Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06155 and MPMX19_06156 are separated by 194 nucleotides MPMX19_06156 and MPMX19_06157 are separated by 174 nucleotides MPMX19_06157 and MPMX19_06158 are separated by 43 nucleotides MPMX19_06158 and MPMX19_06159 are separated by 331 nucleotides
MPMX19_06155: MPMX19_06155 - Quinoprotein glucose dehydrogenase, at 339,757 to 342,204
_06155
MPMX19_06156: MPMX19_06156 - hypothetical protein, at 342,399 to 342,920
_06156
MPMX19_06157: MPMX19_06157 - hypothetical protein, at 343,095 to 343,304
_06157
MPMX19_06158: MPMX19_06158 - hypothetical protein, at 343,348 to 343,647
_06158
MPMX19_06159: MPMX19_06159 - N-carbamoyl-L-amino acid hydrolase, at 343,979 to 345,241
_06159
Position (kb) 343
344 Strain fitness (log2 ratio) -2
-1
0
1
2 at 342.453 kb on + strand, within MPMX19_06156 at 342.453 kb on + strand, within MPMX19_06156 at 342.454 kb on - strand, within MPMX19_06156 at 342.477 kb on + strand, within MPMX19_06156 at 342.477 kb on + strand, within MPMX19_06156 at 342.477 kb on + strand, within MPMX19_06156 at 342.478 kb on - strand, within MPMX19_06156 at 342.478 kb on - strand, within MPMX19_06156 at 343.008 kb on + strand at 343.009 kb on - strand at 343.009 kb on - strand at 343.009 kb on - strand at 343.019 kb on + strand at 343.055 kb on + strand at 343.055 kb on + strand at 343.055 kb on + strand at 343.056 kb on - strand at 343.056 kb on - strand at 343.245 kb on + strand, within MPMX19_06157 at 343.246 kb on - strand, within MPMX19_06157 at 343.246 kb on - strand, within MPMX19_06157 at 343.246 kb on - strand, within MPMX19_06157 at 343.246 kb on - strand, within MPMX19_06157 at 343.246 kb on - strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.278 kb on + strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.279 kb on - strand, within MPMX19_06157 at 343.349 kb on + strand at 343.349 kb on + strand at 343.349 kb on + strand at 343.349 kb on + strand at 343.349 kb on + strand at 343.349 kb on + strand at 343.349 kb on + strand at 343.349 kb on + strand at 343.350 kb on - strand at 343.350 kb on - strand at 343.350 kb on - strand at 343.350 kb on - strand at 343.350 kb on - strand at 343.350 kb on - strand at 343.350 kb on - strand at 343.350 kb on - strand at 343.350 kb on - strand at 343.350 kb on - strand at 343.350 kb on - strand at 343.691 kb on + strand at 343.692 kb on - strand at 343.692 kb on - strand at 343.692 kb on - strand at 343.704 kb on - strand at 343.739 kb on + strand at 343.739 kb on + strand at 343.740 kb on - strand at 343.740 kb on - strand at 343.771 kb on + strand at 343.771 kb on + strand at 343.779 kb on - strand at 343.916 kb on + strand at 343.916 kb on + strand at 343.916 kb on + strand at 343.916 kb on + strand at 343.916 kb on + strand at 343.916 kb on + strand at 343.916 kb on + strand at 343.917 kb on - strand at 343.917 kb on - strand at 343.917 kb on - strand at 343.917 kb on - strand at 343.917 kb on - strand at 343.917 kb on - strand at 343.917 kb on - strand at 343.918 kb on + strand at 343.918 kb on + strand at 343.919 kb on - strand at 343.919 kb on - strand at 343.919 kb on - strand at 343.919 kb on - strand at 343.919 kb on - strand at 344.087 kb on + strand at 344.087 kb on + strand at 344.087 kb on + strand at 344.087 kb on + strand at 344.087 kb on + strand at 344.087 kb on + strand at 344.088 kb on - strand at 344.088 kb on - strand at 344.088 kb on - strand at 344.088 kb on - strand at 344.088 kb on - strand at 344.088 kb on - strand at 344.088 kb on - strand at 344.192 kb on + strand, within MPMX19_06159 at 344.193 kb on - strand, within MPMX19_06159 at 344.267 kb on + strand, within MPMX19_06159 at 344.267 kb on + strand, within MPMX19_06159 at 344.268 kb on - strand, within MPMX19_06159 at 344.268 kb on - strand, within MPMX19_06159 at 344.268 kb on - strand, within MPMX19_06159 at 344.268 kb on - strand, within MPMX19_06159
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 342,453 + MPMX19_06156 0.10 -0.5 342,453 + MPMX19_06156 0.10 +0.2 342,454 - MPMX19_06156 0.11 +0.8 342,477 + MPMX19_06156 0.15 -2.4 342,477 + MPMX19_06156 0.15 -0.7 342,477 + MPMX19_06156 0.15 -1.8 342,478 - MPMX19_06156 0.15 -0.4 342,478 - MPMX19_06156 0.15 +1.8 343,008 + -1.0 343,009 - -0.4 343,009 - -1.3 343,009 - +0.5 343,019 + -1.7 343,055 + +0.9 343,055 + +0.1 343,055 + -0.9 343,056 - -0.5 343,056 - +0.9 343,245 + MPMX19_06157 0.71 +1.5 343,246 - MPMX19_06157 0.72 -0.6 343,246 - MPMX19_06157 0.72 +0.1 343,246 - MPMX19_06157 0.72 +0.9 343,246 - MPMX19_06157 0.72 -1.0 343,246 - MPMX19_06157 0.72 -0.6 343,278 + MPMX19_06157 0.87 +1.0 343,278 + MPMX19_06157 0.87 +1.9 343,278 + MPMX19_06157 0.87 -0.7 343,278 + MPMX19_06157 0.87 +0.2 343,278 + MPMX19_06157 0.87 +1.6 343,278 + MPMX19_06157 0.87 -0.4 343,278 + MPMX19_06157 0.87 +0.5 343,278 + MPMX19_06157 0.87 +0.6 343,278 + MPMX19_06157 0.87 +0.2 343,278 + MPMX19_06157 0.87 -1.8 343,278 + MPMX19_06157 0.87 -0.2 343,278 + MPMX19_06157 0.87 +0.6 343,278 + MPMX19_06157 0.87 -0.9 343,278 + MPMX19_06157 0.87 -1.1 343,278 + MPMX19_06157 0.87 +0.4 343,278 + MPMX19_06157 0.87 -1.1 343,278 + MPMX19_06157 0.87 -1.3 343,278 + MPMX19_06157 0.87 +0.6 343,278 + MPMX19_06157 0.87 +0.1 343,278 + MPMX19_06157 0.87 +0.3 343,278 + MPMX19_06157 0.87 +0.9 343,278 + MPMX19_06157 0.87 +0.2 343,278 + MPMX19_06157 0.87 +0.2 343,278 + MPMX19_06157 0.87 -0.5 343,278 + MPMX19_06157 0.87 -1.5 343,278 + MPMX19_06157 0.87 +0.3 343,278 + MPMX19_06157 0.87 -1.0 343,278 + MPMX19_06157 0.87 -1.1 343,278 + MPMX19_06157 0.87 -0.4 343,278 + MPMX19_06157 0.87 -0.6 343,278 + MPMX19_06157 0.87 +0.7 343,278 + MPMX19_06157 0.87 -1.1 343,278 + MPMX19_06157 0.87 -1.2 343,278 + MPMX19_06157 0.87 -0.7 343,278 + MPMX19_06157 0.87 -0.1 343,278 + MPMX19_06157 0.87 +0.6 343,278 + MPMX19_06157 0.87 +0.9 343,278 + MPMX19_06157 0.87 -1.0 343,278 + MPMX19_06157 0.87 +0.1 343,278 + MPMX19_06157 0.87 -2.2 343,278 + MPMX19_06157 0.87 -0.2 343,278 + MPMX19_06157 0.87 +0.6 343,278 + MPMX19_06157 0.87 -0.0 343,278 + MPMX19_06157 0.87 -1.5 343,278 + MPMX19_06157 0.87 -0.5 343,278 + MPMX19_06157 0.87 +0.0 343,278 + MPMX19_06157 0.87 +0.3 343,279 - MPMX19_06157 0.88 -1.9 343,279 - MPMX19_06157 0.88 -1.5 343,279 - MPMX19_06157 0.88 -0.5 343,279 - MPMX19_06157 0.88 -0.6 343,279 - MPMX19_06157 0.88 -0.4 343,279 - MPMX19_06157 0.88 +0.4 343,279 - MPMX19_06157 0.88 +0.5 343,279 - MPMX19_06157 0.88 +0.1 343,279 - MPMX19_06157 0.88 +0.0 343,279 - MPMX19_06157 0.88 +0.5 343,279 - MPMX19_06157 0.88 -0.6 343,279 - MPMX19_06157 0.88 -0.1 343,279 - MPMX19_06157 0.88 +0.6 343,279 - MPMX19_06157 0.88 -1.2 343,279 - MPMX19_06157 0.88 +0.2 343,279 - MPMX19_06157 0.88 +0.6 343,279 - MPMX19_06157 0.88 -1.4 343,279 - MPMX19_06157 0.88 -0.8 343,279 - MPMX19_06157 0.88 +0.8 343,279 - MPMX19_06157 0.88 -1.4 343,279 - MPMX19_06157 0.88 -1.4 343,279 - MPMX19_06157 0.88 +0.9 343,279 - MPMX19_06157 0.88 +0.1 343,279 - MPMX19_06157 0.88 -1.4 343,279 - MPMX19_06157 0.88 -0.4 343,279 - MPMX19_06157 0.88 -1.8 343,279 - MPMX19_06157 0.88 +0.2 343,279 - MPMX19_06157 0.88 -0.8 343,279 - MPMX19_06157 0.88 -0.2 343,279 - MPMX19_06157 0.88 -0.1 343,279 - MPMX19_06157 0.88 -2.3 343,279 - MPMX19_06157 0.88 -2.4 343,279 - MPMX19_06157 0.88 -0.1 343,279 - MPMX19_06157 0.88 -2.5 343,279 - MPMX19_06157 0.88 -2.0 343,279 - MPMX19_06157 0.88 -0.6 343,279 - MPMX19_06157 0.88 -0.2 343,279 - MPMX19_06157 0.88 -1.1 343,279 - MPMX19_06157 0.88 -1.6 343,279 - MPMX19_06157 0.88 -0.6 343,279 - MPMX19_06157 0.88 -0.1 343,279 - MPMX19_06157 0.88 -1.0 343,279 - MPMX19_06157 0.88 -1.0 343,279 - MPMX19_06157 0.88 -0.8 343,279 - MPMX19_06157 0.88 -1.0 343,279 - MPMX19_06157 0.88 +0.5 343,279 - MPMX19_06157 0.88 -0.0 343,279 - MPMX19_06157 0.88 -1.2 343,349 + +0.6 343,349 + -0.4 343,349 + -0.6 343,349 + -1.4 343,349 + +0.1 343,349 + -0.4 343,349 + +1.6 343,349 + +0.3 343,350 - -0.5 343,350 - +0.8 343,350 - -0.3 343,350 - -0.8 343,350 - -0.4 343,350 - -1.0 343,350 - -0.1 343,350 - -0.6 343,350 - -0.7 343,350 - -2.5 343,350 - -0.3 343,691 + +0.5 343,692 - +1.1 343,692 - -0.2 343,692 - +1.5 343,704 - -1.2 343,739 + -1.6 343,739 + -0.4 343,740 - -0.8 343,740 - -0.7 343,771 + -1.6 343,771 + -0.3 343,779 - -1.0 343,916 + -0.6 343,916 + -0.6 343,916 + +0.0 343,916 + -1.0 343,916 + +0.2 343,916 + +0.4 343,916 + +0.0 343,917 - -0.3 343,917 - -1.0 343,917 - +0.3 343,917 - -1.0 343,917 - -0.1 343,917 - +1.1 343,917 - -2.0 343,918 + +0.3 343,918 + -0.4 343,919 - -1.0 343,919 - -1.6 343,919 - -1.8 343,919 - -0.3 343,919 - -0.8 344,087 + -1.1 344,087 + -1.1 344,087 + -0.8 344,087 + -1.1 344,087 + -0.0 344,087 + -0.5 344,088 - +0.2 344,088 - -0.2 344,088 - +1.2 344,088 - -1.3 344,088 - -1.3 344,088 - +0.3 344,088 - -1.1 344,192 + MPMX19_06159 0.17 -0.5 344,193 - MPMX19_06159 0.17 -0.3 344,267 + MPMX19_06159 0.23 -0.6 344,267 + MPMX19_06159 0.23 -0.5 344,268 - MPMX19_06159 0.23 +0.2 344,268 - MPMX19_06159 0.23 +0.1 344,268 - MPMX19_06159 0.23 -1.0 344,268 - MPMX19_06159 0.23 +0.4
Or see this region's nucleotide sequence