Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06139 and MPMX19_06140 are separated by 5 nucleotides MPMX19_06140 and MPMX19_06141 are separated by 331 nucleotides
MPMX19_06139: MPMX19_06139 - Replicative DNA helicase, at 326,106 to 327,611
_06139
MPMX19_06140: MPMX19_06140 - Alanine racemase, biosynthetic, at 327,617 to 328,738
_06140
MPMX19_06141: MPMX19_06141 - Intermembrane phospholipid transport system permease protein MlaE, at 329,070 to 329,846
_06141
Position (kb) 327
328
329 Strain fitness (log2 ratio) -2
-1
0
1
2 at 328.721 kb on + strand at 328.722 kb on - strand at 328.722 kb on - strand at 328.722 kb on - strand at 328.736 kb on + strand at 328.736 kb on + strand at 328.737 kb on - strand at 328.796 kb on - strand at 328.905 kb on - strand at 328.905 kb on - strand at 328.905 kb on - strand at 328.905 kb on - strand at 329.003 kb on + strand at 329.003 kb on + strand at 329.003 kb on + strand at 329.020 kb on + strand at 329.020 kb on + strand at 329.020 kb on + strand at 329.020 kb on + strand at 329.021 kb on - strand at 329.021 kb on - strand at 329.068 kb on + strand at 329.068 kb on + strand at 329.069 kb on - strand at 329.181 kb on + strand, within MPMX19_06141 at 329.224 kb on - strand, within MPMX19_06141 at 329.224 kb on - strand, within MPMX19_06141 at 329.286 kb on + strand, within MPMX19_06141 at 329.287 kb on - strand, within MPMX19_06141 at 329.481 kb on + strand, within MPMX19_06141 at 329.487 kb on + strand, within MPMX19_06141 at 329.488 kb on - strand, within MPMX19_06141 at 329.488 kb on - strand, within MPMX19_06141 at 329.616 kb on + strand, within MPMX19_06141 at 329.616 kb on + strand, within MPMX19_06141 at 329.617 kb on - strand, within MPMX19_06141 at 329.617 kb on - strand, within MPMX19_06141 at 329.617 kb on - strand, within MPMX19_06141 at 329.617 kb on - strand, within MPMX19_06141 at 329.715 kb on + strand, within MPMX19_06141
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 328,721 + -2.2 328,722 - -2.3 328,722 - -0.5 328,722 - +0.0 328,736 + +1.2 328,736 + +0.5 328,737 - -0.1 328,796 - -0.4 328,905 - -0.7 328,905 - -2.4 328,905 - +0.4 328,905 - -0.5 329,003 + +0.7 329,003 + +0.4 329,003 + -1.2 329,020 + -1.1 329,020 + -1.5 329,020 + -1.7 329,020 + +0.6 329,021 - -0.3 329,021 - -0.6 329,068 + +0.4 329,068 + -1.5 329,069 - -1.4 329,181 + MPMX19_06141 0.14 -0.1 329,224 - MPMX19_06141 0.20 -1.9 329,224 - MPMX19_06141 0.20 +0.4 329,286 + MPMX19_06141 0.28 -0.1 329,287 - MPMX19_06141 0.28 +0.1 329,481 + MPMX19_06141 0.53 -1.3 329,487 + MPMX19_06141 0.54 -1.3 329,488 - MPMX19_06141 0.54 +0.5 329,488 - MPMX19_06141 0.54 +0.7 329,616 + MPMX19_06141 0.70 -1.9 329,616 + MPMX19_06141 0.70 -1.0 329,617 - MPMX19_06141 0.70 -1.8 329,617 - MPMX19_06141 0.70 +2.4 329,617 - MPMX19_06141 0.70 -1.7 329,617 - MPMX19_06141 0.70 -0.6 329,715 + MPMX19_06141 0.83 +0.6
Or see this region's nucleotide sequence