.29 +0.1 356,341 - MPMX19_06168 0.29 -1.3 356,341 - MPMX19_06168 0.29 -0.9 356,341 - MPMX19_06168 0.29 +0.0 356,341 - MPMX19_06168 0.29 -0.4 356,715 + MPMX19_06168 0.43 -0.5 356,715 + MPMX19_06168 0.43 +0.9 356,715 + MPMX19_06168 0.43 -0.5 356,716 - MPMX19_06168 0.43 -1.5 356,716 - MPMX19_06168 0.43 -1.5 358,357 + MPMX19_06169 0.16 +0.3 358,357 + MPMX19_06169 0.16 -1.3 358,357 + MPMX19_06169 0.16 -1.3 358,357 + MPMX19_06169 0.16 +0.2 358,357 + MPMX19_06169 0.16 -0.8 358,357 + MPMX19_06169 0.16 +0.2 358,357 + MPMX19_06169 0.16 +0.2 358,357 + MPMX19_06169 0.16 +0.6 358,357 + MPMX19_06169 0.16 +0.0 358,358 - MPMX19_06169 0.17 -0.7 358,358 - MPMX19_06169 0.17 -1.0 358,358 - MPMX19_06169 0.17 -0.9 358,358 - MPMX19_06169 0.17 +1.1 358,358 - MPMX19_06169 0.17 -1.7 358,358 - MPMX19_06169 0.17 +0.8 358,358 - MPMX19_06169 0.17 +0.1 358,358 - MPMX19_06169 0.17 -1.7 358,358 - MPMX19_06169 0.17 -0.5 358,358 - MPMX19_06169 0.17 -0.5 358,358 - MPMX19_06169 0.17 +1.2 358,588 + MPMX19_06169 0.58 -0.0 358,588 + MPMX19_06169 0.58 +1.4 358,622 - MPMX19_06169 0.64 +0.7 358,622 - MPMX19_06169 0.64 +0.6 358,840 + +0.0 358,840 + +0.2 358,840 + +0.9 358,840 + -0.6 358,840 + -2.1 358,840 + -0.6 358,840 + +1.4 358,840 + -0.7 358,840 + +1.5 358,840 + -0.4 358,841 - +2.0 358,841 - -0.4 358,841 - +0.7 358,841 - -1.0 358,841 - -0.8 358,841 - -1.5 358,841 - -0.3 358,841 - -1.4 358,841 - -0.0 358,841 - -1.0 358,866 + +0.0 358,866 + -1.2 358,866 + -1.3 358,866 + +0.7 358,866 + -0.3 358,866 + +0.4 358,866 + -2.1 358,866 + -0.7 358,866 + +0.1 358,866 + +0.5 358,867 - -0.2 358,867 - -1.5 358,867 - +1.2 358,867 - -0.4 358,867 - +0.2 358,867 - -1.4 358,867 - -0.7 358,867 - -0.7 358,867 - +1.8 358,867 - +0.2 358,867 - +0.9 358,867 - +0.9 358,867 - +0.6 358,966 + +1.0 358,966 + -2.5 358,966 + -2.4 358,966 + -0.4 358,966 + -1.0 358,966 + -0.3 358,967 - -1.0 358,967 - -1.1 358,967 - -0.1 358,967 - -0.1 358,967 - -1.0 358,971 + -0.5 358,971 + -2.2 358,992 + +0.1 358,992 + -0.7 358,993 - -0.6 358,993 - -0.6 359,002 + -1.0 359,208 + -0.4 359,208 + -0.2 359,209 - +0.3 359,217 + -0.4 359,217 + -2.2 359,217 + +0.2 359,217 + +0.0 359,217 + -1.0 359,218 - -1.8 359,218 - -2.0 359,218 - +0.7 359,218 - -0.5 359,218 - +1.0
Or see this region's nucleotide sequence