Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06122

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06121 and MPMX19_06122 are separated by 159 nucleotidesMPMX19_06122 and MPMX19_06123 are separated by 67 nucleotides MPMX19_06121: MPMX19_06121 - hypothetical protein, at 306,387 to 307,229 _06121 MPMX19_06122: MPMX19_06122 - Acetylornithine deacetylase, at 307,389 to 308,717 _06122 MPMX19_06123: MPMX19_06123 - hypothetical protein, at 308,785 to 309,483 _06123 Position (kb) 307 308 309Strain fitness (log2 ratio) -2 -1 0 1 2at 306.829 kb on + strand, within MPMX19_06121at 306.829 kb on + strand, within MPMX19_06121at 306.829 kb on + strand, within MPMX19_06121at 306.830 kb on - strand, within MPMX19_06121at 306.830 kb on - strand, within MPMX19_06121at 306.830 kb on - strand, within MPMX19_06121at 306.830 kb on - strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 307.078 kb on + strand, within MPMX19_06121at 307.079 kb on - strand, within MPMX19_06121at 307.079 kb on - strand, within MPMX19_06121at 307.079 kb on - strand, within MPMX19_06121at 307.079 kb on - strand, within MPMX19_06121at 307.229 kb on + strandat 307.229 kb on + strandat 307.229 kb on + strandat 307.229 kb on + strandat 307.229 kb on + strandat 307.230 kb on - strandat 307.230 kb on - strandat 307.230 kb on - strandat 307.230 kb on - strandat 307.261 kb on + strandat 307.262 kb on - strandat 307.262 kb on - strandat 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.527 kb on + strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.528 kb on - strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.587 kb on + strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.588 kb on - strand, within MPMX19_06122at 307.770 kb on + strand, within MPMX19_06122at 307.770 kb on + strand, within MPMX19_06122at 307.771 kb on - strand, within MPMX19_06122at 307.771 kb on - strand, within MPMX19_06122at 307.771 kb on - strand, within MPMX19_06122at 307.771 kb on - strand, within MPMX19_06122at 307.771 kb on - strand, within MPMX19_06122at 307.771 kb on - strand, within MPMX19_06122at 307.938 kb on + strand, within MPMX19_06122at 307.938 kb on + strand, within MPMX19_06122at 308.284 kb on + strand, within MPMX19_06122at 308.284 kb on + strand, within MPMX19_06122at 308.284 kb on + strand, within MPMX19_06122at 308.284 kb on + strand, within MPMX19_06122at 308.284 kb on + strand, within MPMX19_06122at 308.284 kb on + strand, within MPMX19_06122at 308.284 kb on + strand, within MPMX19_06122at 308.285 kb on - strand, within MPMX19_06122at 308.285 kb on - strand, within MPMX19_06122at 308.285 kb on - strand, within MPMX19_06122at 308.285 kb on - strand, within MPMX19_06122at 308.285 kb on - strand, within MPMX19_06122at 308.285 kb on - strand, within MPMX19_06122at 308.302 kb on - strand, within MPMX19_06122at 308.302 kb on - strand, within MPMX19_06122at 308.388 kb on + strand, within MPMX19_06122at 308.389 kb on - strand, within MPMX19_06122at 308.389 kb on - strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.520 kb on + strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.521 kb on - strand, within MPMX19_06122at 308.571 kb on + strand, within MPMX19_06122at 308.572 kb on - strand, within MPMX19_06122at 308.786 kb on + strandat 308.786 kb on + strandat 308.786 kb on + strandat 308.787 kb on - strandat 308.787 kb on - strandat 308.787 kb on - strandat 308.787 kb on - strandat 308.849 kb on + strandat 308.849 kb on + strandat 309.272 kb on + strand, within MPMX19_06123at 309.275 kb on + strand, within MPMX19_06123at 309.275 kb on + strand, within MPMX19_06123at 309.634 kb on + strandat 309.634 kb on + strandat 309.634 kb on + strandat 309.634 kb on + strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.638 kb on + strandat 309.638 kb on + strandat 309.638 kb on + strandat 309.638 kb on + strandat 309.639 kb on - strandat 309.639 kb on - strandat 309.639 kb on - strandat 309.639 kb on - strandat 309.639 kb on - strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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306,829 + MPMX19_06121 0.52 -0.4
306,829 + MPMX19_06121 0.52 +0.1
306,829 + MPMX19_06121 0.52 -0.1
306,830 - MPMX19_06121 0.53 +0.2
306,830 - MPMX19_06121 0.53 -1.0
306,830 - MPMX19_06121 0.53 +0.2
306,830 - MPMX19_06121 0.53 -1.1
306,973 + MPMX19_06121 0.70 -1.0
306,973 + MPMX19_06121 0.70 +0.3
306,973 + MPMX19_06121 0.70 +1.2
306,973 + MPMX19_06121 0.70 +1.1
306,973 + MPMX19_06121 0.70 -1.3
306,973 + MPMX19_06121 0.70 -1.5
306,973 + MPMX19_06121 0.70 +0.4
306,974 - MPMX19_06121 0.70 -1.4
306,974 - MPMX19_06121 0.70 -0.6
306,974 - MPMX19_06121 0.70 +1.0
306,974 - MPMX19_06121 0.70 +0.1
306,974 - MPMX19_06121 0.70 +1.0
306,974 - MPMX19_06121 0.70 -2.0
306,974 - MPMX19_06121 0.70 +0.0
307,078 + MPMX19_06121 0.82 +0.4
307,079 - MPMX19_06121 0.82 +0.9
307,079 - MPMX19_06121 0.82 -0.0
307,079 - MPMX19_06121 0.82 -1.4
307,079 - MPMX19_06121 0.82 -1.0
307,229 + +1.9
307,229 + -1.4
307,229 + +0.2
307,229 + -0.6
307,229 + +0.1
307,230 - -1.3
307,230 - -1.3
307,230 - -1.0
307,230 - -0.7
307,261 + -0.6
307,262 - -0.5
307,262 - +0.7
307,527 + MPMX19_06122 0.10 +0.0
307,527 + MPMX19_06122 0.10 -0.1
307,527 + MPMX19_06122 0.10 +0.1
307,527 + MPMX19_06122 0.10 -0.3
307,527 + MPMX19_06122 0.10 -0.7
307,527 + MPMX19_06122 0.10 -0.4
307,527 + MPMX19_06122 0.10 +0.2
307,527 + MPMX19_06122 0.10 +1.8
307,527 + MPMX19_06122 0.10 -0.3
307,528 - MPMX19_06122 0.10 +1.5
307,528 - MPMX19_06122 0.10 -0.4
307,528 - MPMX19_06122 0.10 +0.1
307,528 - MPMX19_06122 0.10 -0.6
307,528 - MPMX19_06122 0.10 -0.7
307,528 - MPMX19_06122 0.10 +0.3
307,528 - MPMX19_06122 0.10 -0.6
307,528 - MPMX19_06122 0.10 +0.6
307,528 - MPMX19_06122 0.10 +0.8
307,528 - MPMX19_06122 0.10 +0.7
307,587 + MPMX19_06122 0.15 -0.5
307,587 + MPMX19_06122 0.15 -1.4
307,587 + MPMX19_06122 0.15 +1.2
307,587 + MPMX19_06122 0.15 +0.6
307,587 + MPMX19_06122 0.15 -0.2
307,587 + MPMX19_06122 0.15 +0.0
307,587 + MPMX19_06122 0.15 +0.4
307,587 + MPMX19_06122 0.15 -1.1
307,587 + MPMX19_06122 0.15 -2.0
307,587 + MPMX19_06122 0.15 -2.0
307,587 + MPMX19_06122 0.15 -0.4
307,587 + MPMX19_06122 0.15 -0.8
307,587 + MPMX19_06122 0.15 +0.5
307,587 + MPMX19_06122 0.15 -0.3
307,587 + MPMX19_06122 0.15 +0.3
307,587 + MPMX19_06122 0.15 -1.0
307,587 + MPMX19_06122 0.15 -2.1
307,588 - MPMX19_06122 0.15 -1.5
307,588 - MPMX19_06122 0.15 -2.4
307,588 - MPMX19_06122 0.15 +0.9
307,588 - MPMX19_06122 0.15 +0.2
307,588 - MPMX19_06122 0.15 -0.4
307,588 - MPMX19_06122 0.15 +0.8
307,588 - MPMX19_06122 0.15 -1.1
307,588 - MPMX19_06122 0.15 -0.6
307,588 - MPMX19_06122 0.15 +0.4
307,588 - MPMX19_06122 0.15 -2.3
307,588 - MPMX19_06122 0.15 +0.2
307,588 - MPMX19_06122 0.15 +1.2
307,588 - MPMX19_06122 0.15 -0.7
307,588 - MPMX19_06122 0.15 -1.8
307,588 - MPMX19_06122 0.15 -0.5
307,770 + MPMX19_06122 0.29 +0.6
307,770 + MPMX19_06122 0.29 -0.0
307,771 - MPMX19_06122 0.29 -1.4
307,771 - MPMX19_06122 0.29 -0.4
307,771 - MPMX19_06122 0.29 -0.5
307,771 - MPMX19_06122 0.29 +0.2
307,771 - MPMX19_06122 0.29 -1.7
307,771 - MPMX19_06122 0.29 -1.0
307,938 + MPMX19_06122 0.41 -0.5
307,938 + MPMX19_06122 0.41 +1.0
308,284 + MPMX19_06122 0.67 -0.6
308,284 + MPMX19_06122 0.67 -0.3
308,284 + MPMX19_06122 0.67 +0.1
308,284 + MPMX19_06122 0.67 +0.0
308,284 + MPMX19_06122 0.67 -1.8
308,284 + MPMX19_06122 0.67 -1.7
308,284 + MPMX19_06122 0.67 -0.1
308,285 - MPMX19_06122 0.67 +1.2
308,285 - MPMX19_06122 0.67 +0.7
308,285 - MPMX19_06122 0.67 -0.9
308,285 - MPMX19_06122 0.67 -0.1
308,285 - MPMX19_06122 0.67 -0.6
308,285 - MPMX19_06122 0.67 +0.6
308,302 - MPMX19_06122 0.69 -0.3
308,302 - MPMX19_06122 0.69 +0.1
308,388 + MPMX19_06122 0.75 -0.4
308,389 - MPMX19_06122 0.75 -0.1
308,389 - MPMX19_06122 0.75 -0.6
308,520 + MPMX19_06122 0.85 +0.2
308,520 + MPMX19_06122 0.85 -1.7
308,520 + MPMX19_06122 0.85 +0.3
308,520 + MPMX19_06122 0.85 -1.5
308,520 + MPMX19_06122 0.85 -0.6
308,520 + MPMX19_06122 0.85 +0.0
308,520 + MPMX19_06122 0.85 -1.3
308,520 + MPMX19_06122 0.85 +0.0
308,520 + MPMX19_06122 0.85 -0.5
308,520 + MPMX19_06122 0.85 -0.2
308,520 + MPMX19_06122 0.85 +0.1
308,521 - MPMX19_06122 0.85 -0.7
308,521 - MPMX19_06122 0.85 -0.6
308,521 - MPMX19_06122 0.85 -0.8
308,521 - MPMX19_06122 0.85 +1.5
308,521 - MPMX19_06122 0.85 -0.6
308,521 - MPMX19_06122 0.85 -0.1
308,521 - MPMX19_06122 0.85 -0.8
308,521 - MPMX19_06122 0.85 +0.4
308,521 - MPMX19_06122 0.85 -0.3
308,521 - MPMX19_06122 0.85 -1.9
308,521 - MPMX19_06122 0.85 -0.5
308,521 - MPMX19_06122 0.85 +0.2
308,521 - MPMX19_06122 0.85 -0.7
308,521 - MPMX19_06122 0.85 +1.0
308,571 + MPMX19_06122 0.89 -1.1
308,572 - MPMX19_06122 0.89 +0.4
308,786 + +0.8
308,786 + -2.0
308,786 + +0.3
308,787 - -0.4
308,787 - -1.5
308,787 - -0.3
308,787 - -0.1
308,849 + -0.4
308,849 + -0.2
309,272 + MPMX19_06123 0.70 -1.9
309,275 + MPMX19_06123 0.70 +1.0
309,275 + MPMX19_06123 0.70 -2.0
309,634 + -0.8
309,634 + -0.1
309,634 + -0.2
309,634 + +0.4
309,635 - -0.1
309,635 - -0.8
309,635 - -1.4
309,635 - -1.6
309,635 - -0.6
309,635 - -1.1
309,638 + +0.6
309,638 + -1.2
309,638 + -1.3
309,638 + +2.2
309,639 - -0.8
309,639 - -0.9
309,639 - +1.3
309,639 - -1.2
309,639 - -0.4
309,665 + -0.9
309,665 + -0.5
309,665 + -1.2
309,665 + +0.6
309,665 + +0.6
309,665 + -1.2
309,665 + -1.0
309,666 - -1.8
309,666 - -1.4
309,666 - -1.6
309,666 - -1.3
309,666 - -0.2
309,666 - -1.9
309,666 - -2.0
309,666 - -0.4

Or see this region's nucleotide sequence