Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06102

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06101 and MPMX19_06102 are separated by 228 nucleotidesMPMX19_06102 and MPMX19_06103 are separated by 52 nucleotidesMPMX19_06103 and MPMX19_06104 overlap by 4 nucleotides MPMX19_06101: MPMX19_06101 - hypothetical protein, at 283,656 to 284,546 _06101 MPMX19_06102: MPMX19_06102 - Membrane-bound lytic murein transglycosylase C, at 284,775 to 287,072 _06102 MPMX19_06103: MPMX19_06103 - Molybdenum cofactor biosynthesis protein B, at 287,125 to 287,661 _06103 MPMX19_06104: MPMX19_06104 - hypothetical protein, at 287,658 to 288,674 _06104 Position (kb) 284 285 286 287 288Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 284.591 kb on + strandat 284.591 kb on + strandat 284.591 kb on + strandat 284.591 kb on + strandat 284.591 kb on + strandat 284.592 kb on - strandat 284.691 kb on + strandat 284.691 kb on + strandat 284.692 kb on - strandat 284.692 kb on - strandat 284.763 kb on + strandat 284.803 kb on - strandat 284.868 kb on + strandat 284.868 kb on + strandat 284.868 kb on + strandat 284.869 kb on - strandat 285.334 kb on - strand, within MPMX19_06102at 285.351 kb on + strand, within MPMX19_06102at 285.352 kb on - strand, within MPMX19_06102at 285.741 kb on + strand, within MPMX19_06102at 285.742 kb on - strand, within MPMX19_06102at 285.778 kb on - strand, within MPMX19_06102at 285.778 kb on - strand, within MPMX19_06102at 285.781 kb on - strand, within MPMX19_06102at 285.947 kb on + strand, within MPMX19_06102at 286.068 kb on + strand, within MPMX19_06102at 286.068 kb on + strand, within MPMX19_06102at 286.068 kb on + strand, within MPMX19_06102at 286.068 kb on + strand, within MPMX19_06102at 286.069 kb on - strand, within MPMX19_06102at 286.360 kb on - strand, within MPMX19_06102at 286.788 kb on + strand, within MPMX19_06102at 286.822 kb on - strand, within MPMX19_06102at 286.822 kb on - strand, within MPMX19_06102at 286.887 kb on + strandat 286.887 kb on + strandat 286.887 kb on + strandat 286.887 kb on + strandat 286.887 kb on + strandat 286.887 kb on + strandat 286.887 kb on + strandat 286.888 kb on - strandat 286.888 kb on - strandat 286.888 kb on - strandat 286.888 kb on - strandat 286.888 kb on - strandat 286.888 kb on - strandat 286.888 kb on - strandat 286.889 kb on + strandat 286.889 kb on + strandat 286.890 kb on - strandat 286.890 kb on - strandat 286.890 kb on - strandat 287.413 kb on + strand, within MPMX19_06103at 287.413 kb on + strand, within MPMX19_06103at 287.413 kb on + strand, within MPMX19_06103at 287.413 kb on + strand, within MPMX19_06103at 287.413 kb on + strand, within MPMX19_06103at 287.414 kb on - strand, within MPMX19_06103at 287.414 kb on - strand, within MPMX19_06103at 287.414 kb on - strand, within MPMX19_06103at 287.452 kb on + strand, within MPMX19_06103at 287.452 kb on + strand, within MPMX19_06103at 287.453 kb on - strand, within MPMX19_06103at 287.453 kb on - strand, within MPMX19_06103at 287.453 kb on - strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.462 kb on - strand, within MPMX19_06103at 287.462 kb on - strand, within MPMX19_06103at 287.462 kb on - strand, within MPMX19_06103at 287.462 kb on - strand, within MPMX19_06103at 287.462 kb on - strand, within MPMX19_06103at 287.462 kb on - strand, within MPMX19_06103at 287.462 kb on - strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.652 kb on + strandat 287.652 kb on + strandat 287.652 kb on + strandat 287.652 kb on + strandat 287.652 kb on + strandat 287.652 kb on + strandat 287.652 kb on + strandat 287.652 kb on + strandat 287.652 kb on + strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.653 kb on - strandat 288.066 kb on + strand, within MPMX19_06104at 288.066 kb on + strand, within MPMX19_06104at 288.066 kb on + strand, within MPMX19_06104at 288.067 kb on - strand, within MPMX19_06104at 288.067 kb on - strand, within MPMX19_06104at 288.067 kb on - strand, within MPMX19_06104at 288.067 kb on - strand, within MPMX19_06104

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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284,591 + +0.4
284,591 + +1.2
284,591 + -0.9
284,591 + -0.9
284,591 + -1.2
284,592 - -0.6
284,691 + -0.0
284,691 + +0.9
284,692 - -0.4
284,692 - +0.1
284,763 + +0.0
284,803 - +0.2
284,868 + -1.0
284,868 + -0.1
284,868 + +0.8
284,869 - -0.1
285,334 - MPMX19_06102 0.24 -1.1
285,351 + MPMX19_06102 0.25 +0.4
285,352 - MPMX19_06102 0.25 +2.2
285,741 + MPMX19_06102 0.42 -1.1
285,742 - MPMX19_06102 0.42 -1.1
285,778 - MPMX19_06102 0.44 -1.0
285,778 - MPMX19_06102 0.44 -0.1
285,781 - MPMX19_06102 0.44 -0.1
285,947 + MPMX19_06102 0.51 +0.3
286,068 + MPMX19_06102 0.56 -1.0
286,068 + MPMX19_06102 0.56 -0.6
286,068 + MPMX19_06102 0.56 +0.5
286,068 + MPMX19_06102 0.56 -1.0
286,069 - MPMX19_06102 0.56 +1.6
286,360 - MPMX19_06102 0.69 -1.3
286,788 + MPMX19_06102 0.88 -1.4
286,822 - MPMX19_06102 0.89 -0.1
286,822 - MPMX19_06102 0.89 +0.2
286,887 + -0.1
286,887 + +0.5
286,887 + +1.0
286,887 + +0.0
286,887 + +0.2
286,887 + -0.0
286,887 + -0.8
286,888 - -1.0
286,888 - +0.4
286,888 - +0.2
286,888 - -0.5
286,888 - -0.4
286,888 - +0.2
286,888 - -0.4
286,889 + -1.0
286,889 + -1.5
286,890 - -0.4
286,890 - +1.2
286,890 - +1.3
287,413 + MPMX19_06103 0.54 -0.3
287,413 + MPMX19_06103 0.54 -0.8
287,413 + MPMX19_06103 0.54 -1.4
287,413 + MPMX19_06103 0.54 +0.8
287,413 + MPMX19_06103 0.54 -0.8
287,414 - MPMX19_06103 0.54 +0.4
287,414 - MPMX19_06103 0.54 -0.4
287,414 - MPMX19_06103 0.54 +0.9
287,452 + MPMX19_06103 0.61 +0.0
287,452 + MPMX19_06103 0.61 +0.2
287,453 - MPMX19_06103 0.61 -1.0
287,453 - MPMX19_06103 0.61 -0.7
287,453 - MPMX19_06103 0.61 +0.2
287,461 + MPMX19_06103 0.63 -1.3
287,461 + MPMX19_06103 0.63 +0.0
287,461 + MPMX19_06103 0.63 +0.8
287,461 + MPMX19_06103 0.63 -0.1
287,461 + MPMX19_06103 0.63 +1.2
287,461 + MPMX19_06103 0.63 -0.8
287,461 + MPMX19_06103 0.63 -0.5
287,461 + MPMX19_06103 0.63 +0.5
287,461 + MPMX19_06103 0.63 -1.1
287,461 + MPMX19_06103 0.63 +0.0
287,461 + MPMX19_06103 0.63 -0.2
287,462 - MPMX19_06103 0.63 -1.9
287,462 - MPMX19_06103 0.63 -0.3
287,462 - MPMX19_06103 0.63 -0.3
287,462 - MPMX19_06103 0.63 -0.0
287,462 - MPMX19_06103 0.63 +0.9
287,462 - MPMX19_06103 0.63 +0.6
287,462 - MPMX19_06103 0.63 +0.6
287,524 + MPMX19_06103 0.74 -0.7
287,524 + MPMX19_06103 0.74 -1.0
287,524 + MPMX19_06103 0.74 +0.0
287,524 + MPMX19_06103 0.74 +0.4
287,524 + MPMX19_06103 0.74 +0.4
287,524 + MPMX19_06103 0.74 -1.6
287,524 + MPMX19_06103 0.74 +0.3
287,524 + MPMX19_06103 0.74 -0.3
287,524 + MPMX19_06103 0.74 -0.7
287,524 + MPMX19_06103 0.74 -2.5
287,524 + MPMX19_06103 0.74 -1.7
287,524 + MPMX19_06103 0.74 -2.8
287,524 + MPMX19_06103 0.74 -0.6
287,524 + MPMX19_06103 0.74 +0.4
287,524 + MPMX19_06103 0.74 +1.4
287,524 + MPMX19_06103 0.74 -1.3
287,525 - MPMX19_06103 0.74 -1.0
287,525 - MPMX19_06103 0.74 +0.8
287,525 - MPMX19_06103 0.74 -2.7
287,525 - MPMX19_06103 0.74 +1.2
287,525 - MPMX19_06103 0.74 -0.4
287,525 - MPMX19_06103 0.74 -0.1
287,525 - MPMX19_06103 0.74 -0.7
287,525 - MPMX19_06103 0.74 -1.8
287,525 - MPMX19_06103 0.74 +0.0
287,525 - MPMX19_06103 0.74 -1.5
287,525 - MPMX19_06103 0.74 +0.8
287,525 - MPMX19_06103 0.74 -1.2
287,652 + -1.0
287,652 + -0.3
287,652 + -1.5
287,652 + -0.9
287,652 + -1.0
287,652 + -0.2
287,652 + +0.0
287,652 + -0.3
287,652 + +0.5
287,653 - -0.4
287,653 - -0.8
287,653 - +1.2
287,653 - -1.8
287,653 - -0.8
287,653 - +0.2
287,653 - -0.7
288,066 + MPMX19_06104 0.40 +0.3
288,066 + MPMX19_06104 0.40 +0.5
288,066 + MPMX19_06104 0.40 +1.1
288,067 - MPMX19_06104 0.40 -0.3
288,067 - MPMX19_06104 0.40 -1.3
288,067 - MPMX19_06104 0.40 +0.2
288,067 - MPMX19_06104 0.40 -0.7

Or see this region's nucleotide sequence