Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06142

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06141 and MPMX19_06142 are separated by 10 nucleotidesMPMX19_06142 and MPMX19_06143 are separated by 101 nucleotidesMPMX19_06143 and MPMX19_06144 are separated by 86 nucleotides MPMX19_06141: MPMX19_06141 - Intermembrane phospholipid transport system permease protein MlaE, at 329,070 to 329,846 _06141 MPMX19_06142: MPMX19_06142 - putative ribonucleotide transport ATP-binding protein mkl, at 329,857 to 330,630 _06142 MPMX19_06143: MPMX19_06143 - Endonuclease III, at 330,732 to 331,412 _06143 MPMX19_06144: MPMX19_06144 - hypothetical protein, at 331,499 to 331,729 _06144 Position (kb) 329 330 331Strain fitness (log2 ratio) -2 -1 0 1 2 3at 328.905 kb on - strandat 328.905 kb on - strandat 328.905 kb on - strandat 328.905 kb on - strandat 329.003 kb on + strandat 329.003 kb on + strandat 329.003 kb on + strandat 329.020 kb on + strandat 329.020 kb on + strandat 329.020 kb on + strandat 329.020 kb on + strandat 329.021 kb on - strandat 329.021 kb on - strandat 329.068 kb on + strandat 329.068 kb on + strandat 329.069 kb on - strandat 329.181 kb on + strand, within MPMX19_06141at 329.224 kb on - strand, within MPMX19_06141at 329.224 kb on - strand, within MPMX19_06141at 329.286 kb on + strand, within MPMX19_06141at 329.287 kb on - strand, within MPMX19_06141at 329.481 kb on + strand, within MPMX19_06141at 329.487 kb on + strand, within MPMX19_06141at 329.488 kb on - strand, within MPMX19_06141at 329.488 kb on - strand, within MPMX19_06141at 329.616 kb on + strand, within MPMX19_06141at 329.616 kb on + strand, within MPMX19_06141at 329.617 kb on - strand, within MPMX19_06141at 329.617 kb on - strand, within MPMX19_06141at 329.617 kb on - strand, within MPMX19_06141at 329.617 kb on - strand, within MPMX19_06141at 329.715 kb on + strand, within MPMX19_06141at 329.811 kb on + strandat 329.811 kb on + strandat 329.812 kb on - strandat 329.812 kb on - strandat 330.193 kb on - strand, within MPMX19_06142at 330.505 kb on + strand, within MPMX19_06142at 330.505 kb on + strand, within MPMX19_06142at 330.505 kb on + strand, within MPMX19_06142at 330.506 kb on - strand, within MPMX19_06142at 330.506 kb on - strand, within MPMX19_06142at 330.565 kb on + strandat 330.565 kb on + strandat 330.566 kb on - strandat 330.628 kb on + strandat 330.849 kb on + strand, within MPMX19_06143at 331.221 kb on + strand, within MPMX19_06143at 331.221 kb on + strand, within MPMX19_06143at 331.221 kb on + strand, within MPMX19_06143at 331.221 kb on + strand, within MPMX19_06143at 331.221 kb on + strand, within MPMX19_06143at 331.221 kb on + strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.222 kb on - strand, within MPMX19_06143at 331.284 kb on + strand, within MPMX19_06143at 331.284 kb on + strand, within MPMX19_06143at 331.284 kb on + strand, within MPMX19_06143at 331.459 kb on + strandat 331.459 kb on + strandat 331.459 kb on + strandat 331.460 kb on - strandat 331.460 kb on - strandat 331.460 kb on - strandat 331.508 kb on + strandat 331.508 kb on + strandat 331.509 kb on - strandat 331.509 kb on - strandat 331.509 kb on - strandat 331.509 kb on - strandat 331.509 kb on - strandat 331.568 kb on + strand, within MPMX19_06144at 331.569 kb on - strand, within MPMX19_06144at 331.569 kb on - strand, within MPMX19_06144at 331.569 kb on - strand, within MPMX19_06144

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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328,905 - -0.7
328,905 - -2.4
328,905 - +0.4
328,905 - -0.5
329,003 + +0.7
329,003 + +0.4
329,003 + -1.2
329,020 + -1.1
329,020 + -1.5
329,020 + -1.7
329,020 + +0.6
329,021 - -0.3
329,021 - -0.6
329,068 + +0.4
329,068 + -1.5
329,069 - -1.4
329,181 + MPMX19_06141 0.14 -0.1
329,224 - MPMX19_06141 0.20 -1.9
329,224 - MPMX19_06141 0.20 +0.4
329,286 + MPMX19_06141 0.28 -0.1
329,287 - MPMX19_06141 0.28 +0.1
329,481 + MPMX19_06141 0.53 -1.3
329,487 + MPMX19_06141 0.54 -1.3
329,488 - MPMX19_06141 0.54 +0.5
329,488 - MPMX19_06141 0.54 +0.7
329,616 + MPMX19_06141 0.70 -1.9
329,616 + MPMX19_06141 0.70 -1.0
329,617 - MPMX19_06141 0.70 -1.8
329,617 - MPMX19_06141 0.70 +2.4
329,617 - MPMX19_06141 0.70 -1.7
329,617 - MPMX19_06141 0.70 -0.6
329,715 + MPMX19_06141 0.83 +0.6
329,811 + -0.6
329,811 + -1.5
329,812 - +0.6
329,812 - +2.9
330,193 - MPMX19_06142 0.43 +0.0
330,505 + MPMX19_06142 0.84 +1.4
330,505 + MPMX19_06142 0.84 +0.4
330,505 + MPMX19_06142 0.84 +0.1
330,506 - MPMX19_06142 0.84 -0.1
330,506 - MPMX19_06142 0.84 -0.6
330,565 + -0.4
330,565 + -0.4
330,566 - +0.9
330,628 + -1.3
330,849 + MPMX19_06143 0.17 -1.3
331,221 + MPMX19_06143 0.72 -2.5
331,221 + MPMX19_06143 0.72 -0.4
331,221 + MPMX19_06143 0.72 -0.2
331,221 + MPMX19_06143 0.72 -0.6
331,221 + MPMX19_06143 0.72 -0.4
331,221 + MPMX19_06143 0.72 -0.7
331,222 - MPMX19_06143 0.72 -1.1
331,222 - MPMX19_06143 0.72 -0.3
331,222 - MPMX19_06143 0.72 -0.8
331,222 - MPMX19_06143 0.72 -0.9
331,222 - MPMX19_06143 0.72 -1.1
331,222 - MPMX19_06143 0.72 +0.1
331,222 - MPMX19_06143 0.72 +0.4
331,222 - MPMX19_06143 0.72 -1.7
331,222 - MPMX19_06143 0.72 -0.7
331,222 - MPMX19_06143 0.72 +0.2
331,222 - MPMX19_06143 0.72 +0.2
331,222 - MPMX19_06143 0.72 -0.2
331,222 - MPMX19_06143 0.72 -1.0
331,222 - MPMX19_06143 0.72 +0.2
331,222 - MPMX19_06143 0.72 -0.1
331,222 - MPMX19_06143 0.72 -1.0
331,222 - MPMX19_06143 0.72 -1.5
331,284 + MPMX19_06143 0.81 -0.4
331,284 + MPMX19_06143 0.81 -1.1
331,284 + MPMX19_06143 0.81 -0.1
331,459 + -2.7
331,459 + -1.1
331,459 + +0.6
331,460 - -0.0
331,460 - +1.0
331,460 - -1.0
331,508 + +0.3
331,508 + -1.4
331,509 - -0.3
331,509 - -1.1
331,509 - +1.2
331,509 - -0.3
331,509 - +1.0
331,568 + MPMX19_06144 0.30 +0.0
331,569 - MPMX19_06144 0.30 -0.6
331,569 - MPMX19_06144 0.30 +0.3
331,569 - MPMX19_06144 0.30 +0.0

Or see this region's nucleotide sequence