Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06083

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06082 and MPMX19_06083 are separated by 11 nucleotidesMPMX19_06083 and MPMX19_06084 are separated by 73 nucleotidesMPMX19_06084 and MPMX19_06085 are separated by 131 nucleotides MPMX19_06082: MPMX19_06082 - Molybdenum storage protein subunit beta, at 257,930 to 258,769 _06082 MPMX19_06083: MPMX19_06083 - Molybdenum storage protein subunit alpha, at 258,781 to 259,614 _06083 MPMX19_06084: MPMX19_06084 - Transcriptional regulatory protein LnrK, at 259,688 to 260,338 _06084 MPMX19_06085: MPMX19_06085 - hypothetical protein, at 260,470 to 261,483 _06085 Position (kb) 258 259 260Strain fitness (log2 ratio) -2 -1 0 1 2at 257.804 kb on + strandat 257.805 kb on - strandat 257.891 kb on + strandat 257.891 kb on + strandat 257.891 kb on + strandat 257.891 kb on + strandat 257.891 kb on + strandat 257.891 kb on + strandat 257.892 kb on - strandat 257.892 kb on - strandat 257.892 kb on - strandat 257.892 kb on - strandat 257.892 kb on - strandat 257.892 kb on - strandat 257.892 kb on - strandat 258.125 kb on + strand, within MPMX19_06082at 258.126 kb on - strand, within MPMX19_06082at 258.212 kb on + strand, within MPMX19_06082at 258.212 kb on + strand, within MPMX19_06082at 258.212 kb on + strand, within MPMX19_06082at 258.212 kb on + strand, within MPMX19_06082at 258.212 kb on + strand, within MPMX19_06082at 258.212 kb on + strand, within MPMX19_06082at 258.212 kb on + strand, within MPMX19_06082at 258.213 kb on - strand, within MPMX19_06082at 258.213 kb on - strand, within MPMX19_06082at 258.213 kb on - strand, within MPMX19_06082at 258.213 kb on - strand, within MPMX19_06082at 258.213 kb on - strand, within MPMX19_06082at 258.213 kb on - strand, within MPMX19_06082at 258.365 kb on + strand, within MPMX19_06082at 258.365 kb on + strand, within MPMX19_06082at 258.366 kb on - strand, within MPMX19_06082at 258.366 kb on - strand, within MPMX19_06082at 258.366 kb on - strand, within MPMX19_06082at 258.366 kb on - strand, within MPMX19_06082at 258.366 kb on - strand, within MPMX19_06082at 258.410 kb on + strand, within MPMX19_06082at 258.411 kb on - strand, within MPMX19_06082at 258.411 kb on - strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.539 kb on + strand, within MPMX19_06082at 258.539 kb on + strand, within MPMX19_06082at 258.539 kb on + strand, within MPMX19_06082at 258.539 kb on + strand, within MPMX19_06082at 258.539 kb on + strand, within MPMX19_06082at 258.540 kb on - strand, within MPMX19_06082at 258.540 kb on - strand, within MPMX19_06082at 258.540 kb on - strand, within MPMX19_06082at 258.540 kb on - strand, within MPMX19_06082at 258.540 kb on - strand, within MPMX19_06082at 258.540 kb on - strand, within MPMX19_06082at 259.045 kb on + strand, within MPMX19_06083at 259.045 kb on + strand, within MPMX19_06083at 259.045 kb on + strand, within MPMX19_06083at 259.045 kb on + strand, within MPMX19_06083at 259.046 kb on - strand, within MPMX19_06083at 259.046 kb on - strand, within MPMX19_06083at 259.125 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.246 kb on + strand, within MPMX19_06083at 259.246 kb on + strand, within MPMX19_06083at 259.247 kb on - strand, within MPMX19_06083at 259.247 kb on - strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.660 kb on + strandat 259.689 kb on + strandat 259.689 kb on + strandat 259.689 kb on + strandat 259.689 kb on + strandat 259.690 kb on - strandat 259.690 kb on - strandat 259.690 kb on - strandat 259.690 kb on - strandat 259.710 kb on - strandat 259.830 kb on + strand, within MPMX19_06084at 259.830 kb on + strand, within MPMX19_06084at 259.830 kb on + strand, within MPMX19_06084at 259.830 kb on + strand, within MPMX19_06084at 259.830 kb on + strand, within MPMX19_06084at 259.831 kb on - strand, within MPMX19_06084at 259.831 kb on - strand, within MPMX19_06084at 260.046 kb on + strand, within MPMX19_06084at 260.372 kb on + strandat 260.400 kb on + strandat 260.401 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
257,804 + +0.1
257,805 - -1.5
257,891 + +0.2
257,891 + -0.8
257,891 + +0.5
257,891 + +1.1
257,891 + -1.5
257,891 + -0.5
257,892 - -0.2
257,892 - -1.3
257,892 - -1.6
257,892 - -0.7
257,892 - -0.8
257,892 - +0.2
257,892 - +0.8
258,125 + MPMX19_06082 0.23 -0.7
258,126 - MPMX19_06082 0.23 -0.4
258,212 + MPMX19_06082 0.34 -0.8
258,212 + MPMX19_06082 0.34 -0.4
258,212 + MPMX19_06082 0.34 +0.6
258,212 + MPMX19_06082 0.34 -1.4
258,212 + MPMX19_06082 0.34 +0.2
258,212 + MPMX19_06082 0.34 -0.2
258,212 + MPMX19_06082 0.34 +1.2
258,213 - MPMX19_06082 0.34 +1.9
258,213 - MPMX19_06082 0.34 +0.5
258,213 - MPMX19_06082 0.34 +0.6
258,213 - MPMX19_06082 0.34 +0.2
258,213 - MPMX19_06082 0.34 +0.1
258,213 - MPMX19_06082 0.34 -0.1
258,365 + MPMX19_06082 0.52 +0.4
258,365 + MPMX19_06082 0.52 -0.3
258,366 - MPMX19_06082 0.52 +1.4
258,366 - MPMX19_06082 0.52 -1.6
258,366 - MPMX19_06082 0.52 +1.6
258,366 - MPMX19_06082 0.52 -0.1
258,366 - MPMX19_06082 0.52 -0.0
258,410 + MPMX19_06082 0.57 +0.6
258,411 - MPMX19_06082 0.57 +0.4
258,411 - MPMX19_06082 0.57 -0.5
258,515 + MPMX19_06082 0.70 +0.9
258,515 + MPMX19_06082 0.70 -0.8
258,515 + MPMX19_06082 0.70 -0.2
258,515 + MPMX19_06082 0.70 -0.4
258,515 + MPMX19_06082 0.70 -0.2
258,515 + MPMX19_06082 0.70 -1.2
258,515 + MPMX19_06082 0.70 -0.0
258,515 + MPMX19_06082 0.70 -1.2
258,515 + MPMX19_06082 0.70 -0.4
258,515 + MPMX19_06082 0.70 -0.2
258,515 + MPMX19_06082 0.70 -0.5
258,515 + MPMX19_06082 0.70 -1.6
258,516 - MPMX19_06082 0.70 +0.5
258,516 - MPMX19_06082 0.70 -0.8
258,516 - MPMX19_06082 0.70 -0.3
258,516 - MPMX19_06082 0.70 -1.1
258,516 - MPMX19_06082 0.70 +0.2
258,516 - MPMX19_06082 0.70 +0.3
258,516 - MPMX19_06082 0.70 -0.3
258,516 - MPMX19_06082 0.70 +0.9
258,516 - MPMX19_06082 0.70 -0.8
258,516 - MPMX19_06082 0.70 -0.2
258,516 - MPMX19_06082 0.70 +0.2
258,516 - MPMX19_06082 0.70 -0.4
258,516 - MPMX19_06082 0.70 +0.8
258,516 - MPMX19_06082 0.70 -0.1
258,516 - MPMX19_06082 0.70 +1.2
258,516 - MPMX19_06082 0.70 -1.4
258,516 - MPMX19_06082 0.70 -0.8
258,516 - MPMX19_06082 0.70 +0.0
258,539 + MPMX19_06082 0.72 -1.3
258,539 + MPMX19_06082 0.72 -0.4
258,539 + MPMX19_06082 0.72 -1.3
258,539 + MPMX19_06082 0.72 -0.7
258,539 + MPMX19_06082 0.72 +0.4
258,540 - MPMX19_06082 0.73 -1.6
258,540 - MPMX19_06082 0.73 -1.1
258,540 - MPMX19_06082 0.73 -1.1
258,540 - MPMX19_06082 0.73 -0.5
258,540 - MPMX19_06082 0.73 +0.2
258,540 - MPMX19_06082 0.73 +0.9
259,045 + MPMX19_06083 0.32 -2.5
259,045 + MPMX19_06083 0.32 +0.2
259,045 + MPMX19_06083 0.32 -1.4
259,045 + MPMX19_06083 0.32 +0.2
259,046 - MPMX19_06083 0.32 -1.2
259,046 - MPMX19_06083 0.32 +0.1
259,125 + MPMX19_06083 0.41 -2.5
259,162 + MPMX19_06083 0.46 -1.0
259,162 + MPMX19_06083 0.46 -1.2
259,162 + MPMX19_06083 0.46 -0.3
259,162 + MPMX19_06083 0.46 +0.2
259,162 + MPMX19_06083 0.46 +0.8
259,162 + MPMX19_06083 0.46 -0.9
259,162 + MPMX19_06083 0.46 +0.2
259,162 + MPMX19_06083 0.46 +1.6
259,162 + MPMX19_06083 0.46 -1.4
259,162 + MPMX19_06083 0.46 -0.4
259,162 + MPMX19_06083 0.46 -1.5
259,162 + MPMX19_06083 0.46 -0.4
259,162 + MPMX19_06083 0.46 -0.8
259,162 + MPMX19_06083 0.46 -0.8
259,162 + MPMX19_06083 0.46 -0.1
259,162 + MPMX19_06083 0.46 -1.8
259,162 + MPMX19_06083 0.46 -0.0
259,163 - MPMX19_06083 0.46 -2.0
259,163 - MPMX19_06083 0.46 -0.2
259,163 - MPMX19_06083 0.46 -0.4
259,163 - MPMX19_06083 0.46 +0.2
259,163 - MPMX19_06083 0.46 -0.1
259,163 - MPMX19_06083 0.46 -2.3
259,163 - MPMX19_06083 0.46 -1.0
259,163 - MPMX19_06083 0.46 +0.0
259,163 - MPMX19_06083 0.46 +1.5
259,163 - MPMX19_06083 0.46 -0.8
259,163 - MPMX19_06083 0.46 +1.4
259,163 - MPMX19_06083 0.46 +0.6
259,163 - MPMX19_06083 0.46 -0.8
259,163 - MPMX19_06083 0.46 +0.8
259,163 - MPMX19_06083 0.46 -0.2
259,163 - MPMX19_06083 0.46 -0.3
259,163 - MPMX19_06083 0.46 +0.8
259,163 - MPMX19_06083 0.46 +0.5
259,246 + MPMX19_06083 0.56 +0.2
259,246 + MPMX19_06083 0.56 +0.6
259,247 - MPMX19_06083 0.56 +0.6
259,247 - MPMX19_06083 0.56 -0.4
259,369 + MPMX19_06083 0.71 -0.6
259,369 + MPMX19_06083 0.71 -1.1
259,369 + MPMX19_06083 0.71 -0.5
259,369 + MPMX19_06083 0.71 +0.6
259,369 + MPMX19_06083 0.71 -0.4
259,369 + MPMX19_06083 0.71 -1.8
259,369 + MPMX19_06083 0.71 -1.1
259,369 + MPMX19_06083 0.71 -0.7
259,369 + MPMX19_06083 0.71 -1.6
259,369 + MPMX19_06083 0.71 -0.4
259,369 + MPMX19_06083 0.71 -2.1
259,369 + MPMX19_06083 0.71 +0.6
259,369 + MPMX19_06083 0.71 -0.6
259,369 + MPMX19_06083 0.71 -0.8
259,370 - MPMX19_06083 0.71 -1.0
259,370 - MPMX19_06083 0.71 -1.1
259,370 - MPMX19_06083 0.71 -0.5
259,370 - MPMX19_06083 0.71 -0.2
259,370 - MPMX19_06083 0.71 -0.5
259,370 - MPMX19_06083 0.71 -0.7
259,370 - MPMX19_06083 0.71 -0.8
259,370 - MPMX19_06083 0.71 +0.7
259,370 - MPMX19_06083 0.71 -0.0
259,660 + -0.8
259,689 + -1.4
259,689 + +0.2
259,689 + -0.4
259,689 + -1.8
259,690 - +1.0
259,690 - +1.0
259,690 - -0.6
259,690 - +0.2
259,710 - +0.8
259,830 + MPMX19_06084 0.22 -0.9
259,830 + MPMX19_06084 0.22 -1.7
259,830 + MPMX19_06084 0.22 -1.2
259,830 + MPMX19_06084 0.22 +0.6
259,830 + MPMX19_06084 0.22 +0.9
259,831 - MPMX19_06084 0.22 -0.6
259,831 - MPMX19_06084 0.22 +0.4
260,046 + MPMX19_06084 0.55 -1.1
260,372 + +0.2
260,400 + -1.6
260,401 - +0.2

Or see this region's nucleotide sequence