Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06122 and MPMX19_06123 are separated by 67 nucleotides MPMX19_06123 and MPMX19_06124 are separated by 324 nucleotides
MPMX19_06122: MPMX19_06122 - Acetylornithine deacetylase, at 307,389 to 308,717
_06122
MPMX19_06123: MPMX19_06123 - hypothetical protein, at 308,785 to 309,483
_06123
MPMX19_06124: MPMX19_06124 - Chloramphenicol acetyltransferase, at 309,808 to 310,443
_06124
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1
2 at 307.938 kb on + strand, within MPMX19_06122 at 307.938 kb on + strand, within MPMX19_06122 at 308.284 kb on + strand, within MPMX19_06122 at 308.284 kb on + strand, within MPMX19_06122 at 308.284 kb on + strand, within MPMX19_06122 at 308.284 kb on + strand, within MPMX19_06122 at 308.284 kb on + strand, within MPMX19_06122 at 308.284 kb on + strand, within MPMX19_06122 at 308.284 kb on + strand, within MPMX19_06122 at 308.285 kb on - strand, within MPMX19_06122 at 308.285 kb on - strand, within MPMX19_06122 at 308.285 kb on - strand, within MPMX19_06122 at 308.285 kb on - strand, within MPMX19_06122 at 308.285 kb on - strand, within MPMX19_06122 at 308.285 kb on - strand, within MPMX19_06122 at 308.302 kb on - strand, within MPMX19_06122 at 308.302 kb on - strand, within MPMX19_06122 at 308.388 kb on + strand, within MPMX19_06122 at 308.389 kb on - strand, within MPMX19_06122 at 308.389 kb on - strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.520 kb on + strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.521 kb on - strand, within MPMX19_06122 at 308.571 kb on + strand, within MPMX19_06122 at 308.572 kb on - strand, within MPMX19_06122 at 308.786 kb on + strand at 308.786 kb on + strand at 308.786 kb on + strand at 308.787 kb on - strand at 308.787 kb on - strand at 308.787 kb on - strand at 308.787 kb on - strand at 308.849 kb on + strand at 308.849 kb on + strand at 309.272 kb on + strand, within MPMX19_06123 at 309.275 kb on + strand, within MPMX19_06123 at 309.275 kb on + strand, within MPMX19_06123 at 309.634 kb on + strand at 309.634 kb on + strand at 309.634 kb on + strand at 309.634 kb on + strand at 309.635 kb on - strand at 309.635 kb on - strand at 309.635 kb on - strand at 309.635 kb on - strand at 309.635 kb on - strand at 309.635 kb on - strand at 309.638 kb on + strand at 309.638 kb on + strand at 309.638 kb on + strand at 309.638 kb on + strand at 309.639 kb on - strand at 309.639 kb on - strand at 309.639 kb on - strand at 309.639 kb on - strand at 309.639 kb on - strand at 309.665 kb on + strand at 309.665 kb on + strand at 309.665 kb on + strand at 309.665 kb on + strand at 309.665 kb on + strand at 309.665 kb on + strand at 309.665 kb on + strand at 309.666 kb on - strand at 309.666 kb on - strand at 309.666 kb on - strand at 309.666 kb on - strand at 309.666 kb on - strand at 309.666 kb on - strand at 309.666 kb on - strand at 309.666 kb on - strand at 309.775 kb on + strand at 309.775 kb on + strand at 309.775 kb on + strand at 309.776 kb on - strand at 309.889 kb on + strand, within MPMX19_06124 at 309.889 kb on + strand, within MPMX19_06124 at 309.889 kb on + strand, within MPMX19_06124 at 309.889 kb on + strand, within MPMX19_06124 at 309.890 kb on - strand, within MPMX19_06124 at 309.890 kb on - strand, within MPMX19_06124 at 309.890 kb on - strand, within MPMX19_06124 at 309.890 kb on - strand, within MPMX19_06124 at 309.895 kb on + strand, within MPMX19_06124 at 309.895 kb on + strand, within MPMX19_06124 at 309.895 kb on + strand, within MPMX19_06124 at 309.895 kb on + strand, within MPMX19_06124 at 309.895 kb on + strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.896 kb on - strand, within MPMX19_06124 at 309.898 kb on + strand, within MPMX19_06124 at 309.898 kb on + strand, within MPMX19_06124 at 309.898 kb on + strand, within MPMX19_06124 at 309.898 kb on + strand, within MPMX19_06124 at 309.899 kb on - strand, within MPMX19_06124 at 309.899 kb on - strand, within MPMX19_06124 at 309.899 kb on - strand, within MPMX19_06124 at 309.899 kb on - strand, within MPMX19_06124 at 309.910 kb on + strand, within MPMX19_06124 at 309.910 kb on + strand, within MPMX19_06124 at 309.910 kb on + strand, within MPMX19_06124 at 309.910 kb on + strand, within MPMX19_06124 at 309.910 kb on + strand, within MPMX19_06124 at 309.910 kb on + strand, within MPMX19_06124 at 309.910 kb on + strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 309.911 kb on - strand, within MPMX19_06124 at 310.117 kb on + strand, within MPMX19_06124 at 310.252 kb on + strand, within MPMX19_06124 at 310.252 kb on + strand, within MPMX19_06124 at 310.252 kb on + strand, within MPMX19_06124 at 310.252 kb on + strand, within MPMX19_06124 at 310.252 kb on + strand, within MPMX19_06124 at 310.252 kb on + strand, within MPMX19_06124 at 310.253 kb on - strand, within MPMX19_06124 at 310.253 kb on - strand, within MPMX19_06124 at 310.253 kb on - strand, within MPMX19_06124 at 310.253 kb on - strand, within MPMX19_06124
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 307,938 + MPMX19_06122 0.41 -0.5 307,938 + MPMX19_06122 0.41 +1.0 308,284 + MPMX19_06122 0.67 -0.6 308,284 + MPMX19_06122 0.67 -0.3 308,284 + MPMX19_06122 0.67 +0.1 308,284 + MPMX19_06122 0.67 +0.0 308,284 + MPMX19_06122 0.67 -1.8 308,284 + MPMX19_06122 0.67 -1.7 308,284 + MPMX19_06122 0.67 -0.1 308,285 - MPMX19_06122 0.67 +1.2 308,285 - MPMX19_06122 0.67 +0.7 308,285 - MPMX19_06122 0.67 -0.9 308,285 - MPMX19_06122 0.67 -0.1 308,285 - MPMX19_06122 0.67 -0.6 308,285 - MPMX19_06122 0.67 +0.6 308,302 - MPMX19_06122 0.69 -0.3 308,302 - MPMX19_06122 0.69 +0.1 308,388 + MPMX19_06122 0.75 -0.4 308,389 - MPMX19_06122 0.75 -0.1 308,389 - MPMX19_06122 0.75 -0.6 308,520 + MPMX19_06122 0.85 +0.2 308,520 + MPMX19_06122 0.85 -1.7 308,520 + MPMX19_06122 0.85 +0.3 308,520 + MPMX19_06122 0.85 -1.5 308,520 + MPMX19_06122 0.85 -0.6 308,520 + MPMX19_06122 0.85 +0.0 308,520 + MPMX19_06122 0.85 -1.3 308,520 + MPMX19_06122 0.85 +0.0 308,520 + MPMX19_06122 0.85 -0.5 308,520 + MPMX19_06122 0.85 -0.2 308,520 + MPMX19_06122 0.85 +0.1 308,521 - MPMX19_06122 0.85 -0.7 308,521 - MPMX19_06122 0.85 -0.6 308,521 - MPMX19_06122 0.85 -0.8 308,521 - MPMX19_06122 0.85 +1.5 308,521 - MPMX19_06122 0.85 -0.6 308,521 - MPMX19_06122 0.85 -0.1 308,521 - MPMX19_06122 0.85 -0.8 308,521 - MPMX19_06122 0.85 +0.4 308,521 - MPMX19_06122 0.85 -0.3 308,521 - MPMX19_06122 0.85 -1.9 308,521 - MPMX19_06122 0.85 -0.5 308,521 - MPMX19_06122 0.85 +0.2 308,521 - MPMX19_06122 0.85 -0.7 308,521 - MPMX19_06122 0.85 +1.0 308,571 + MPMX19_06122 0.89 -1.1 308,572 - MPMX19_06122 0.89 +0.4 308,786 + +0.8 308,786 + -2.0 308,786 + +0.3 308,787 - -0.4 308,787 - -1.5 308,787 - -0.3 308,787 - -0.1 308,849 + -0.4 308,849 + -0.2 309,272 + MPMX19_06123 0.70 -1.9 309,275 + MPMX19_06123 0.70 +1.0 309,275 + MPMX19_06123 0.70 -2.0 309,634 + -0.8 309,634 + -0.1 309,634 + -0.2 309,634 + +0.4 309,635 - -0.1 309,635 - -0.8 309,635 - -1.4 309,635 - -1.6 309,635 - -0.6 309,635 - -1.1 309,638 + +0.6 309,638 + -1.2 309,638 + -1.3 309,638 + +2.2 309,639 - -0.8 309,639 - -0.9 309,639 - +1.3 309,639 - -1.2 309,639 - -0.4 309,665 + -0.9 309,665 + -0.5 309,665 + -1.2 309,665 + +0.6 309,665 + +0.6 309,665 + -1.2 309,665 + -1.0 309,666 - -1.8 309,666 - -1.4 309,666 - -1.6 309,666 - -1.3 309,666 - -0.2 309,666 - -1.9 309,666 - -2.0 309,666 - -0.4 309,775 + +0.9 309,775 + -0.3 309,775 + -1.0 309,776 - +0.0 309,889 + MPMX19_06124 0.13 -0.3 309,889 + MPMX19_06124 0.13 +1.0 309,889 + MPMX19_06124 0.13 -0.6 309,889 + MPMX19_06124 0.13 -1.2 309,890 - MPMX19_06124 0.13 -1.0 309,890 - MPMX19_06124 0.13 +1.1 309,890 - MPMX19_06124 0.13 -1.1 309,890 - MPMX19_06124 0.13 -2.6 309,895 + MPMX19_06124 0.14 -0.2 309,895 + MPMX19_06124 0.14 -1.7 309,895 + MPMX19_06124 0.14 +0.0 309,895 + MPMX19_06124 0.14 -0.8 309,895 + MPMX19_06124 0.14 -0.6 309,896 - MPMX19_06124 0.14 +0.9 309,896 - MPMX19_06124 0.14 -0.6 309,896 - MPMX19_06124 0.14 +0.4 309,896 - MPMX19_06124 0.14 -1.1 309,896 - MPMX19_06124 0.14 +0.1 309,896 - MPMX19_06124 0.14 -2.7 309,896 - MPMX19_06124 0.14 -0.0 309,896 - MPMX19_06124 0.14 -0.8 309,898 + MPMX19_06124 0.14 -0.4 309,898 + MPMX19_06124 0.14 +1.4 309,898 + MPMX19_06124 0.14 +1.2 309,898 + MPMX19_06124 0.14 -0.7 309,899 - MPMX19_06124 0.14 +0.6 309,899 - MPMX19_06124 0.14 -0.1 309,899 - MPMX19_06124 0.14 -0.0 309,899 - MPMX19_06124 0.14 -0.2 309,910 + MPMX19_06124 0.16 -1.3 309,910 + MPMX19_06124 0.16 -0.6 309,910 + MPMX19_06124 0.16 -1.8 309,910 + MPMX19_06124 0.16 -0.4 309,910 + MPMX19_06124 0.16 +0.5 309,910 + MPMX19_06124 0.16 +0.2 309,910 + MPMX19_06124 0.16 -1.4 309,911 - MPMX19_06124 0.16 -0.7 309,911 - MPMX19_06124 0.16 +0.9 309,911 - MPMX19_06124 0.16 -0.0 309,911 - MPMX19_06124 0.16 -0.1 309,911 - MPMX19_06124 0.16 -2.0 309,911 - MPMX19_06124 0.16 -0.4 309,911 - MPMX19_06124 0.16 -0.3 309,911 - MPMX19_06124 0.16 -0.3 309,911 - MPMX19_06124 0.16 -0.8 310,117 + MPMX19_06124 0.49 +0.3 310,252 + MPMX19_06124 0.70 -0.4 310,252 + MPMX19_06124 0.70 -0.7 310,252 + MPMX19_06124 0.70 -2.2 310,252 + MPMX19_06124 0.70 -1.4 310,252 + MPMX19_06124 0.70 +0.3 310,252 + MPMX19_06124 0.70 +0.1 310,253 - MPMX19_06124 0.70 +0.2 310,253 - MPMX19_06124 0.70 +1.2 310,253 - MPMX19_06124 0.70 -0.7 310,253 - MPMX19_06124 0.70 -0.7
Or see this region's nucleotide sequence